CRAN Package Check Results for Maintainer ‘Eric W. Bridgeford <ericwb95 at gmail.com>’

Last updated on 2025-05-15 07:50:07 CEST.

Package	ERROR	NOTE	OK
causalBatch	1		12
lolR		13
mgc		5	8

Package causalBatch

Current CRAN status: ERROR: 1, OK: 12

Version: 1.3.0
Check: tests
Result: ERROR Running ‘testthat.R’ [27s/33s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(causalBatch) > > test_check("causalBatch") Adjusting for1covariate(s) or covariate level(s) Adjusting for1covariate(s) or covariate level(s) Adjusting for1covariate(s) or covariate level(s) # weights: 3 (2 variable) initial value 124.073345 final value 113.607485 converged # weights: 3 (2 variable) initial value 113.676138 iter 10 value 60.841697 iter 10 value 60.841697 iter 10 value 60.841697 final value 60.841697 converged # weights: 3 (2 variable) initial value 131.697964 final value 109.572187 converged # weights: 3 (2 variable) initial value 113.676138 final value 108.863320 converged Loading required package: ks Attaching package: 'ks' The following object is masked from 'package:testthat': compare [ FAIL 1 | WARN 1 | SKIP 3 | PASS 47 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • On CRAN (3): 'test-causal_cdcorr.R:31:3', 'test-causal_cdcorr.R:46:3', 'test-causal_cdcorr.R:89:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-causal_ccombat.R:70:3'): AIPW cComBat raises warning when few samples are retained ── `cb.correct.aipw_cComBat(...)` did not throw the expected warning. [ FAIL 1 | WARN 1 | SKIP 3 | PASS 47 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Package lolR

Current CRAN status: NOTE: 13

Version: 2.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Eric Bridgeford <ericwb95@gmail.com>’ The Description field contains et al. (2017) <arXiv:1709.01233>, we provide several methods for Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.1
Check: Rd files
Result: NOTE checkRd: (-1) lol.project.lrlda.Rd:18: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.project.lrlda.Rd:19: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.project.lrlda.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.project.lrlda.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.project.lrlda.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.project.pca.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.project.pca.Rd:17: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.project.pca.Rd:18: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.project.pca.Rd:19: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.project.pca.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.sims.fat_tails.Rd:25: Lost braces; missing escapes or markup? 25 | \item{f}{the fatness scaling of the tail. S2 = f*S1, where S1_{ij} = rho if i != j, and 1 if i == j. Defaults to \code{15}.} | ^ checkRd: (-1) lol.sims.mean_diff.Rd:36: Lost braces; missing escapes or markup? 36 | \item{s}{the scaling parameter of the covariance matrix. S_{ij} = scaling*1 if i == j, or scaling*offdiag if i != j. Defaults to \code{1}.} | ^ checkRd: (-1) lol.utils.decomp.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.utils.decomp.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.utils.decomp.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.utils.decomp.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.utils.decomp.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) lol.xval.eval.Rd:31: Lost braces; missing escapes or markup? 31 | \item{alg}{the algorithm to use for embedding. Should be a function that accepts inputs \code{X}, \code{Y}, and has a parameter for \code{alg.dimname} if \code{alg} is supervised, or just \code{X} and \code{alg.dimname} if \code{alg} is unsupervised.This algorithm should return a list containing a matrix that embeds from {d} to {r <= d} dimensions.} | ^ checkRd: (-1) lol.xval.eval.Rd:31: Lost braces; missing escapes or markup? 31 | \item{alg}{the algorithm to use for embedding. Should be a function that accepts inputs \code{X}, \code{Y}, and has a parameter for \code{alg.dimname} if \code{alg} is supervised, or just \code{X} and \code{alg.dimname} if \code{alg} is unsupervised.This algorithm should return a list containing a matrix that embeds from {d} to {r <= d} dimensions.} | ^ checkRd: (-1) lol.xval.eval.Rd:68: Lost braces 68 | \item{if ]code{rank.low == TRUE}, users cross-validation method with \code{ntrain = min((k-1)/k*n, d)} sample training sets, where \code{d} is the number of dimensions in \code{X}. This ensures that the training data is always low-rank, \code{ntrain < d + 1}. Note that the resulting training sets may have \code{ntrain < (k-1)/k*n}, but the resulting testing sets will always be properly rotated \code{ntest = n/k} to ensure no dependencies in fold-wise testing.} | ^ checkRd: (-1) lol.xval.optimal_dimselect.Rd:32: Lost braces; missing escapes or markup? 32 | \item{alg}{the algorithm to use for embedding. Should be a function that accepts inputs \code{X} and \code{Y} and embedding dimension \code{r} if \code{alg} is supervised, or just \code{X} and embedding dimension \code{r} if \code{alg} is unsupervised.This algorithm should return a list containing a matrix that embeds from {d} to {r < d} dimensions.} | ^ checkRd: (-1) lol.xval.optimal_dimselect.Rd:32: Lost braces; missing escapes or markup? 32 | \item{alg}{the algorithm to use for embedding. Should be a function that accepts inputs \code{X} and \code{Y} and embedding dimension \code{r} if \code{alg} is supervised, or just \code{X} and embedding dimension \code{r} if \code{alg} is unsupervised.This algorithm should return a list containing a matrix that embeds from {d} to {r < d} dimensions.} | ^ checkRd: (-1) lol.xval.optimal_dimselect.Rd:75: Lost braces 75 | \item{if ]code{rank.low == TRUE}, users cross-validation method with \code{ntrain = min((k-1)/k*n, d)} sample training sets, where \code{d} is the number of dimensions in \code{X}. This ensures that the training data is always low-rank, \code{ntrain < d + 1}. Note that the resulting training sets may have \code{ntrain < (k-1)/k*n}, but the resulting testing sets will always be properly rotated \code{ntest = n/k} to ensure no dependencies in fold-wise testing.} | ^ checkRd: (-1) predict.nearestCentroid.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) predict.nearestCentroid.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) predict.nearestCentroid.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) predict.randomChance.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) predict.randomChance.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) predict.randomGuess.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) predict.randomGuess.Rd:13: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 2.1
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘ggplot2’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.1
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package mgc

Current CRAN status: NOTE: 5, OK: 8

Version: 2.0.2
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘boot’ ‘energy’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.0.2
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64