Last updated on 2024-08-16 21:48:59 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.2 | 4.48 | 47.65 | 52.13 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 3.2 | 3.88 | 35.21 | 39.09 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 3.2 | 83.77 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 3.2 | 93.14 | OK | |||
| r-devel-windows-x86_64 | 3.2 | 9.00 | 262.00 | 271.00 | ERROR | |
| r-patched-linux-x86_64 | 3.2 | 8.81 | 45.00 | 53.81 | OK | |
| r-release-linux-x86_64 | 3.2 | 4.70 | 45.24 | 49.94 | OK | |
| r-release-macos-arm64 | 3.2 | 77.00 | OK | |||
| r-release-macos-x86_64 | 3.2 | 97.00 | OK | |||
| r-release-windows-x86_64 | 3.2 | 10.00 | 103.00 | 113.00 | OK | |
| r-oldrel-macos-arm64 | 3.2 | 80.00 | OK | |||
| r-oldrel-macos-x86_64 | 3.2 | 101.00 | OK | |||
| r-oldrel-windows-x86_64 | 3.2 | 11.00 | 102.00 | 113.00 | OK |
Version: 3.2
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
plotEnrich.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 3.2
Check: examples
Result: ERROR
Running examples in 'enrichR-Ex.R' failed
The error most likely occurred in:
> ### Name: plotEnrich
> ### Title: plotEnrich
> ### Aliases: plotEnrich
>
> ### ** Examples
>
> if (getOption("enrichR.live")) {
+ dbs <- listEnrichrDbs()
+ enrichRLive <- TRUE
+ if (is.null(dbs)) enrichRLive <- FALSE
+ dbs <- c("GO_Molecular_Function_2018", "GO_Cellular_Component_2018",
+ "GO_Biological_Process_2018")
+ enriched <- enrichr(c("Runx1", "Gfi1", "Gfi1b", "Spi1", "Gata1", "Kdr"), dbs)
+ # Plot top 20 terms from "GO_Biological_Process_2018" and ordered by P-value
+ if (enrichRLive) {
+ plotEnrich(enriched[[3]], showTerms = 20, numChar = 50, y = "Count",
+ orderBy = "P.value")
+ }
+ }
Uploading data to Enrichr... Done.
Querying GO_Molecular_Function_2018... Done.
Querying GO_Cellular_Component_2018... Done.
Querying GO_Biological_Process_2018... Done.
Parsing results... Done.
Error in data.frame(..., check.names = FALSE) :
arguments imply differing number of rows: 2, 0
Calls: plotEnrich ... .enrichment_prep_df -> cbind -> cbind -> data.frame
Execution halted
Flavor: r-devel-windows-x86_64
Version: 3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'enrichR.Rmd' using rmarkdown
Quitting from lines 96-99 [unnamed-chunk-11] (enrichR.Rmd)
Error: processing vignette 'enrichR.Rmd' failed with diagnostics:
arguments imply differing number of rows: 2, 0
--- failed re-building 'enrichR.Rmd'
SUMMARY: processing the following file failed:
'enrichR.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
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