CRAN Package Check Results for Package easybio

Last updated on 2024-12-22 08:50:01 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.1.0	9.17	89.89	99.06	ERROR
r-devel-linux-x86_64-debian-gcc	1.1.0	6.51	66.95	73.46	ERROR
r-devel-linux-x86_64-fedora-clang	1.1.0			173.11	OK
r-devel-linux-x86_64-fedora-gcc	1.1.0			179.79	OK
r-devel-windows-x86_64	1.1.0	11.00	110.00	121.00	OK
r-patched-linux-x86_64	1.1.0	7.90	84.11	92.01	ERROR
r-release-linux-x86_64	1.1.0	7.69	85.00	92.69	ERROR
r-release-macos-arm64	1.1.0			53.00	OK
r-release-macos-x86_64	1.1.0			160.00	OK
r-release-windows-x86_64	1.1.0	10.00	107.00	117.00	OK
r-oldrel-macos-arm64	1.1.0			66.00	OK
r-oldrel-macos-x86_64	1.1.0			88.00	OK
r-oldrel-windows-x86_64	1.1.0	13.00	127.00	140.00	OK

Check Details

Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘example-bulk-rna-seq-workflow.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-bulk-rna-seq-workflow_files/figure-html/unnamed-chunk-5-1.png 480x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37293 bytes Input file size = 37419 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26826 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26826 Output IDAT size = 26826 bytes (10467 bytes decrease) Output file size = 26904 bytes (10515 bytes = 28.10% decrease) Quitting from lines 142-145 [unnamed-chunk-8] (example-bulk-rna-seq-workflow.Rmd) Error: processing vignette 'example-bulk-rna-seq-workflow.Rmd' failed with diagnostics: there is no package called 'fgsea' --- failed re-building ‘example-bulk-rna-seq-workflow.Rmd’ --- re-building ‘example-single-cell-annotation.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-single-cell-annotation_files/figure-html/unnamed-chunk-4-1.png 720x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38828 bytes Input file size = 38954 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33406 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33406 Output IDAT size = 33406 bytes (5422 bytes decrease) Output file size = 33484 bytes (5470 bytes = 14.04% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-single-cell-annotation_files/figure-html/unnamed-chunk-9-1.png 720x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 89061 bytes Input file size = 89259 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73263 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73263 Output IDAT size = 73263 bytes (15798 bytes decrease) Output file size = 73341 bytes (15918 bytes = 17.83% decrease) --- finished re-building ‘example-single-cell-annotation.Rmd’ SUMMARY: processing the following file failed: ‘example-bulk-rna-seq-workflow.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘example-bulk-rna-seq-workflow.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-bulk-rna-seq-workflow_files/figure-html/unnamed-chunk-5-1.png 480x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37293 bytes Input file size = 37419 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26826 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26826 Output IDAT size = 26826 bytes (10467 bytes decrease) Output file size = 26904 bytes (10515 bytes = 28.10% decrease) Quitting from lines 142-145 [unnamed-chunk-8] (example-bulk-rna-seq-workflow.Rmd) Error: processing vignette 'example-bulk-rna-seq-workflow.Rmd' failed with diagnostics: there is no package called 'fgsea' --- failed re-building ‘example-bulk-rna-seq-workflow.Rmd’ --- re-building ‘example-single-cell-annotation.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-single-cell-annotation_files/figure-html/unnamed-chunk-4-1.png 720x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38828 bytes Input file size = 38954 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33406 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33406 Output IDAT size = 33406 bytes (5422 bytes decrease) Output file size = 33484 bytes (5470 bytes = 14.04% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-single-cell-annotation_files/figure-html/unnamed-chunk-9-1.png 720x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 89061 bytes Input file size = 89259 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73263 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73263 Output IDAT size = 73263 bytes (15798 bytes decrease) Output file size = 73341 bytes (15918 bytes = 17.83% decrease) --- finished re-building ‘example-single-cell-annotation.Rmd’ SUMMARY: processing the following file failed: ‘example-bulk-rna-seq-workflow.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘fgsea’ Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.0
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘fgsea’ Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘example-bulk-rna-seq-workflow.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-bulk-rna-seq-workflow_files/figure-html/unnamed-chunk-5-1.png 480x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37293 bytes Input file size = 37419 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26826 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26826 Output IDAT size = 26826 bytes (10467 bytes decrease) Output file size = 26904 bytes (10515 bytes = 28.10% decrease) Quitting from lines 142-145 [unnamed-chunk-8] (example-bulk-rna-seq-workflow.Rmd) Error: processing vignette 'example-bulk-rna-seq-workflow.Rmd' failed with diagnostics: there is no package called 'fgsea' --- failed re-building ‘example-bulk-rna-seq-workflow.Rmd’ --- re-building ‘example-single-cell-annotation.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-single-cell-annotation_files/figure-html/unnamed-chunk-4-1.png 720x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38828 bytes Input file size = 38954 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33406 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33406 Output IDAT size = 33406 bytes (5422 bytes decrease) Output file size = 33484 bytes (5470 bytes = 14.04% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-single-cell-annotation_files/figure-html/unnamed-chunk-9-1.png 720x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 89061 bytes Input file size = 89259 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73263 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73263 Output IDAT size = 73263 bytes (15798 bytes decrease) Output file size = 73341 bytes (15918 bytes = 17.83% decrease) --- finished re-building ‘example-single-cell-annotation.Rmd’ SUMMARY: processing the following file failed: ‘example-bulk-rna-seq-workflow.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64

Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘example-bulk-rna-seq-workflow.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-bulk-rna-seq-workflow_files/figure-html/unnamed-chunk-5-1.png 480x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37293 bytes Input file size = 37419 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26826 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26826 Output IDAT size = 26826 bytes (10467 bytes decrease) Output file size = 26904 bytes (10515 bytes = 28.10% decrease) Quitting from lines 142-145 [unnamed-chunk-8] (example-bulk-rna-seq-workflow.Rmd) Error: processing vignette 'example-bulk-rna-seq-workflow.Rmd' failed with diagnostics: there is no package called 'fgsea' --- failed re-building ‘example-bulk-rna-seq-workflow.Rmd’ --- re-building ‘example-single-cell-annotation.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-single-cell-annotation_files/figure-html/unnamed-chunk-4-1.png 720x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38828 bytes Input file size = 38954 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33406 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33406 Output IDAT size = 33406 bytes (5422 bytes decrease) Output file size = 33484 bytes (5470 bytes = 14.04% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/easybio.Rcheck/vign_test/easybio/vignettes/example-single-cell-annotation_files/figure-html/unnamed-chunk-9-1.png 720x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 89061 bytes Input file size = 89259 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73263 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73263 Output IDAT size = 73263 bytes (15798 bytes decrease) Output file size = 73341 bytes (15918 bytes = 17.83% decrease) --- finished re-building ‘example-single-cell-annotation.Rmd’ SUMMARY: processing the following file failed: ‘example-bulk-rna-seq-workflow.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64