CRAN Package Check Results for Package duckspatial

Last updated on 2026-08-13 11:51:07 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang					OK
r-devel-linux-x86_64-debian-gcc	1.2.1	10.20	131.01	141.21	OK
r-devel-linux-x86_64-fedora-clang	1.2.1	8.00	94.18	102.18	ERROR
r-devel-linux-x86_64-fedora-gcc	1.2.1	10.00	126.49	136.49	OK
r-devel-windows-x86_64	1.2.1	17.00	198.00	215.00	OK
r-patched-linux-x86_64	1.2.1	17.17	180.95	198.12	OK
r-release-linux-x86_64	1.2.1	10.99	179.68	190.67	OK
r-release-macos-arm64	1.2.1	3.00	38.00	41.00	OK
r-release-macos-x86_64	1.2.1	10.00	140.00	150.00	OK
r-release-windows-x86_64	1.2.1	17.00	205.00	222.00	OK
r-oldrel-macos-arm64	1.2.1	3.00	40.00	43.00	OK
r-oldrel-macos-x86_64	1.2.1	9.00	118.00	127.00	OK
r-oldrel-windows-x86_64	1.2.1	22.00	264.00	286.00	OK

Check Details

Version: 1.2.1
Check: tests
Result: ERROR Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(duckspatial) duckspatial 1.2.1 attached * Compatible with DuckDB >= v1.5.4.2 Default output has changed on v1.0.0: duckspatial now returns lazy `duckspatial_df` (dbplyr) objects instead of `sf` objects. To restore the previous behaviour: ddbs_options(mode = 'sf') > library(duckdb) Loading required package: DBI > > test_check("duckspatial") Reading layer `countries' from data source `/data/localhost/ripley/R/packages/tests-clang/duckspatial.Rcheck/duckspatial/spatial/countries.geojson' using driver `GeoJSON' Simple feature collection with 257 features and 6 fields Geometry type: POLYGON Dimension: XY Bounding box: xmin: -178.9125 ymin: -89.9 xmax: 180 ymax: 83.65187 Geodetic CRS: WGS 84 Reading layer `argentina' from data source `/data/localhost/ripley/R/packages/tests-clang/duckspatial.Rcheck/duckspatial/spatial/argentina.geojson' using driver `GeoJSON' Simple feature collection with 1 feature and 6 fields Geometry type: POLYGON Dimension: XY Bounding box: xmin: -73.52455 ymin: -52.39755 xmax: -53.62409 ymax: -21.81793 Geodetic CRS: WGS 84 duckdb is storing downloaded extensions and secrets under ~/.duckdb: ℹ /data/localhost/ripley/.duckdb This persists across sessions and is shared with the DuckDB CLI and other clients. ℹ Run duckdb(shared_home = FALSE) to use a temporary directory instead. ℹ See ?duckdb_storage for details and alternatives. duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled: • Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107). • INSTALL/LOAD of an extension will error, and automatic extension loading is off. ℹ Pass duckdb(allow_extensions = FALSE) to accept this and silence this message. ℹ Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R). ℹ See ?duckdb for details. Error in `source_dir()`: ! Failed to evaluate './setup.R'. Caused by error in `value[[3L]]()`: ! Failed to load the spatial extension. ✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ Context: load_extension ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` Backtrace: ▆ 1. └─testthat::test_check("duckspatial") 2. └─testthat::test_dir(...) 3. └─testthat:::test_files(...) 4. └─testthat:::test_files_serial(...) 5. └─testthat:::test_files_setup_state(...) 6. └─testthat::source_test_setup(".", env) 7. └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE) 8. └─base::lapply(...) 9. └─testthat (local) FUN(X[[i]], ...) 10. └─testthat::source_file(...) 11. ├─base::withCallingHandlers(...) 12. └─base::eval(exprs, env) 13. └─base::eval(exprs, env) 14. ├─duckspatial::as_duckspatial_df(argentina_sf) at ./setup.R:15:1 15. └─duckspatial:::as_duckspatial_df.sf(argentina_sf) 16. └─duckspatial:::ddbs_default_conn() 17. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...) 18. └─duckspatial::ddbs_load(conn, quiet = TRUE) 19. └─base::tryCatch(...) 20. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 21. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 22. └─value[[3L]](cond) 23. └─cli::cli_abort(...) 24. └─rlang::abort(...) Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘aw_interpolation.qmd’ using html <1b>[31m processing file: aw_interpolation.qmd <1b>[39m<1b>[31mError in `value[[3L]]()`: ! Failed to load the spatial extension. ✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ Context: load_extension ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` Backtrace: ▆ 1. └─duckspatial::ddbs_interpolate_aw(...) 2. └─duckspatial:::resolve_spatial_connections(...) 3. └─duckspatial:::ddbs_default_conn() 4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...) 5. └─duckspatial::ddbs_load(conn, quiet = TRUE) 6. └─base::tryCatch(...) 7. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. └─value[[3L]](cond) 10. └─cli::cli_abort(...) 11. └─rlang::abort(...) <1b>[39m<1b>[31m Quitting from aw_interpolation.qmd:78-89 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `value[[3L]]()`: ! Failed to load the spatial extension. ✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ Context: load_extension ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` --- Backtrace: ▆ 1. └─duckspatial::ddbs_interpolate_aw(...) 2. └─duckspatial:::resolve_spatial_connections(...) 3. └─duckspatial:::ddbs_default_conn() 4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...) 5. └─duckspatial::ddbs_load(conn, quiet = TRUE) 6. └─base::tryCatch(...) 7. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <1b>[39m<1b>[31mExecution halted <1b>[39m<1b>[33mWARN: Error encountered when rendering files<1b>[39m Error: processing vignette 'aw_interpolation.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI. ----------------------------- processing file: aw_interpolation.qmd <1b>[31mError in `value[[3L]]()`:<1b>[39m ! Failed to load the spatial extension. ✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ Context: load_extension ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` Backtrace: ▆ 1. └─duckspatial::ddbs_interpolate_aw(...) 2. └─duckspatial:::resolve_spatial_connections(...) 3. └─duckspatial:::ddbs_default_conn() 4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...) 5. └─duckspatial::ddbs_load(conn, quiet = TRUE) 6. └─base::tryCatch(...) 7. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. └─value[[3L]](cond) 10. └─cli::cli_abort(...) 11. └─rlang::abort(...) Quitting from aw_interpolation.qmd:78-89 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `value[[3L]]()`: ! Failed to load the spatial extension. ✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ Context: load_extension ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` --- Backtrace: ▆ 1. └─duckspatial::ddbs_interpolate_aw(...) 2. └─duckspatial:::resolve_spatial_connections(...) 3. └─duckspatial:::ddbs_default_conn() 4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...) 5. └─duckspatial::ddbs_load(conn, quiet = TRUE) 6. └─base::tryCatch(...) 7. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <1b>[31mExecution halted<1b>[39m <1b>[33mWARN: Error encountered when rendering files<1b>[39m Caused by error in `processx::run()`: ! System command 'quarto' failed --- failed re-building ‘aw_interpolation.qmd’ --- re-building ‘benchmark.qmd’ using html <1b>[31m processing file: benchmark.qmd <1b>[39m<1b>[31moutput file: benchmark.knit.md <1b>[39m<1b>[1mpandoc <1b>[22m to: html output-file: benchmark.html standalone: true embed-resources: true wrap: none default-image-extension: png css: - >- /data/localhost/ripley/R/test-clang/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css variables: {} <1b>[1mmetadata<1b>[22m document-css: false lang: en engines: - path: /data/localhost/ripley/Sources/quarto-1.9.36/share/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js minimal: true theme: none title: Benchmark date: '`r Sys.Date()`' code-annotations: hover urlcolor: blue vignette: | %\VignetteIndexEntry{Benchmark} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8} knitr: opts_chunk: collapse: true comment: '#>' out.width: 100% Output created: benchmark.html --- finished re-building ‘benchmark.qmd’ --- re-building ‘duckspatial.qmd’ using html <1b>[31m processing file: duckspatial.qmd <1b>[39m<1b>[31mError in `value[[3L]]()`: ! Failed to load the spatial extension. ✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ Context: load_extension ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` Backtrace: ▆ 1. └─duckspatial::ddbs_open_dataset(...) 2. └─duckspatial:::ddbs_default_conn() 3. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...) 4. └─duckspatial::ddbs_load(conn, quiet = TRUE) 5. └─base::tryCatch(...) 6. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. └─value[[3L]](cond) 9. └─cli::cli_abort(...) 10. └─rlang::abort(...) <1b>[39m<1b>[31m Quitting from duckspatial.qmd:78-87 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `value[[3L]]()`: ! Failed to load the spatial extension. ✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ Context: load_extension ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` --- Backtrace: ▆ 1. └─duckspatial::ddbs_open_dataset(...) 2. └─duckspatial:::ddbs_default_conn() 3. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...) 4. └─duckspatial::ddbs_load(conn, quiet = TRUE) 5. └─base::tryCatch(...) 6. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <1b>[39m<1b>[31mExecution halted <1b>[39m<1b>[33mWARN: Error encountered when rendering files<1b>[39m Error: processing vignette 'duckspatial.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI. ----------------------------- processing file: duckspatial.qmd <1b>[31mError in `value[[3L]]()`:<1b>[39m ! Failed to load the spatial extension. ✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ Context: load_extension ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` Backtrace: ▆ 1. └─duckspatial::ddbs_open_dataset(...) 2. └─duckspatial:::ddbs_default_conn() 3. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...) 4. └─duckspatial::ddbs_load(conn, quiet = TRUE) 5. └─base::tryCatch(...) 6. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. └─value[[3L]](cond) 9. └─cli::cli_abort(...) 10. └─rlang::abort(...) Quitting from duckspatial.qmd:78-87 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `value[[3L]]()`: ! Failed to load the spatial extension. ✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ Context: load_extension ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` --- Backtrace: ▆ 1. └─duckspatial::ddbs_open_dataset(...) 2. └─duckspatial:::ddbs_default_conn() 3. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...) 4. └─duckspatial::ddbs_load(conn, quiet = TRUE) 5. └─base::tryCatch(...) 6. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <1b>[31mExecution halted<1b>[39m <1b>[33mWARN: Error encountered when rendering files<1b>[39m Caused by error in `processx::run()`: ! System command 'quarto' failed --- failed re-building ‘duckspatial.qmd’ --- re-building ‘spatial_joins.qmd’ using html <1b>[31m processing file: spatial_joins.qmd <1b>[39m<1b>[31mError in `value[[3L]]()`: ! Failed to load the spatial extension. ✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ Context: load_extension ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` Backtrace: ▆ 1. └─duckspatial::ddbs_join(x = points_sf, y = countries_sf, join = "within") 2. └─duckspatial:::resolve_spatial_connections(...) 3. └─duckspatial:::ddbs_default_conn() 4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...) 5. └─duckspatial::ddbs_load(conn, quiet = TRUE) 6. └─base::tryCatch(...) 7. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. └─value[[3L]](cond) 10. └─cli::cli_abort(...) 11. └─rlang::abort(...) <1b>[39m<1b>[31m Quitting from spatial_joins.qmd:77-87 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `value[[3L]]()`: ! Failed to load the spatial extension. ✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ Context: load_extension ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` --- Backtrace: ▆ 1. └─duckspatial::ddbs_join(x = points_sf, y = countries_sf, join = "within") 2. └─duckspatial:::resolve_spatial_connections(...) 3. └─duckspatial:::ddbs_default_conn() 4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...) 5. └─duckspatial::ddbs_load(conn, quiet = TRUE) 6. └─base::tryCatch(...) 7. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <1b>[39m<1b>[31mExecution halted <1b>[39m<1b>[33mWARN: Error encountered when rendering files<1b>[39m Error: processing vignette 'spatial_joins.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI. ----------------------------- processing file: spatial_joins.qmd <1b>[31mError in `value[[3L]]()`:<1b>[39m ! Failed to load the spatial extension. ✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ Context: load_extension ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` Backtrace: ▆ 1. └─duckspatial::ddbs_join(x = points_sf, y = countries_sf, join = "within") 2. └─duckspatial:::resolve_spatial_connections(...) 3. └─duckspatial:::ddbs_default_conn() 4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...) 5. └─duckspatial::ddbs_load(conn, quiet = TRUE) 6. └─base::tryCatch(...) 7. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. └─value[[3L]](cond) 10. └─cli::cli_abort(...) 11. └─rlang::abort(...) Quitting from spatial_joins.qmd:77-87 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `value[[3L]]()`: ! Failed to load the spatial extension. ✖ DuckDB extension loading (INSTALL / LOAD) is disabled for this driver. ℹ Recreate the driver with duckdb(allow_extensions = TRUE) to enable it (this may crash R on a Linux build not compiled with libstdc++; see https://github.com/duckdb/duckdb-r/issues/1107). ℹ See ?duckdb for details. ℹ Context: load_extension ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` --- Backtrace: ▆ 1. └─duckspatial::ddbs_join(x = points_sf, y = countries_sf, join = "within") 2. └─duckspatial:::resolve_spatial_connections(...) 3. └─duckspatial:::ddbs_default_conn() 4. └─duckspatial::ddbs_create_conn(dbdir = "memory", ...) 5. └─duckspatial::ddbs_load(conn, quiet = TRUE) 6. └─base::tryCatch(...) 7. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <1b>[31mExecution halted<1b>[39m <1b>[33mWARN: Error encountered when rendering files<1b>[39m Caused by error in `processx::run()`: ! System command 'quarto' failed --- failed re-building ‘spatial_joins.qmd’ SUMMARY: processing the following files failed: ‘aw_interpolation.qmd’ ‘duckspatial.qmd’ ‘spatial_joins.qmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang