CRAN Package Check Results for Package ecostats

Last updated on 2025-02-23 15:49:41 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.1 11.75 323.64 335.39 OK
r-devel-linux-x86_64-debian-gcc 1.2.1 7.69 224.95 232.64 OK
r-devel-linux-x86_64-fedora-clang 1.2.1 451.45 ERROR
r-devel-linux-x86_64-fedora-gcc 1.2.1 458.91 ERROR
r-devel-macos-arm64 1.2.1 176.00 OK
r-devel-macos-x86_64 1.2.1 532.00 OK
r-devel-windows-x86_64 1.2.1 14.00 289.00 303.00 OK
r-patched-linux-x86_64 1.2.1 11.66 308.60 320.26 OK
r-release-linux-x86_64 1.2.1 9.60 304.15 313.75 OK
r-release-macos-arm64 1.2.1 175.00 OK
r-release-macos-x86_64 1.2.1 411.00 OK
r-release-windows-x86_64 1.2.1 14.00 289.00 303.00 OK
r-oldrel-macos-arm64 1.2.1 257.00 OK
r-oldrel-macos-x86_64 1.2.1 472.00 OK
r-oldrel-windows-x86_64 1.2.1 17.00 381.00 398.00 OK

Check Details

Version: 1.2.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Chapter10Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter10Solutions.Rmd’ --- re-building ‘Chapter11Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter11Solutions.Rmd’ --- re-building ‘Chapter12Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter12Solutions.Rmd’ --- re-building ‘Chapter13Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.3-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33249 bytes Input file size = 33375 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25542 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25542 Output IDAT size = 25542 bytes (7707 bytes decrease) Output file size = 25620 bytes (7755 bytes = 23.24% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.5-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35853 bytes Input file size = 35979 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27814 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27814 Output IDAT size = 27814 bytes (8039 bytes decrease) Output file size = 27892 bytes (8087 bytes = 22.48% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.6-1.png 576x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29834 bytes Input file size = 29948 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23479 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23479 Output IDAT size = 23479 bytes (6355 bytes decrease) Output file size = 23557 bytes (6391 bytes = 21.34% decrease) --- finished re-building ‘Chapter13Solutions.Rmd’ --- re-building ‘Chapter14Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter14Solutions.Rmd’ --- re-building ‘Chapter15Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter15Solutions.Rmd’ --- re-building ‘Chapter16Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter16Solutions.Rmd’ --- re-building ‘Chapter17Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.1-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56279 bytes Input file size = 56429 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45112 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45112 Output IDAT size = 45112 bytes (11167 bytes decrease) Output file size = 45190 bytes (11239 bytes = 19.92% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.2-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49736 bytes Input file size = 49886 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40270 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40270 Output IDAT size = 40270 bytes (9466 bytes decrease) Output file size = 40348 bytes (9538 bytes = 19.12% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.2-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56603 bytes Input file size = 56753 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44628 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44628 Output IDAT size = 44628 bytes (11975 bytes decrease) Output file size = 44706 bytes (12047 bytes = 21.23% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.2variation-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46188 bytes Input file size = 46326 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37429 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37429 Output IDAT size = 37429 bytes (8759 bytes decrease) Output file size = 37507 bytes (8819 bytes = 19.04% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.3cord-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 87873 bytes Input file size = 88071 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 67471 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 67471 Output IDAT size = 67471 bytes (20402 bytes decrease) Output file size = 67549 bytes (20522 bytes = 23.30% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.3X-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 85102 bytes Input file size = 85300 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65844 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65844 Output IDAT size = 65844 bytes (19258 bytes decrease) Output file size = 65922 bytes (19378 bytes = 22.72% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.3-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 62317 bytes Input file size = 62479 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42015 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42015 Output IDAT size = 42015 bytes (20302 bytes decrease) Output file size = 42093 bytes (20386 bytes = 32.63% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.4-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39496 bytes Input file size = 39622 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32728 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32728 Output IDAT size = 32728 bytes (6768 bytes decrease) Output file size = 32806 bytes (6816 bytes = 17.20% decrease) --- finished re-building ‘Chapter17Solutions.Rmd’ --- re-building ‘Chapter1Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/proptest graph-1.png 480x288 pixels, 8 bits/pixel, 244 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2638 bytes Input file size = 3460 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2169 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2152 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2152 Output IDAT size = 2152 bytes (486 bytes decrease) Output file size = 2230 bytes (1230 bytes = 35.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/ravens plot-1.png 480x288 pixels, 8 bits/pixel, 234 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2701 bytes Input file size = 3493 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2172 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2172 Output IDAT size = 2172 bytes (529 bytes decrease) Output file size = 2250 bytes (1243 bytes = 35.59% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/guineapigs plot-1.png 576x288 pixels, 8 bits/pixel, 242 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2974 bytes Input file size = 3790 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2525 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2525 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2525 Output IDAT size = 2525 bytes (449 bytes decrease) Output file size = 2603 bytes (1187 bytes = 31.32% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/Code 1.2-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26380 bytes Input file size = 26494 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21470 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21470 Output IDAT size = 21470 bytes (4910 bytes decrease) Output file size = 21548 bytes (4946 bytes = 18.67% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/Code 1.3-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15892 bytes Input file size = 15982 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12332 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12332 Output IDAT size = 12332 bytes (3560 bytes decrease) Output file size = 12410 bytes (3572 bytes = 22.35% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/global plants-1.png 384x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6537 bytes Input file size = 7395 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5928 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5898 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5898 Output IDAT size = 5898 bytes (639 bytes decrease) Output file size = 5976 bytes (1419 bytes = 19.19% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/global plants logHt-1.png 384x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6495 bytes Input file size = 7353 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5760 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5734 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5734 Output IDAT size = 5734 bytes (761 bytes decrease) Output file size = 5812 bytes (1541 bytes = 20.96% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/seaweed plot-1.png 384x384 pixels, 8 bits/pixel, 242 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3503 bytes Input file size = 4319 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2836 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2836 Output IDAT size = 2836 bytes (667 bytes decrease) Output file size = 2914 bytes (1405 bytes = 32.53% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/seaweed transform-1.png 768x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11085 bytes Input file size = 11955 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9869 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9810 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9810 Output IDAT size = 9810 bytes (1275 bytes decrease) Output file size = 9888 bytes (2067 bytes = 17.29% decrease) --- finished re-building ‘Chapter1Solutions.Rmd’ --- re-building ‘Chapter2Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapig qqplots-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14659 bytes Input file size = 14749 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10901 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10901 Output IDAT size = 10901 bytes (3758 bytes decrease) Output file size = 10979 bytes (3770 bytes = 25.56% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapig qqplots-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14738 bytes Input file size = 14828 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10882 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10882 Output IDAT size = 10882 bytes (3856 bytes decrease) Output file size = 10960 bytes (3868 bytes = 26.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality scatterplot-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5049 bytes Input file size = 5904 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4487 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4464 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4464 Output IDAT size = 4464 bytes (585 bytes decrease) Output file size = 4542 bytes (1362 bytes = 23.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality resplots-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17502 bytes Input file size = 17604 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12625 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12625 Output IDAT size = 12625 bytes (4877 bytes decrease) Output file size = 12703 bytes (4901 bytes = 27.84% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality resplots-2.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7163 bytes Input file size = 8021 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6650 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6544 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6544 Output IDAT size = 6544 bytes (619 bytes decrease) Output file size = 6622 bytes (1399 bytes = 17.44% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality simenvelope-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14262 bytes Input file size = 14352 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10588 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10588 Output IDAT size = 10588 bytes (3674 bytes decrease) Output file size = 10666 bytes (3686 bytes = 25.68% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality simenvelope-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13361 bytes Input file size = 13451 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10033 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10033 Output IDAT size = 10033 bytes (3328 bytes decrease) Output file size = 10111 bytes (3340 bytes = 24.83% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7361 bytes Input file size = 8219 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6792 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6733 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6733 Output IDAT size = 6733 bytes (628 bytes decrease) Output file size = 6811 bytes (1408 bytes = 17.13% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20132 bytes Input file size = 20234 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14008 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14008 Output IDAT size = 14008 bytes (6124 bytes decrease) Output file size = 14086 bytes (6148 bytes = 30.38% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14510 bytes Input file size = 14600 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10670 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10670 Output IDAT size = 10670 bytes (3840 bytes decrease) Output file size = 10748 bytes (3852 bytes = 26.38% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9401 bytes Input file size = 10271 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8765 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8656 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8656 Output IDAT size = 8656 bytes (745 bytes decrease) Output file size = 8734 bytes (1537 bytes = 14.96% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24947 bytes Input file size = 25061 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17590 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17590 Output IDAT size = 17590 bytes (7357 bytes decrease) Output file size = 17668 bytes (7393 bytes = 29.50% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15012 bytes Input file size = 15102 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11186 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11186 Output IDAT size = 11186 bytes (3826 bytes decrease) Output file size = 11264 bytes (3838 bytes = 25.41% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12707 bytes Input file size = 12797 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9422 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9422 Output IDAT size = 9422 bytes (3285 bytes decrease) Output file size = 9500 bytes (3297 bytes = 25.76% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14222 bytes Input file size = 14312 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10575 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10575 Output IDAT size = 10575 bytes (3647 bytes decrease) Output file size = 10653 bytes (3659 bytes = 25.57% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform slplot-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14411 bytes Input file size = 14501 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10756 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10756 Output IDAT size = 10756 bytes (3655 bytes decrease) Output file size = 10834 bytes (3667 bytes = 25.29% decrease) --- finished re-building ‘Chapter2Solutions.Rmd’ --- re-building ‘Chapter3Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter3Solutions.Rmd’ --- re-building ‘Chapter4Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter4Solutions.Rmd’ --- re-building ‘Chapter5Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter5Solutions.Rmd’ --- re-building ‘Chapter6Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter6Solutions_files/figure-html/fig6.1-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16554 bytes Input file size = 16656 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12889 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12889 Output IDAT size = 12889 bytes (3665 bytes decrease) Output file size = 12967 bytes (3689 bytes = 22.15% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter6Solutions_files/figure-html/code62-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31444 bytes Input file size = 31558 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24705 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24705 Output IDAT size = 24705 bytes (6739 bytes decrease) Output file size = 24783 bytes (6775 bytes = 21.47% decrease) Quitting from lines 80-81 [code64] (Chapter6Solutions.Rmd) Error: processing vignette 'Chapter6Solutions.Rmd' failed with diagnostics: Profiling over both the residual variance and fixed effects is not numerically consistent with profiling over the fixed effects only (relative difference: 1); consider adjusting devmatchtol --- failed re-building ‘Chapter6Solutions.Rmd’ --- re-building ‘Chapter7Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter7Solutions.Rmd’ --- re-building ‘Chapter8Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box82-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24559 bytes Input file size = 24661 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17849 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17849 Output IDAT size = 17849 bytes (6710 bytes decrease) Output file size = 17927 bytes (6734 bytes = 27.31% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box82-2.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20068 bytes Input file size = 20170 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15130 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15130 Output IDAT size = 15130 bytes (4938 bytes decrease) Output file size = 15208 bytes (4962 bytes = 24.60% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box84-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 58111 bytes Input file size = 58273 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49399 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49399 Output IDAT size = 49399 bytes (8712 bytes decrease) Output file size = 49477 bytes (8796 bytes = 15.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box85-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35038 bytes Input file size = 35164 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24590 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24590 Output IDAT size = 24590 bytes (10448 bytes decrease) Output file size = 24668 bytes (10496 bytes = 29.85% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box85-2.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28121 bytes Input file size = 28235 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19464 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19464 Output IDAT size = 19464 bytes (8657 bytes decrease) Output file size = 19542 bytes (8693 bytes = 30.79% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box86-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24383 bytes Input file size = 24485 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20155 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20155 Output IDAT size = 20155 bytes (4228 bytes decrease) Output file size = 20233 bytes (4252 bytes = 17.37% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box87-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 30890 bytes Input file size = 31784 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29983 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 29385 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 28884 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 28504 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 28504 Output IDAT size = 28504 bytes (2386 bytes decrease) Output file size = 28582 bytes (3202 bytes = 10.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box87 sim-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 26940 bytes Input file size = 27834 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26077 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 25500 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25468 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25468 Output IDAT size = 25468 bytes (1472 bytes decrease) Output file size = 25546 bytes (2288 bytes = 8.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box88-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 32345 bytes Input file size = 33239 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31356 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30806 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30806 Output IDAT size = 30806 bytes (1539 bytes decrease) Output file size = 30884 bytes (2355 bytes = 7.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box89-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13625 bytes Input file size = 13715 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10768 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10768 Output IDAT size = 10768 bytes (2857 bytes decrease) Output file size = 10846 bytes (2869 bytes = 20.92% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box89-2.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13992 bytes Input file size = 14082 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10849 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10849 Output IDAT size = 10849 bytes (3143 bytes decrease) Output file size = 10927 bytes (3155 bytes = 22.40% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex86-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 32203 bytes Input file size = 33097 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31273 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30739 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30739 Output IDAT size = 30739 bytes (1464 bytes decrease) Output file size = 30817 bytes (2280 bytes = 6.89% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex87-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12364 bytes Input file size = 12454 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9756 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9756 Output IDAT size = 9756 bytes (2608 bytes decrease) Output file size = 9834 bytes (2620 bytes = 21.04% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex87-2.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13512 bytes Input file size = 13602 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10603 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10603 Output IDAT size = 10603 bytes (2909 bytes decrease) Output file size = 10681 bytes (2921 bytes = 21.47% decrease) --- finished re-building ‘Chapter8Solutions.Rmd’ --- re-building ‘Chapter9Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter9Solutions.Rmd’ --- re-building ‘ecostats.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/unnamed-chunk-1-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 98716 bytes Input file size = 98938 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 80958 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 80958 Output IDAT size = 80958 bytes (17758 bytes decrease) Output file size = 81036 bytes (17902 bytes = 18.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/unnamed-chunk-2-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17268 bytes Input file size = 17370 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13143 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13143 Output IDAT size = 13143 bytes (4125 bytes decrease) Output file size = 13221 bytes (4149 bytes = 23.89% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/aphidData-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32824 bytes Input file size = 32950 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25167 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25167 Output IDAT size = 25167 bytes (7657 bytes decrease) Output file size = 25245 bytes (7705 bytes = 23.38% decrease) --- finished re-building ‘ecostats.Rmd’ SUMMARY: processing the following file failed: ‘Chapter6Solutions.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Chapter10Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter10Solutions.Rmd’ --- re-building ‘Chapter11Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter11Solutions.Rmd’ --- re-building ‘Chapter12Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter12Solutions.Rmd’ --- re-building ‘Chapter13Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.3-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33249 bytes Input file size = 33375 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25542 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25542 Output IDAT size = 25542 bytes (7707 bytes decrease) Output file size = 25620 bytes (7755 bytes = 23.24% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.5-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35853 bytes Input file size = 35979 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27814 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27814 Output IDAT size = 27814 bytes (8039 bytes decrease) Output file size = 27892 bytes (8087 bytes = 22.48% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter13Solutions_files/figure-html/code13.6-1.png 576x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29834 bytes Input file size = 29948 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23479 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23479 Output IDAT size = 23479 bytes (6355 bytes decrease) Output file size = 23557 bytes (6391 bytes = 21.34% decrease) --- finished re-building ‘Chapter13Solutions.Rmd’ --- re-building ‘Chapter14Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter14Solutions.Rmd’ --- re-building ‘Chapter15Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter15Solutions.Rmd’ --- re-building ‘Chapter16Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter16Solutions.Rmd’ --- re-building ‘Chapter17Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.1-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56582 bytes Input file size = 56732 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45153 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45153 Output IDAT size = 45153 bytes (11429 bytes decrease) Output file size = 45231 bytes (11501 bytes = 20.27% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.2-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49349 bytes Input file size = 49499 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40326 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40326 Output IDAT size = 40326 bytes (9023 bytes decrease) Output file size = 40404 bytes (9095 bytes = 18.37% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.2-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56803 bytes Input file size = 56953 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44992 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44992 Output IDAT size = 44992 bytes (11811 bytes decrease) Output file size = 45070 bytes (11883 bytes = 20.86% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.2variation-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46907 bytes Input file size = 47045 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37717 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37717 Output IDAT size = 37717 bytes (9190 bytes decrease) Output file size = 37795 bytes (9250 bytes = 19.66% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.3cord-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 86495 bytes Input file size = 86693 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66327 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66327 Output IDAT size = 66327 bytes (20168 bytes decrease) Output file size = 66405 bytes (20288 bytes = 23.40% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.3X-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 84776 bytes Input file size = 84974 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65234 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65234 Output IDAT size = 65234 bytes (19542 bytes decrease) Output file size = 65312 bytes (19662 bytes = 23.14% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/code17.3-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 67632 bytes Input file size = 67806 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46378 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46378 Output IDAT size = 46378 bytes (21254 bytes decrease) Output file size = 46456 bytes (21350 bytes = 31.49% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter17Solutions_files/figure-html/ex17.4-1.png 672x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39593 bytes Input file size = 39719 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32795 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32795 Output IDAT size = 32795 bytes (6798 bytes decrease) Output file size = 32873 bytes (6846 bytes = 17.24% decrease) --- finished re-building ‘Chapter17Solutions.Rmd’ --- re-building ‘Chapter1Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/proptest graph-1.png 480x288 pixels, 8 bits/pixel, 244 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2638 bytes Input file size = 3460 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2169 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2152 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2152 Output IDAT size = 2152 bytes (486 bytes decrease) Output file size = 2230 bytes (1230 bytes = 35.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/ravens plot-1.png 480x288 pixels, 8 bits/pixel, 234 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2701 bytes Input file size = 3493 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2172 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2172 Output IDAT size = 2172 bytes (529 bytes decrease) Output file size = 2250 bytes (1243 bytes = 35.59% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/guineapigs plot-1.png 576x288 pixels, 8 bits/pixel, 242 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2974 bytes Input file size = 3790 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2525 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2525 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2525 Output IDAT size = 2525 bytes (449 bytes decrease) Output file size = 2603 bytes (1187 bytes = 31.32% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/Code 1.2-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26378 bytes Input file size = 26492 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21456 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21456 Output IDAT size = 21456 bytes (4922 bytes decrease) Output file size = 21534 bytes (4958 bytes = 18.72% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/Code 1.3-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15864 bytes Input file size = 15954 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12330 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12330 Output IDAT size = 12330 bytes (3534 bytes decrease) Output file size = 12408 bytes (3546 bytes = 22.23% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/global plants-1.png 384x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6537 bytes Input file size = 7395 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5928 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5898 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5898 Output IDAT size = 5898 bytes (639 bytes decrease) Output file size = 5976 bytes (1419 bytes = 19.19% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/global plants logHt-1.png 384x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6495 bytes Input file size = 7353 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5760 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5734 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5734 Output IDAT size = 5734 bytes (761 bytes decrease) Output file size = 5812 bytes (1541 bytes = 20.96% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/seaweed plot-1.png 384x384 pixels, 8 bits/pixel, 242 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3503 bytes Input file size = 4319 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2836 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2836 Output IDAT size = 2836 bytes (667 bytes decrease) Output file size = 2914 bytes (1405 bytes = 32.53% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter1Solutions_files/figure-html/seaweed transform-1.png 768x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11085 bytes Input file size = 11955 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9869 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9810 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9810 Output IDAT size = 9810 bytes (1275 bytes decrease) Output file size = 9888 bytes (2067 bytes = 17.29% decrease) --- finished re-building ‘Chapter1Solutions.Rmd’ --- re-building ‘Chapter2Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapig qqplots-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14657 bytes Input file size = 14747 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10897 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10897 Output IDAT size = 10897 bytes (3760 bytes decrease) Output file size = 10975 bytes (3772 bytes = 25.58% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapig qqplots-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14754 bytes Input file size = 14844 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10870 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10870 Output IDAT size = 10870 bytes (3884 bytes decrease) Output file size = 10948 bytes (3896 bytes = 26.25% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality scatterplot-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5049 bytes Input file size = 5904 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4487 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4464 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4464 Output IDAT size = 4464 bytes (585 bytes decrease) Output file size = 4542 bytes (1362 bytes = 23.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality resplots-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17502 bytes Input file size = 17604 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12625 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12625 Output IDAT size = 12625 bytes (4877 bytes decrease) Output file size = 12703 bytes (4901 bytes = 27.84% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality resplots-2.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7163 bytes Input file size = 8021 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6650 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6544 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6544 Output IDAT size = 6544 bytes (619 bytes decrease) Output file size = 6622 bytes (1399 bytes = 17.44% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality simenvelope-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14222 bytes Input file size = 14312 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10520 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10520 Output IDAT size = 10520 bytes (3702 bytes decrease) Output file size = 10598 bytes (3714 bytes = 25.95% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/waterQuality simenvelope-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13366 bytes Input file size = 13456 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10039 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10039 Output IDAT size = 10039 bytes (3327 bytes decrease) Output file size = 10117 bytes (3339 bytes = 24.81% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7361 bytes Input file size = 8219 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6792 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6733 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6733 Output IDAT size = 6733 bytes (628 bytes decrease) Output file size = 6811 bytes (1408 bytes = 17.13% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20511 bytes Input file size = 20613 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14529 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14529 Output IDAT size = 14529 bytes (5982 bytes decrease) Output file size = 14607 bytes (6006 bytes = 29.14% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants lm-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14468 bytes Input file size = 14558 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10669 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10669 Output IDAT size = 10669 bytes (3799 bytes decrease) Output file size = 10747 bytes (3811 bytes = 26.18% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9401 bytes Input file size = 10271 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8765 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8656 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8656 Output IDAT size = 8656 bytes (745 bytes decrease) Output file size = 8734 bytes (1537 bytes = 14.96% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24954 bytes Input file size = 25068 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17596 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17596 Output IDAT size = 17596 bytes (7358 bytes decrease) Output file size = 17674 bytes (7394 bytes = 29.50% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/globalPlants loglm-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14991 bytes Input file size = 15081 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11181 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11181 Output IDAT size = 11181 bytes (3810 bytes decrease) Output file size = 11259 bytes (3822 bytes = 25.34% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12707 bytes Input file size = 12797 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9422 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9422 Output IDAT size = 9422 bytes (3285 bytes decrease) Output file size = 9500 bytes (3297 bytes = 25.76% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14203 bytes Input file size = 14293 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10567 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10567 Output IDAT size = 10567 bytes (3636 bytes decrease) Output file size = 10645 bytes (3648 bytes = 25.52% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter2Solutions_files/figure-html/guineapigs ttest log-transform slplot-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14286 bytes Input file size = 14376 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10675 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10675 Output IDAT size = 10675 bytes (3611 bytes decrease) Output file size = 10753 bytes (3623 bytes = 25.20% decrease) --- finished re-building ‘Chapter2Solutions.Rmd’ --- re-building ‘Chapter3Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter3Solutions.Rmd’ --- re-building ‘Chapter4Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter4Solutions.Rmd’ --- re-building ‘Chapter5Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter5Solutions.Rmd’ --- re-building ‘Chapter6Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter6Solutions_files/figure-html/fig6.1-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16554 bytes Input file size = 16656 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12889 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12889 Output IDAT size = 12889 bytes (3665 bytes decrease) Output file size = 12967 bytes (3689 bytes = 22.15% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter6Solutions_files/figure-html/code62-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31444 bytes Input file size = 31558 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24705 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24705 Output IDAT size = 24705 bytes (6739 bytes decrease) Output file size = 24783 bytes (6775 bytes = 21.47% decrease) Quitting from lines 80-81 [code64] (Chapter6Solutions.Rmd) Error: processing vignette 'Chapter6Solutions.Rmd' failed with diagnostics: Profiling over both the residual variance and fixed effects is not numerically consistent with profiling over the fixed effects only (relative difference: 1); consider adjusting devmatchtol --- failed re-building ‘Chapter6Solutions.Rmd’ --- re-building ‘Chapter7Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter7Solutions.Rmd’ --- re-building ‘Chapter8Solutions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box82-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24559 bytes Input file size = 24661 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17849 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17849 Output IDAT size = 17849 bytes (6710 bytes decrease) Output file size = 17927 bytes (6734 bytes = 27.31% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box82-2.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20032 bytes Input file size = 20134 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15130 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15130 Output IDAT size = 15130 bytes (4902 bytes decrease) Output file size = 15208 bytes (4926 bytes = 24.47% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box84-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 58111 bytes Input file size = 58273 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49399 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49399 Output IDAT size = 49399 bytes (8712 bytes decrease) Output file size = 49477 bytes (8796 bytes = 15.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box85-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35038 bytes Input file size = 35164 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24590 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24590 Output IDAT size = 24590 bytes (10448 bytes decrease) Output file size = 24668 bytes (10496 bytes = 29.85% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box85-2.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28113 bytes Input file size = 28227 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19457 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19457 Output IDAT size = 19457 bytes (8656 bytes decrease) Output file size = 19535 bytes (8692 bytes = 30.79% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box86-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24383 bytes Input file size = 24485 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20155 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20155 Output IDAT size = 20155 bytes (4228 bytes decrease) Output file size = 20233 bytes (4252 bytes = 17.37% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box87-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 30890 bytes Input file size = 31784 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29983 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 29385 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 28884 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 28504 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 28504 Output IDAT size = 28504 bytes (2386 bytes decrease) Output file size = 28582 bytes (3202 bytes = 10.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box87 sim-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 31925 bytes Input file size = 32819 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31041 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30279 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 30218 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 29801 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 29801 Output IDAT size = 29801 bytes (2124 bytes decrease) Output file size = 29879 bytes (2940 bytes = 8.96% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box88-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 32345 bytes Input file size = 33239 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31356 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30806 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30806 Output IDAT size = 30806 bytes (1539 bytes decrease) Output file size = 30884 bytes (2355 bytes = 7.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box89-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13625 bytes Input file size = 13715 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10768 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10768 Output IDAT size = 10768 bytes (2857 bytes decrease) Output file size = 10846 bytes (2869 bytes = 20.92% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/box89-2.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13992 bytes Input file size = 14082 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10849 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10849 Output IDAT size = 10849 bytes (3143 bytes decrease) Output file size = 10927 bytes (3155 bytes = 22.40% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex86-1.png 672x336 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 32203 bytes Input file size = 33097 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31273 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30739 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 30739 Output IDAT size = 30739 bytes (1464 bytes decrease) Output file size = 30817 bytes (2280 bytes = 6.89% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex87-1.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12364 bytes Input file size = 12454 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9756 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9756 Output IDAT size = 9756 bytes (2608 bytes decrease) Output file size = 9834 bytes (2620 bytes = 21.04% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/Chapter8Solutions_files/figure-html/ex87-2.png 480x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13512 bytes Input file size = 13602 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10603 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10603 Output IDAT size = 10603 bytes (2909 bytes decrease) Output file size = 10681 bytes (2921 bytes = 21.47% decrease) --- finished re-building ‘Chapter8Solutions.Rmd’ --- re-building ‘Chapter9Solutions.Rmd’ using rmarkdown --- finished re-building ‘Chapter9Solutions.Rmd’ --- re-building ‘ecostats.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/unnamed-chunk-1-1.png 768x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 98724 bytes Input file size = 98946 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 80985 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 80985 Output IDAT size = 80985 bytes (17739 bytes decrease) Output file size = 81063 bytes (17883 bytes = 18.07% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/unnamed-chunk-2-1.png 384x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17388 bytes Input file size = 17490 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13218 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13218 Output IDAT size = 13218 bytes (4170 bytes decrease) Output file size = 13296 bytes (4194 bytes = 23.98% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/ecostats.Rcheck/vign_test/ecostats/vignettes/ecostats_files/figure-html/aphidData-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32824 bytes Input file size = 32950 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25167 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25167 Output IDAT size = 25167 bytes (7657 bytes decrease) Output file size = 25245 bytes (7705 bytes = 23.38% decrease) --- finished re-building ‘ecostats.Rmd’ SUMMARY: processing the following file failed: ‘Chapter6Solutions.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

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