CRAN Package Check Results for Package CleanBSequences

Last updated on 2025-02-23 15:49:39 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	2.3.0	13.56	113.60	127.16	OK
r-devel-linux-x86_64-debian-gcc	2.3.0	9.55	80.76	90.31	OK
r-devel-linux-x86_64-fedora-clang	2.3.0			137.92	ERROR
r-devel-linux-x86_64-fedora-gcc	2.3.0			134.85	ERROR
r-devel-macos-arm64	2.3.0			52.00	OK
r-devel-macos-x86_64	2.3.0			125.00	OK
r-devel-windows-x86_64	2.3.0	13.00	112.00	125.00	OK
r-patched-linux-x86_64	2.3.0	12.11	104.34	116.45	OK
r-release-linux-x86_64	2.3.0	12.25	102.78	115.03	OK
r-release-macos-arm64	2.3.0			50.00	OK
r-release-macos-x86_64	2.3.0			30.00	ERROR
r-release-windows-x86_64	2.3.0	15.00	126.00	141.00	OK
r-oldrel-macos-arm64	2.3.0			20.00	ERROR
r-oldrel-macos-x86_64	2.3.0			25.00	ERROR
r-oldrel-windows-x86_64	2.3.0	1.00	11.00	12.00	ERROR

Check Details

Version: 2.3.0
Check: examples
Result: ERROR Running examples in ‘CleanBSequences-Ex.R’ failed The error most likely occurred in: > ### Name: DNAStringSetOPR > ### Title: Curing of biological sequences > ### Aliases: DNAStringSetOPR > > ### ** Examples > > SEQs = readDNAStringSet(system.file("sequences","SeqInputOPR.fasta", package = "CleanBSequences")) > PrimerR= DNAString ("GACTGCGTACCATGC") > DNAStringSetOPR (SEQs,PrimerR) DNAStringSet object of length 2: width seq names [1] 116 GCCTCGCCTCCCTCTTTGATCAG...CCTTTGCAATCTTCACAAGGTGG 170522-033_K03_11... [2] 113 GTCTACTCGATCGTGATCCGGTA...CCTTTGCAATCTTCACAAGGTGG 170522-033_C05_15... Local PairwiseAlignmentsSingleSubject (1 of 2) Error in h(simpleError(msg, call)) : error in evaluating the argument 'table' in selecting a method for function 'match': object 'DNA_AND_RNA_COLORED_LETTERS' not found Calls: DNAStringSetOPR ... add_colors.DNA -> vapply -> FUN -> match -> .handleSimpleError -> h Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.3.0
Check: package dependencies
Result: ERROR Package required but not available: ‘pwalign’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64