Last updated on 2025-02-02 07:50:10 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.0 | 6.72 | 62.77 | 69.49 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2.0 | 3.78 | 43.31 | 47.09 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.0 | 186.50 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.0 | 176.99 | OK | |||
| r-devel-windows-x86_64 | 1.2.0 | 8.00 | 114.00 | 122.00 | OK | |
| r-patched-linux-x86_64 | 1.2.0 | 5.23 | 104.70 | 109.93 | OK | |
| r-release-linux-x86_64 | 1.2.0 | 4.75 | 104.76 | 109.51 | OK | |
| r-release-macos-arm64 | 1.2.0 | 56.00 | OK | |||
| r-release-macos-x86_64 | 1.2.0 | 160.00 | OK | |||
| r-release-windows-x86_64 | 1.2.0 | 8.00 | 117.00 | 125.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.0 | 53.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2.0 | 118.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.2.0 | 10.00 | 143.00 | 153.00 | OK |
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(faersquarterlydata)
>
> test_check("faersquarterlydata")
Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2
Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2
retrieving resources/1_ADR22Q1_example.xml
retrieving resources/1_ADR22Q1_example.xml
retrieving resources/1_ADR22Q1_example.xml
retrieving resources/1_ADR22Q1_example.xml
retrieving resources/1_ADR22Q1_example.xml
1 out of 1
retrieving resources/1_ADR22Q1_example.xml
1 out of 1
retrieving resources/1_ADR22Q1_example.xml
saving resources/1_ADR22Q1_example.xml into cache: resources/cache/cache_xml.Rdata
1 out of 1
retrieving resources/1_ADR22Q1_example.xml
Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2
Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2
unzipping resources/xml_files/faers_xml_2012q4.zip
unzipping resources/ascii_files//faers_ascii_2022Q4.zip
[ FAIL 4 | WARN 36 | SKIP 0 | PASS 30 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-read_func_ascii.R:23:3'): retrieve_faersascii ──────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`.
Caused by error in `arrange_date()`:
! string contains letters
Backtrace:
▆
1. ├─testthat::expect_true(...) at test-read_func_ascii.R:23:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─faersquarterlydata::retrieve_faersascii(...)
5. │ └─... %>% ...
6. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.)))
7. │ ├─dplyr::mutate(.tbl, !!!funs)
8. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs)
9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
10. │ ├─base::withCallingHandlers(...)
11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
12. │ └─mask$eval_all_mutate(quo)
13. │ └─dplyr (local) eval()
14. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt)
15. │ └─rlang::eval_bare(`_quo`, base::parent.frame())
16. ├─rlang (local) arrange_date(.)
17. ├─faersquarterlydata::arrange_date(.)
18. │ └─base::stop("string contains letters")
19. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.)))
20. └─dplyr (local) h(simpleError(msg, call))
21. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-read_func_ascii.R:49:3'): unify_tabular_ascii ──────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`.
Caused by error in `arrange_date()`:
! string contains letters
Backtrace:
▆
1. ├─faersquarterlydata::retrieve_faersascii(...) at test-read_func_ascii.R:49:3
2. │ └─... %>% ...
3. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.)))
4. │ ├─dplyr::mutate(.tbl, !!!funs)
5. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs)
6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
7. │ ├─base::withCallingHandlers(...)
8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
9. │ └─mask$eval_all_mutate(quo)
10. │ └─dplyr (local) eval()
11. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt)
12. │ └─rlang::eval_bare(`_quo`, base::parent.frame())
13. ├─rlang (local) arrange_date(.)
14. ├─faersquarterlydata::arrange_date(.)
15. │ └─base::stop("string contains letters")
16. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.)))
17. └─dplyr (local) h(simpleError(msg, call))
18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-ror.R:22:3'): estimate_ror_bygroup ─────────────────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`.
Caused by error in `arrange_date()`:
! string contains letters
Backtrace:
▆
1. ├─faersquarterlydata::retrieve_faersascii(ascii_dir = "resources/test_zip_ex_dir/ASCII") at test-ror.R:22:3
2. │ └─... %>% ...
3. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.)))
4. │ ├─dplyr::mutate(.tbl, !!!funs)
5. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs)
6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
7. │ ├─base::withCallingHandlers(...)
8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
9. │ └─mask$eval_all_mutate(quo)
10. │ └─dplyr (local) eval()
11. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt)
12. │ └─rlang::eval_bare(`_quo`, base::parent.frame())
13. ├─rlang (local) arrange_date(.)
14. ├─faersquarterlydata::arrange_date(.)
15. │ └─base::stop("string contains letters")
16. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.)))
17. └─dplyr (local) h(simpleError(msg, call))
18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-summary.R:3:3'): summary_faersdata ─────────────────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`.
Caused by error in `arrange_date()`:
! string contains letters
Backtrace:
▆
1. ├─faersquarterlydata::retrieve_faersascii(ascii_dir = "resources/test_zip_ex_dir/ASCII") at test-summary.R:3:3
2. │ └─... %>% ...
3. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.)))
4. │ ├─dplyr::mutate(.tbl, !!!funs)
5. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs)
6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
7. │ ├─base::withCallingHandlers(...)
8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
9. │ └─mask$eval_all_mutate(quo)
10. │ └─dplyr (local) eval()
11. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt)
12. │ └─rlang::eval_bare(`_quo`, base::parent.frame())
13. ├─rlang (local) arrange_date(.)
14. ├─faersquarterlydata::arrange_date(.)
15. │ └─base::stop("string contains letters")
16. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.)))
17. └─dplyr (local) h(simpleError(msg, call))
18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
[ FAIL 4 | WARN 36 | SKIP 0 | PASS 30 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(faersquarterlydata)
>
> test_check("faersquarterlydata")
Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2
Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2
retrieving resources/1_ADR22Q1_example.xml
retrieving resources/1_ADR22Q1_example.xml
retrieving resources/1_ADR22Q1_example.xml
retrieving resources/1_ADR22Q1_example.xml
retrieving resources/1_ADR22Q1_example.xml
1 out of 1
retrieving resources/1_ADR22Q1_example.xml
1 out of 1
retrieving resources/1_ADR22Q1_example.xml
saving resources/1_ADR22Q1_example.xml into cache: resources/cache/cache_xml.Rdata
1 out of 1
retrieving resources/1_ADR22Q1_example.xml
Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2
Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2
unzipping resources/xml_files/faers_xml_2012q4.zip
unzipping resources/ascii_files//faers_ascii_2022Q4.zip
[ FAIL 4 | WARN 36 | SKIP 0 | PASS 30 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-read_func_ascii.R:23:3'): retrieve_faersascii ──────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`.
Caused by error in `arrange_date()`:
! string contains letters
Backtrace:
▆
1. ├─testthat::expect_true(...) at test-read_func_ascii.R:23:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─faersquarterlydata::retrieve_faersascii(...)
5. │ └─... %>% ...
6. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.)))
7. │ ├─dplyr::mutate(.tbl, !!!funs)
8. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs)
9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
10. │ ├─base::withCallingHandlers(...)
11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
12. │ └─mask$eval_all_mutate(quo)
13. │ └─dplyr (local) eval()
14. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt)
15. │ └─rlang::eval_bare(`_quo`, base::parent.frame())
16. ├─rlang (local) arrange_date(.)
17. ├─faersquarterlydata::arrange_date(.)
18. │ └─base::stop("string contains letters")
19. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.)))
20. └─dplyr (local) h(simpleError(msg, call))
21. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-read_func_ascii.R:49:3'): unify_tabular_ascii ──────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`.
Caused by error in `arrange_date()`:
! string contains letters
Backtrace:
▆
1. ├─faersquarterlydata::retrieve_faersascii(...) at test-read_func_ascii.R:49:3
2. │ └─... %>% ...
3. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.)))
4. │ ├─dplyr::mutate(.tbl, !!!funs)
5. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs)
6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
7. │ ├─base::withCallingHandlers(...)
8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
9. │ └─mask$eval_all_mutate(quo)
10. │ └─dplyr (local) eval()
11. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt)
12. │ └─rlang::eval_bare(`_quo`, base::parent.frame())
13. ├─rlang (local) arrange_date(.)
14. ├─faersquarterlydata::arrange_date(.)
15. │ └─base::stop("string contains letters")
16. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.)))
17. └─dplyr (local) h(simpleError(msg, call))
18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-ror.R:22:3'): estimate_ror_bygroup ─────────────────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`.
Caused by error in `arrange_date()`:
! string contains letters
Backtrace:
▆
1. ├─faersquarterlydata::retrieve_faersascii(ascii_dir = "resources/test_zip_ex_dir/ASCII") at test-ror.R:22:3
2. │ └─... %>% ...
3. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.)))
4. │ ├─dplyr::mutate(.tbl, !!!funs)
5. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs)
6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
7. │ ├─base::withCallingHandlers(...)
8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
9. │ └─mask$eval_all_mutate(quo)
10. │ └─dplyr (local) eval()
11. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt)
12. │ └─rlang::eval_bare(`_quo`, base::parent.frame())
13. ├─rlang (local) arrange_date(.)
14. ├─faersquarterlydata::arrange_date(.)
15. │ └─base::stop("string contains letters")
16. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.)))
17. └─dplyr (local) h(simpleError(msg, call))
18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
── Error ('test-summary.R:3:3'): summary_faersdata ─────────────────────────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`.
Caused by error in `arrange_date()`:
! string contains letters
Backtrace:
▆
1. ├─faersquarterlydata::retrieve_faersascii(ascii_dir = "resources/test_zip_ex_dir/ASCII") at test-summary.R:3:3
2. │ └─... %>% ...
3. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.)))
4. │ ├─dplyr::mutate(.tbl, !!!funs)
5. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs)
6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
7. │ ├─base::withCallingHandlers(...)
8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
9. │ └─mask$eval_all_mutate(quo)
10. │ └─dplyr (local) eval()
11. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt)
12. │ └─rlang::eval_bare(`_quo`, base::parent.frame())
13. ├─rlang (local) arrange_date(.)
14. ├─faersquarterlydata::arrange_date(.)
15. │ └─base::stop("string contains letters")
16. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.)))
17. └─dplyr (local) h(simpleError(msg, call))
18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
[ FAIL 4 | WARN 36 | SKIP 0 | PASS 30 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.