Last updated on 2024-05-02 13:49:51 CEST.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 1.4.0 | 13.49 | 129.61 | 143.10 | ERROR | |
r-devel-linux-x86_64-debian-gcc | 1.4.0 | 10.67 | 94.34 | 105.01 | ERROR | |
r-devel-linux-x86_64-fedora-clang | 1.4.0 | 187.27 | ERROR | |||
r-devel-linux-x86_64-fedora-gcc | 1.4.0 | 174.67 | OK | |||
r-devel-windows-x86_64 | 1.4.0 | 12.00 | 109.00 | 121.00 | OK | |
r-patched-linux-x86_64 | 1.4.0 | 11.51 | 119.11 | 130.62 | ERROR | |
r-release-linux-x86_64 | 1.4.0 | 11.23 | 120.77 | 132.00 | ERROR | |
r-release-macos-arm64 | 1.4.0 | 57.00 | OK | |||
r-release-macos-x86_64 | 1.4.0 | 97.00 | OK | |||
r-release-windows-x86_64 | 1.4.0 | 13.00 | 106.00 | 119.00 | OK | |
r-oldrel-macos-arm64 | 1.4.0 | 49.00 | OK | |||
r-oldrel-macos-x86_64 | 1.4.0 | 94.00 | OK | |||
r-oldrel-windows-x86_64 | 1.4.0 | 16.00 | 137.00 | 153.00 | OK |
Version: 1.4.0
Check: examples
Result: ERROR
Running examples in ‘CleanBSequences-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: DNAStringSetOPR
> ### Title: Curing of biological sequences
> ### Aliases: DNAStringSetOPR
>
> ### ** Examples
>
> SEQs = readDNAStringSet(system.file("sequences","SeqInputOPR.fasta", package = "CleanBSequences"))
> PrimerR= DNAString ("GACTGCGTACCATGC")
> DNAStringSetOPR (SEQs,PrimerR)
DNAStringSet object of length 2:
width seq names
[1] 116 GCCTCGCCTCCCTCTTTGATCAG...CCTTTGCAATCTTCACAAGGTGG 170522-033_K03_11...
[2] 113 GTCTACTCGATCGTGATCCGGTA...CCTTTGCAATCTTCACAAGGTGG 170522-033_C05_15...
Error in .load_package_gracefully("pwalign", "Starting with BioC 3.19, ", :
Could not load package pwalign. Is it installed?
Note that Starting with BioC 3.19, calling pairwiseAlignment() requires
the pwalign package. Please install it with:
BiocManager::install("pwalign")
Calls: DNAStringSetOPR ... pairwiseAlignment -> .call_fun_in_pwalign -> .load_package_gracefully
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.4.0
Check: examples
Result: ERROR
Running examples in ‘CleanBSequences-Ex.R’ failed
The error most likely occurred in:
> ### Name: DNAStringSetOPR
> ### Title: Curing of biological sequences
> ### Aliases: DNAStringSetOPR
>
> ### ** Examples
>
> SEQs = readDNAStringSet(system.file("sequences","SeqInputOPR.fasta", package = "CleanBSequences"))
> PrimerR= DNAString ("GACTGCGTACCATGC")
> DNAStringSetOPR (SEQs,PrimerR)
DNAStringSet object of length 2:
width seq names
[1] 116 GCCTCGCCTCCCTCTTTGATCAG...CCTTTGCAATCTTCACAAGGTGG 170522-033_K03_11...
[2] 113 GTCTACTCGATCGTGATCCGGTA...CCTTTGCAATCTTCACAAGGTGG 170522-033_C05_15...
Error in .load_package_gracefully("pwalign", "starting with BioC 3.19, ", :
Could not load package pwalign. Is it installed?
Note that starting with BioC 3.19, calling pairwiseAlignment() requires
the pwalign package. Please install it with:
BiocManager::install("pwalign")
Calls: DNAStringSetOPR ... pairwiseAlignment -> .call_fun_in_pwalign -> .load_package_gracefully
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.