CRAN Package Check Results for Package flocker

Last updated on 2025-02-23 15:49:42 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0-0	13.35	241.39	254.74	ERROR
r-devel-linux-x86_64-debian-gcc	1.0-0	11.40	857.24	868.64	OK
r-devel-linux-x86_64-fedora-clang	1.0-0			353.31	ERROR
r-devel-linux-x86_64-fedora-gcc	1.0-0			1954.95	OK
r-devel-macos-arm64	1.0-0			404.00	OK
r-devel-macos-x86_64	1.0-0			1424.00	OK
r-devel-windows-x86_64	1.0-0	13.00	882.00	895.00	OK
r-patched-linux-x86_64	1.0-0	13.26	1185.92	1199.18	OK
r-release-linux-x86_64	1.0-0	11.22	1174.08	1185.30	OK
r-release-macos-arm64	1.0-0			376.00	OK
r-release-macos-x86_64	1.0-0			1064.00	OK
r-release-windows-x86_64	1.0-0	14.00	902.00	916.00	OK
r-oldrel-macos-arm64	1.0-0			341.00	OK
r-oldrel-macos-x86_64	1.0-0			646.00	OK
r-oldrel-windows-x86_64	1.0-0	19.00	1191.00	1210.00	OK

Additional issues

M1mac

Check Details

Version: 1.0-0
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [158s/192s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(flocker) > > test_check("flocker") Formatting data for a single-season occupancy model. For details, see make_flocker_data_static. All warnings and error messages should be interpreted in the context of make_flocker_data_static Compiling Stan program... Start sampling SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.000233 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.33 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 8 [ 12%] (Warmup) Chain 1: Iteration: 2 / 8 [ 25%] (Warmup) Chain 1: Iteration: 3 / 8 [ 37%] (Warmup) Chain 1: Iteration: 4 / 8 [ 50%] (Warmup) Chain 1: Iteration: 5 / 8 [ 62%] (Sampling) Chain 1: Iteration: 6 / 8 [ 75%] (Sampling) Chain 1: Iteration: 7 / 8 [ 87%] (Sampling) Chain 1: Iteration: 8 / 8 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.002 seconds (Warm-up) Chain 1: 0.003 seconds (Sampling) Chain 1: 0.005 seconds (Total) Chain 1: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.000115 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 1.15 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 8 [ 12%] (Warmup) Chain 2: Iteration: 2 / 8 [ 25%] (Warmup) Chain 2: Iteration: 3 / 8 [ 37%] (Warmup) Chain 2: Iteration: 4 / 8 [ 50%] (Warmup) Chain 2: Iteration: 5 / 8 [ 62%] (Sampling) Chain 2: Iteration: 6 / 8 [ 75%] (Sampling) Chain 2: Iteration: 7 / 8 [ 87%] (Sampling) Chain 2: Iteration: 8 / 8 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.002 seconds (Warm-up) Chain 2: 0.005 seconds (Sampling) Chain 2: 0.007 seconds (Total) Chain 2: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 0.000119 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 1.19 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: WARNING: No variance estimation is Chain 3: performed for num_warmup < 20 Chain 3: Chain 3: Iteration: 1 / 8 [ 12%] (Warmup) Chain 3: Iteration: 2 / 8 [ 25%] (Warmup) Chain 3: Iteration: 3 / 8 [ 37%] (Warmup) Chain 3: Iteration: 4 / 8 [ 50%] (Warmup) Chain 3: Iteration: 5 / 8 [ 62%] (Sampling) Chain 3: Iteration: 6 / 8 [ 75%] (Sampling) Chain 3: Iteration: 7 / 8 [ 87%] (Sampling) Chain 3: Iteration: 8 / 8 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.008 seconds (Warm-up) Chain 3: 0.006 seconds (Sampling) Chain 3: 0.014 seconds (Total) Chain 3: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0.000115 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 1.15 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: WARNING: No variance estimation is Chain 4: performed for num_warmup < 20 Chain 4: Chain 4: Iteration: 1 / 8 [ 12%] (Warmup) Chain 4: Iteration: 2 / 8 [ 25%] (Warmup) Chain 4: Iteration: 3 / 8 [ 37%] (Warmup) Chain 4: Iteration: 4 / 8 [ 50%] (Warmup) Chain 4: Iteration: 5 / 8 [ 62%] (Sampling) Chain 4: Iteration: 6 / 8 [ 75%] (Sampling) Chain 4: Iteration: 7 / 8 [ 87%] (Sampling) Chain 4: Iteration: 8 / 8 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.002 seconds (Warm-up) Chain 4: 0.002 seconds (Sampling) Chain 4: 0.004 seconds (Total) Chain 4: Formatting data for a single-season multispecies occupancy model with data augmentation for never-observed species. For details, see make_flocker_data_augmented. 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Compiling Stan program... 0,248,Js_of_ocaml__Js.Error,18,TypeError: not a function Error in `FUN()`: ! In path: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/flocker.Rcheck/tests/testthat/setup.R" Caused by error in `model_cppcode$errors`: ! $ operator is invalid for atomic vectors Backtrace: ▆ 1. ├─testthat::test_check("flocker") 2. │ └─testthat::test_dir(...) 3. │ └─testthat:::test_files(...) 4. │ └─testthat:::test_files_serial(...) 5. │ └─testthat:::test_files_setup_state(...) 6. │ └─testthat::source_test_setup(".", env) 7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE) 8. │ └─base::lapply(...) 9. │ └─testthat (local) FUN(X[[i]], ...) 10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap) 11. │ ├─base::withCallingHandlers(...) 12. │ └─base::eval(exprs, env) 13. │ └─base::eval(exprs, env) 14. │ ├─base::suppressWarnings(...) at tests/testthat/setup.R:6:1 15. │ │ └─base::withCallingHandlers(...) 16. │ └─flocker::flock(...) at tests/testthat/setup.R:31:3 17. │ └─flocker:::flock_(...) 18. │ └─flocker:::flocker_fit_code_util(...) 19. │ └─brms::brm(...) 20. │ └─brms::do_call(compile_model, compile_args) 21. │ └─brms:::eval2(call, envir = args, enclos = envir) 22. │ └─base::eval(expr, envir, ...) 23. │ └─base::eval(expr, envir, ...) 24. │ └─brms (local) .fun(...) 25. │ └─brms (local) .compile_model(model, ...) 26. │ ├─brms:::eval_silent(...) 27. │ │ └─base::eval(expr, envir) 28. │ │ └─base::eval(expr, envir) 29. │ └─brms::do_call(rstan::stan_model, args) 30. │ └─brms:::eval2(call, envir = args, enclos = envir) 31. │ └─base::eval(expr, envir, ...) 32. │ └─base::eval(expr, envir, ...) 33. │ └─rstan (local) .fun(model_code = .x1) 34. │ └─rstan::stanc(...) 35. └─base::.handleSimpleError(...) 36. └─testthat (local) h(simpleError(msg, call)) 37. └─rlang::abort(...) Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0-0
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [196s/247s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(flocker) > > test_check("flocker") Formatting data for a single-season occupancy model. For details, see make_flocker_data_static. All warnings and error messages should be interpreted in the context of make_flocker_data_static Compiling Stan program... Start sampling SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.000383 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 3.83 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: WARNING: No variance estimation is Chain 1: performed for num_warmup < 20 Chain 1: Chain 1: Iteration: 1 / 8 [ 12%] (Warmup) Chain 1: Iteration: 2 / 8 [ 25%] (Warmup) Chain 1: Iteration: 3 / 8 [ 37%] (Warmup) Chain 1: Iteration: 4 / 8 [ 50%] (Warmup) Chain 1: Iteration: 5 / 8 [ 62%] (Sampling) Chain 1: Iteration: 6 / 8 [ 75%] (Sampling) Chain 1: Iteration: 7 / 8 [ 87%] (Sampling) Chain 1: Iteration: 8 / 8 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.008 seconds (Warm-up) Chain 1: 0.014 seconds (Sampling) Chain 1: 0.022 seconds (Total) Chain 1: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.000255 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 2.55 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: WARNING: No variance estimation is Chain 2: performed for num_warmup < 20 Chain 2: Chain 2: Iteration: 1 / 8 [ 12%] (Warmup) Chain 2: Iteration: 2 / 8 [ 25%] (Warmup) Chain 2: Iteration: 3 / 8 [ 37%] (Warmup) Chain 2: Iteration: 4 / 8 [ 50%] (Warmup) Chain 2: Iteration: 5 / 8 [ 62%] (Sampling) Chain 2: Iteration: 6 / 8 [ 75%] (Sampling) Chain 2: Iteration: 7 / 8 [ 87%] (Sampling) Chain 2: Iteration: 8 / 8 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.02 seconds (Warm-up) Chain 2: 0.024 seconds (Sampling) Chain 2: 0.044 seconds (Total) Chain 2: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 0.000227 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 2.27 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: WARNING: No variance estimation is Chain 3: performed for num_warmup < 20 Chain 3: Chain 3: Iteration: 1 / 8 [ 12%] (Warmup) Chain 3: Iteration: 2 / 8 [ 25%] (Warmup) Chain 3: Iteration: 3 / 8 [ 37%] (Warmup) Chain 3: Iteration: 4 / 8 [ 50%] (Warmup) Chain 3: Iteration: 5 / 8 [ 62%] (Sampling) Chain 3: Iteration: 6 / 8 [ 75%] (Sampling) Chain 3: Iteration: 7 / 8 [ 87%] (Sampling) Chain 3: Iteration: 8 / 8 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.028 seconds (Warm-up) Chain 3: 0.023 seconds (Sampling) Chain 3: 0.051 seconds (Total) Chain 3: SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 0.000255 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 2.55 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: WARNING: No variance estimation is Chain 4: performed for num_warmup < 20 Chain 4: Chain 4: Iteration: 1 / 8 [ 12%] (Warmup) Chain 4: Iteration: 2 / 8 [ 25%] (Warmup) Chain 4: Iteration: 3 / 8 [ 37%] (Warmup) Chain 4: Iteration: 4 / 8 [ 50%] (Warmup) Chain 4: Iteration: 5 / 8 [ 62%] (Sampling) Chain 4: Iteration: 6 / 8 [ 75%] (Sampling) Chain 4: Iteration: 7 / 8 [ 87%] (Sampling) Chain 4: Iteration: 8 / 8 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.012 seconds (Warm-up) Chain 4: 0.008 seconds (Sampling) Chain 4: 0.02 seconds (Total) Chain 4: Formatting data for a single-season multispecies occupancy model with data augmentation for never-observed species. For details, see make_flocker_data_augmented. 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Compiling Stan program... 0,248,Js_of_ocaml__Js.Error,18,TypeError: not a function Error in `FUN()`: ! In path: "/data/gannet/ripley/R/packages/tests-clang/flocker.Rcheck/tests/testthat/setup.R" Caused by error in `model_cppcode$errors`: ! $ operator is invalid for atomic vectors Backtrace: ▆ 1. ├─testthat::test_check("flocker") 2. │ └─testthat::test_dir(...) 3. │ └─testthat:::test_files(...) 4. │ └─testthat:::test_files_serial(...) 5. │ └─testthat:::test_files_setup_state(...) 6. │ └─testthat::source_test_setup(".", env) 7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE) 8. │ └─base::lapply(...) 9. │ └─testthat (local) FUN(X[[i]], ...) 10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap) 11. │ ├─base::withCallingHandlers(...) 12. │ └─base::eval(exprs, env) 13. │ └─base::eval(exprs, env) 14. │ ├─base::suppressWarnings(...) at tests/testthat/setup.R:6:1 15. │ │ └─base::withCallingHandlers(...) 16. │ └─flocker::flock(...) at tests/testthat/setup.R:31:3 17. │ └─flocker:::flock_(...) 18. │ └─flocker:::flocker_fit_code_util(...) 19. │ └─brms::brm(...) 20. │ └─brms::do_call(compile_model, compile_args) 21. │ └─brms:::eval2(call, envir = args, enclos = envir) 22. │ └─base::eval(expr, envir, ...) 23. │ └─base::eval(expr, envir, ...) 24. │ └─brms (local) .fun(...) 25. │ └─brms (local) .compile_model(model, ...) 26. │ ├─brms:::eval_silent(...) 27. │ │ └─base::eval(expr, envir) 28. │ │ └─base::eval(expr, envir) 29. │ └─brms::do_call(rstan::stan_model, args) 30. │ └─brms:::eval2(call, envir = args, enclos = envir) 31. │ └─base::eval(expr, envir, ...) 32. │ └─base::eval(expr, envir, ...) 33. │ └─rstan (local) .fun(model_code = .x1) 34. │ └─rstan::stanc(...) 35. └─base::.handleSimpleError(...) 36. └─testthat (local) h(simpleError(msg, call)) 37. └─rlang::abort(...) Execution halted Flavor: r-devel-linux-x86_64-fedora-clang