CRAN Package Check Results for Package eyeris

Last updated on 2025-10-09 23:51:12 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	3.0.0	12.03	226.72	238.75	OK
r-devel-linux-x86_64-debian-gcc	3.0.1	7.29	166.41	173.70	OK
r-devel-linux-x86_64-fedora-clang	3.0.1			358.46	OK
r-devel-linux-x86_64-fedora-gcc	3.0.1			372.74	OK
r-devel-windows-x86_64	3.0.1	20.00	275.00	295.00	OK
r-patched-linux-x86_64	3.0.1	15.18	216.03	231.21	OK
r-release-linux-x86_64	3.0.0	12.37	212.06	224.43	OK
r-release-macos-arm64	3.0.1			153.00	OK
r-release-macos-x86_64	3.0.1			228.00	OK
r-release-windows-x86_64	3.0.0	16.00	269.00	285.00	OK
r-oldrel-macos-arm64	3.0.1			140.00	NOTE
r-oldrel-macos-x86_64	3.0.1			267.00	NOTE
r-oldrel-windows-x86_64	3.0.1	23.00	336.00	359.00	ERROR

Check Details

Version: 3.0.1
Check: installed package size
Result: NOTE installed size is 5.8Mb sub-directories of 1Mb or more: doc 2.8Mb help 1.1Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 3.0.1
Check: tests
Result: ERROR Running 'testthat.R' [119s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(eyeris) eyeris v3.0.1 - Lumpy Space Princess ꒰•ᴗ•｡꒱۶ Welcome! Type ?`eyeris` to get started. > > test_check("eyeris") i [2025-10-08 09:11:04] [INFO] Created output directory: D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl/test_chunked_output v [2025-10-08 09:11:04] [OKAY] Connected to eyeris database: D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl/bids_test/derivatives/test-db.eyerisdb i [2025-10-08 09:11:04] [INFO] Exporting data types: confounds_summary i [2025-10-08 09:11:04] [INFO] Processing data type: confounds_summary i [2025-10-08 09:11:04] [INFO] Grouping tables by epoch label... i [2025-10-08 09:11:04] [INFO] Found 1 epoch label groups for confounds_summary: _nolabel i [2025-10-08 09:11:04] [INFO] Analyzing column structures within epoch group '_nolabel'... i [2025-10-08 09:11:04] [INFO] Found 2 column-compatible groups within '_nolabel': goal, stim i [2025-10-08 09:11:04] [INFO] Processing confounds_summary group 'goal' (2 tables) i [2025-10-08 09:11:04] [INFO] Using chunked processing (file size limit = 50MB < 500MB threshold) i [2025-10-08 09:11:04] [INFO] Processing with file size chunking enabled i [2025-10-08 09:11:04] [INFO] Starting chunked query processing (chunk size: 50) i [2025-10-08 09:11:04] [INFO] Query: SELECT * FROM "confounds_summary_01_task_run01_goal" UNION ALL SELECT * FROM "confounds_summary_02_task_run01_goal" i [2025-10-08 09:11:04] [INFO] Processing chunk 1: 50 rows i [2025-10-08 09:11:04] [INFO] Created output file: test-db_confounds_summary_goal_chunked_01.csv i [2025-10-08 09:11:04] [INFO] Processing chunk 2: 50 rows i [2025-10-08 09:11:04] [INFO] Processing chunk 3: 50 rows i [2025-10-08 09:11:04] [INFO] No more data to process v [2025-10-08 09:11:04] [OKAY] Chunked processing complete: i [2025-10-08 09:11:04] [INFO] Total rows: 150 i [2025-10-08 09:11:04] [INFO] Chunks: 3 i [2025-10-08 09:11:04] [INFO] Processing time: 0 seconds i [2025-10-08 09:11:04] [INFO] Average rate: 5193 rows/second i [2025-10-08 09:11:04] [INFO] Processing confounds_summary group 'stim' (1 tables) i [2025-10-08 09:11:04] [INFO] Using chunked processing (file size limit = 50MB < 500MB threshold) i [2025-10-08 09:11:04] [INFO] Processing with file size chunking enabled i [2025-10-08 09:11:04] [INFO] Starting chunked query processing (chunk size: 50) i [2025-10-08 09:11:04] [INFO] Query: SELECT * FROM "confounds_summary_01_task_run01_stim" i [2025-10-08 09:11:04] [INFO] Processing chunk 1: 50 rows i [2025-10-08 09:11:04] [INFO] Created output file: test-db_confounds_summary_stim_chunked_01.csv i [2025-10-08 09:11:04] [INFO] Processing chunk 2: 50 rows i [2025-10-08 09:11:04] [INFO] No more data to process v [2025-10-08 09:11:04] [OKAY] Chunked processing complete: i [2025-10-08 09:11:04] [INFO] Total rows: 100 i [2025-10-08 09:11:04] [INFO] Chunks: 2 i [2025-10-08 09:11:04] [INFO] Processing time: 0 seconds i [2025-10-08 09:11:04] [INFO] Average rate: 5858 rows/second v [2025-10-08 09:11:04] [OKAY] Export complete! i [2025-10-08 09:11:04] [INFO] Data types exported: 2 i [2025-10-08 09:11:04] [INFO] Total rows exported: 250 i [2025-10-08 09:11:04] [INFO] Output directory: D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl/test_chunked_output i [2025-10-08 09:11:04] [INFO] Disconnected from eyeris database i [2025-10-08 09:11:04] [INFO] Created output directory: D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl/size_test_output v [2025-10-08 09:11:05] [OKAY] Connected to eyeris database: D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl/bids_size_test/derivatives/size-test.eyerisdb i [2025-10-08 09:11:05] [INFO] Exporting data types: timeseries i [2025-10-08 09:11:05] [INFO] Processing data type: timeseries i [2025-10-08 09:11:05] [INFO] Processing timeseries group 'all' (1 tables) i [2025-10-08 09:11:05] [INFO] Using chunked processing (file size limit = 0.05MB < 500MB threshold) i [2025-10-08 09:11:05] [INFO] Processing with file size chunking enabled i [2025-10-08 09:11:05] [INFO] Starting chunked query processing (chunk size: 500) i [2025-10-08 09:11:05] [INFO] Query: SELECT * FROM "timeseries_01_test_run01" i [2025-10-08 09:11:05] [INFO] Processing chunk 1: 500 rows i [2025-10-08 09:11:05] [INFO] Created output file: size-test_timeseries_chunked_01.csv i [2025-10-08 09:11:05] [INFO] Processing chunk 2: 500 rows i [2025-10-08 09:11:05] [INFO] Starting new file due to size limit: size-test_timeseries_chunked_02.csv i [2025-10-08 09:11:05] [INFO] Created output file: size-test_timeseries_chunked_02.csv i [2025-10-08 09:11:05] [INFO] Processing chunk 3: 500 rows i [2025-10-08 09:11:05] [INFO] Starting new file due to size limit: size-test_timeseries_chunked_03.csv i [2025-10-08 09:11:05] [INFO] Created output file: size-test_timeseries_chunked_03.csv i [2025-10-08 09:11:05] [INFO] Processing chunk 4: 500 rows i [2025-10-08 09:11:05] [INFO] Starting new file due to size limit: size-test_timeseries_chunked_04.csv i [2025-10-08 09:11:05] [INFO] Created output file: size-test_timeseries_chunked_04.csv i [2025-10-08 09:11:05] [INFO] No more data to process v [2025-10-08 09:11:05] [OKAY] Chunked processing complete: i [2025-10-08 09:11:05] [INFO] Total rows: 2000 i [2025-10-08 09:11:05] [INFO] Chunks: 4 i [2025-10-08 09:11:05] [INFO] Processing time: 0.1 seconds i [2025-10-08 09:11:05] [INFO] Average rate: 13680 rows/second i [2025-10-08 09:11:05] [INFO] Finalizing 4 output files with proper numbering... i [2025-10-08 09:11:05] [INFO] Renamed: size-test_timeseries_chunked_01.csv -> size-test_timeseries_chunked_01-of-04.csv i [2025-10-08 09:11:05] [INFO] Renamed: size-test_timeseries_chunked_02.csv -> size-test_timeseries_chunked_02-of-04.csv i [2025-10-08 09:11:05] [INFO] Renamed: size-test_timeseries_chunked_03.csv -> size-test_timeseries_chunked_03-of-04.csv i [2025-10-08 09:11:05] [INFO] Renamed: size-test_timeseries_chunked_04.csv -> size-test_timeseries_chunked_04-of-04.csv v [2025-10-08 09:11:05] [OKAY] Export complete! i [2025-10-08 09:11:05] [INFO] Data types exported: 1 i [2025-10-08 09:11:05] [INFO] Total rows exported: 2000 i [2025-10-08 09:11:05] [INFO] Output directory: D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl/size_test_output i [2025-10-08 09:11:05] [INFO] Disconnected from eyeris database v [2025-10-08 09:11:07] [OKAY] Connected to eyeris database: D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl/test_bids/derivatives/user-test.eyerisdb i [2025-10-08 09:11:07] [INFO] Executing query: SELECT * FROM (SELECT * FROM "epochs_002_02_memory_run01") as combined_data WHERE 1=1 AND subject_id = '002' i [2025-10-08 09:11:07] [INFO] Executing query: SELECT * FROM (SELECT * FROM "epochs_002_02_memory_run01") as combined_data WHERE 1=1 AND subject_id = '002' AND session_id = '02' AND task_name = 'memory' i [2025-10-08 09:11:07] [INFO] Disconnected from eyeris database i [2025-10-08 09:11:09] [INFO] Executing query: SELECT * FROM (SELECT * FROM "epoch_timeseries_005_01_epochtest_run01_prepostprobe") as combined_data WHERE 1=1 AND subject_id = '005' v [2025-10-08 09:11:10] [OKAY] Running eyeris::load_asc() i [2025-10-08 09:11:10] [INFO] Processing block: block_1 v [2025-10-08 09:11:10] [OKAY] Running eyeris::deblink() for block_1 v [2025-10-08 09:11:10] [OKAY] Running eyeris::detransient() for block_1 v [2025-10-08 09:11:10] [OKAY] Running eyeris::interpolate() for block_1 v [2025-10-08 09:11:10] [OKAY] Running eyeris::lpfilt() for block_1 ! [2025-10-08 09:11:11] [WARN] Skipping eyeris::downsample() for block_1 ! [2025-10-08 09:11:11] [WARN] Skipping eyeris::bin() for block_1 ! [2025-10-08 09:11:11] [WARN] Skipping eyeris::detrend() for block_1 v [2025-10-08 09:11:11] [OKAY] Running eyeris::zscore() for block_1 i [2025-10-08 09:11:11] [INFO] Block processing summary: i [2025-10-08 09:11:11] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2025-10-08 09:11:11] [OKAY] Running eyeris::summarize_confounds() i [2025-10-08 09:11:12] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:13] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:14] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:15] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:17] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:17] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:19] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:20] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:21] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:21] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:22] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:23] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:24] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:25] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:26] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:27] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:28] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:28] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 ! [2025-10-08 09:11:35] [WARN] No detrend data found for run-01 processing file: sub-001.Rmd output file: sub-001.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-001.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-001.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANpkg/lib/4.4/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl\rmarkdown-str1ec585d475f38.html" File not found in resource path v [2025-10-08 09:11:36] [OKAY] Running eyeris::load_asc() i [2025-10-08 09:11:36] [INFO] Processing block: block_1 v [2025-10-08 09:11:36] [OKAY] Running eyeris::deblink() for block_1 v [2025-10-08 09:11:36] [OKAY] Running eyeris::detransient() for block_1 v [2025-10-08 09:11:37] [OKAY] Running eyeris::interpolate() for block_1 v [2025-10-08 09:11:37] [OKAY] Running eyeris::lpfilt() for block_1 ! [2025-10-08 09:11:37] [WARN] Skipping eyeris::downsample() for block_1 ! [2025-10-08 09:11:37] [WARN] Skipping eyeris::bin() for block_1 ! [2025-10-08 09:11:37] [WARN] Skipping eyeris::detrend() for block_1 v [2025-10-08 09:11:37] [OKAY] Running eyeris::zscore() for block_1 i [2025-10-08 09:11:37] [INFO] Block processing summary: i [2025-10-08 09:11:37] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2025-10-08 09:11:37] [OKAY] Running eyeris::summarize_confounds() i [2025-10-08 09:11:39] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:40] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:41] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:42] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:43] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:44] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:45] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:46] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:47] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:48] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:49] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:49] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:50] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:51] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:52] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:53] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:54] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:11:54] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 ! [2025-10-08 09:12:00] [WARN] No detrend data found for run-01 processing file: sub-002.Rmd output file: sub-002.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-002.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-002.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANpkg/lib/4.4/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl\rmarkdown-str1ec5842846b66.html" File not found in resource path v [2025-10-08 09:12:00] [OKAY] Running eyeris::load_asc() i [2025-10-08 09:12:01] [INFO] Processing block: block_1 v [2025-10-08 09:12:01] [OKAY] Running eyeris::deblink() for block_1 v [2025-10-08 09:12:01] [OKAY] Running eyeris::detransient() for block_1 v [2025-10-08 09:12:01] [OKAY] Running eyeris::interpolate() for block_1 v [2025-10-08 09:12:01] [OKAY] Running eyeris::lpfilt() for block_1 ! [2025-10-08 09:12:01] [WARN] Skipping eyeris::downsample() for block_1 ! [2025-10-08 09:12:01] [WARN] Skipping eyeris::bin() for block_1 ! [2025-10-08 09:12:01] [WARN] Skipping eyeris::detrend() for block_1 v [2025-10-08 09:12:01] [OKAY] Running eyeris::zscore() for block_1 i [2025-10-08 09:12:01] [INFO] Block processing summary: i [2025-10-08 09:12:01] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2025-10-08 09:12:01] [OKAY] Running eyeris::summarize_confounds() i [2025-10-08 09:12:03] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:04] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:05] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:07] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:07] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:09] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:09] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:11] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:11] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:12] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:13] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:13] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:14] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:15] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:16] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:17] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:18] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 ! [2025-10-08 09:12:22] [WARN] No detrend data found for run-01 processing file: sub-003.Rmd output file: sub-003.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-003.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-003.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANpkg/lib/4.4/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl\rmarkdown-str1ec587e33549e.html" File not found in resource path v [2025-10-08 09:12:23] [OKAY] Running eyeris::load_asc() i [2025-10-08 09:12:23] [INFO] Processing block: block_1 v [2025-10-08 09:12:23] [OKAY] Running eyeris::deblink() for block_1 v [2025-10-08 09:12:23] [OKAY] Running eyeris::detransient() for block_1 v [2025-10-08 09:12:23] [OKAY] Running eyeris::interpolate() for block_1 v [2025-10-08 09:12:23] [OKAY] Running eyeris::lpfilt() for block_1 ! [2025-10-08 09:12:24] [WARN] Skipping eyeris::downsample() for block_1 ! [2025-10-08 09:12:24] [WARN] Skipping eyeris::bin() for block_1 ! [2025-10-08 09:12:24] [WARN] Skipping eyeris::detrend() for block_1 v [2025-10-08 09:12:24] [OKAY] Running eyeris::zscore() for block_1 i [2025-10-08 09:12:24] [INFO] Block processing summary: i [2025-10-08 09:12:24] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2025-10-08 09:12:24] [OKAY] Running eyeris::summarize_confounds() i [2025-10-08 09:12:26] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:27] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:28] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:29] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:30] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:31] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:32] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:33] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:34] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:35] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:36] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:36] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:37] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:38] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:39] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:40] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:41] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-10-08 09:12:41] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 ! [2025-10-08 09:12:47] [WARN] No detrend data found for run-01 processing file: sub-004.Rmd output file: sub-004.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-004.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-004.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANpkg/lib/4.4/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl\rmarkdown-str1ec585a786146.html" File not found in resource path i [2025-10-08 09:12:49] [INFO] Disconnected from eyeris database v [2025-10-08 09:12:49] [OKAY] Connected to eyeris database: D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl/test_bids/derivatives/test-study.eyerisdb i [2025-10-08 09:12:50] [INFO] Disconnected from eyeris database i [2025-10-08 09:12:50] [INFO] Disconnected from eyeris database v [2025-10-08 09:12:50] [OKAY] Connected to eyeris database: D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl/test_bids_read/derivatives/read-test.eyerisdb i [2025-10-08 09:12:50] [INFO] Disconnected from eyeris database i [2025-10-08 09:12:51] [INFO] Disconnected from eyeris database v [2025-10-08 09:12:51] [OKAY] Connected to eyeris database: D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl/test_bids_size/derivatives/size-test.eyerisdb i [2025-10-08 09:12:51] [INFO] Disconnected from eyeris database i [2025-10-08 09:12:51] [INFO] Disconnected from eyeris database v [2025-10-08 09:12:52] [OKAY] Connected to eyeris database: D:\temp\2025_10_08_01_50_00_15188\Rtmp84hUGl/test_bids_empty/derivatives/empty-test.eyerisdb ! [2025-10-08 09:12:52] [WARN] No valid tables found in database (after excluding temp tables) i [2025-10-08 09:12:52] [INFO] Disconnected from eyeris database v [2025-10-08 09:12:52] [OKAY] Running eyeris::load_asc() i [2025-10-08 09:12:52] [INFO] Processing block: block_1 v [2025-10-08 09:12:52] [OKAY] Running eyeris::deblink() for block_1 v [2025-10-08 09:12:52] [OKAY] Running eyeris::detransient() for block_1 v [2025-10-08 09:12:52] [OKAY] Running eyeris::interpolate() for block_1 v [2025-10-08 09:12:52] [OKAY] Running eyeris::lpfilt() for block_1 ! [2025-10-08 09:12:53] [WARN] Skipping eyeris::downsample() for block_1 ! [2025-10-08 09:12:53] [WARN] Skipping eyeris::bin() for block_1 ! [2025-10-08 09:12:53] [WARN] Skipping eyeris::detrend() for block_1 v [2025-10-08 09:12:53] [OKAY] Running eyeris::zscore() for block_1 i [2025-10-08 09:12:53] [INFO] Block processing summary: i [2025-10-08 09:12:53] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2025-10-08 09:12:53] [OKAY] Running eyeris::summarize_confounds() v [2025-10-08 09:12:53] [OKAY] Running eyeris::load_asc() i [2025-10-08 09:12:53] [INFO] Binocular data detected. Processing average mode. i [2025-10-08 09:12:54] [INFO] Processing block: block_1 v [2025-10-08 09:12:54] [OKAY] Running eyeris::deblink() for block_1 v [2025-10-08 09:12:54] [OKAY] Running eyeris::detransient() for block_1 v [2025-10-08 09:12:54] [OKAY] Running eyeris::interpolate() for block_1 ! [2025-10-08 09:12:54] [WARN] No NAs detected in pupil data... Skipping interpolation! v [2025-10-08 09:12:54] [OKAY] Running eyeris::lpfilt() for block_1 ! [2025-10-08 09:12:54] [WARN] Skipping eyeris::downsample() for block_1 ! [2025-10-08 09:12:54] [WARN] Skipping eyeris::bin() for block_1 ! [2025-10-08 09:12:54] [WARN] Skipping eyeris::detrend() for block_1 v [2025-10-08 09:12:54] [OKAY] Running eyeris::zscore() for block_1 i [2025-10-08 09:12:54] [INFO] Block processing summary: i [2025-10-08 09:12:54] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2025-10-08 09:12:54] [OKAY] Running eyeris::summarize_confounds() [ FAIL 4 | WARN 0 | SKIP 0 | PASS 188 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-parallel-database.R:10:7'): manual parallel processing flag enables temporary databases ── Expected `{ ... }` to run without any errors. i Actually got a <simpleError> with text: pandoc document conversion failed with error 99 Backtrace: ▆ 1. ├─withr::with_envvar(...) at test-parallel-database.R:4:3 2. │ └─base::force(code) 3. └─testthat::expect_no_error(...) at test-parallel-database.R:9:5 ── Failure ('test-parallel-database.R:32:7'): SLURM environment variables are detected for parallel processing ── Expected `{ ... }` to run without any errors. i Actually got a <simpleError> with text: pandoc document conversion failed with error 99 Backtrace: ▆ 1. ├─withr::with_envvar(...) at test-parallel-database.R:28:3 2. │ └─base::force(code) 3. └─testthat::expect_no_error(...) at test-parallel-database.R:31:5 ── Failure ('test-parallel-database.R:52:7'): PBS environment variables are detected for parallel processing ── Expected `{ ... }` to run without any errors. i Actually got a <simpleError> with text: pandoc document conversion failed with error 99 Backtrace: ▆ 1. ├─withr::with_envvar(...) at test-parallel-database.R:48:3 2. │ └─base::force(code) 3. └─testthat::expect_no_error(...) at test-parallel-database.R:51:5 ── Failure ('test-parallel-database.R:71:5'): normal database operation works without parallel processing ── Expected `{ ... }` to run without any errors. i Actually got a <simpleError> with text: pandoc document conversion failed with error 99 [ FAIL 4 | WARN 0 | SKIP 0 | PASS 188 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64