CRAN Package Check Results for Package duckh3

Last updated on 2026-07-21 23:58:17 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.0	1.98	54.49	56.47	OK
r-devel-linux-x86_64-debian-gcc	0.1.0	1.59	37.15	38.74	OK
r-devel-linux-x86_64-fedora-clang	0.1.0			60.84	ERROR
r-devel-linux-x86_64-fedora-gcc	0.1.0			34.77	OK
r-devel-windows-x86_64	0.1.0	4.00	67.00	71.00	OK
r-patched-linux-x86_64	0.1.0	2.18	49.34	51.52	OK
r-release-linux-x86_64	0.1.0	2.18	51.29	53.47	OK
r-release-macos-arm64	0.1.0	1.00	13.00	14.00	OK
r-release-macos-x86_64	0.1.0	2.00	42.00	44.00	OK
r-release-windows-x86_64	0.1.0	6.00	66.00	72.00	OK
r-oldrel-macos-arm64	0.1.0	1.00	18.00	19.00	OK
r-oldrel-macos-x86_64	0.1.0	2.00	67.00	69.00	OK
r-oldrel-windows-x86_64	0.1.0	5.00	83.00	88.00	OK

Check Details

Version: 0.1.0
Check: examples
Result: ERROR Running examples in ‘duckh3-Ex.R’ failed The error most likely occurred in: > ### Name: ddbh3_get_child_pos > ### Title: Get the position of an H3 cell within its parent > ### Aliases: ddbh3_get_child_pos > > ### ** Examples > > ## Load needed packages > library(duckh3) > library(dplyr) Attaching package: ‘dplyr’ The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union > > ## Setup the default connection with h3 and spatial extensions > ## This is a mandatory step to use duckh3 functions > ddbh3_default_conn(threads = 1) duckdb is keeping downloaded extensions in a temporary directory: ℹ /tmp/RtmpNQZyOL/working_dir/RtmpfB7mfP/duckdb/extensions This is removed when the R session ends, so extensions are re-downloaded each session. ℹ To keep them, point `options(duckdb.extension_directory =)` or the `DUCKDB_EXTENSION_DIRECTORY` environment variable at a permanent path. Error in `value[[3L]]()`: ! Failed to load the spatial extension. ✖ Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/tmp/RtmpNQZyOL/working_dir/RtmpfB7mfP/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager" ℹ Context: rapi_execute ℹ Error type: INVALID ℹ The binary may be corrupt or incompatible with this platform/DuckDB version. ℹ Try reinstalling with `ddbs_install(extension = 'spatial', upgrade = TRUE)` Backtrace: ▆ 1. └─duckh3::ddbh3_default_conn(threads = 1) 2. └─duckspatial::ddbs_create_conn(...) 3. └─duckspatial::ddbs_load(conn, quiet = TRUE) 4. └─base::tryCatch(...) 5. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7. └─value[[3L]](cond) 8. └─cli::cli_abort(...) 9. └─rlang::abort(...) Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [9s/16s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(duckh3) > > test_check("duckh3") duckdb is keeping downloaded extensions in a temporary directory: ℹ /tmp/RtmpNQZyOL/working_dir/RtmpoOuZzo/duckdb/extensions This is removed when the R session ends, so extensions are re-downloaded each session. ℹ To keep them, point `options(duckdb.extension_directory =)` or the `DUCKDB_EXTENSION_DIRECTORY` environment variable at a permanent path. [gannet:1683157:0:1683721] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x449) ==== backtrace (tid:1683721) ==== 0 /lib64/libucs.so.0(ucs_handle_error+0x2e4) [0x7f2b54f9bdf4] 1 /lib64/libucs.so.0(+0x17aed) [0x7f2b54f9daed] 2 /lib64/libucs.so.0(+0x17cbd) [0x7f2b54f9dcbd] 3 /lib64/libc.so.6(+0x1a040) [0x7f2b6da29040] 4 /tmp/RtmpNQZyOL/working_dir/RtmpoOuZzo/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension(+0x1196b50) [0x7f2a38ccbb50] 5 /tmp/RtmpNQZyOL/working_dir/RtmpoOuZzo/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension(+0x1168728) [0x7f2a38c9d728] 6 /tmp/RtmpNQZyOL/working_dir/RtmpoOuZzo/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension(+0x773544) [0x7f2a382a8544] 7 /tmp/RtmpNQZyOL/working_dir/RtmpoOuZzo/duckdb/extensions/v1.5.4/linux_amd64/spatial.duckdb_extension(+0x7718d9) [0x7f2a382a68d9] 8 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb15ExtensionHelper29LoadExternalExtensionInternalERNS_16DatabaseInstanceERNS_10FileSystemERKNSt3__112basic_stringIcNS5_11char_traitsIcEENS5_9allocatorIcEEEERNS_19ExtensionActiveLoadE+0x18f) [0x7f2b5927f85f] 9 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb15ExtensionHelper21LoadExternalExtensionERNS_16DatabaseInstanceERNS_10FileSystemERKNSt3__112basic_stringIcNS5_11char_traitsIcEENS5_9allocatorIcEEEE+0x4a) [0x7f2b5927f60a] 10 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZNK6duckdb12PhysicalLoad15GetDataInternalERNS_16ExecutionContextERNS_9DataChunkERNS_19OperatorSourceInputE+0x151) [0x7f2b5a06d401] 11 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb16PipelineExecutor15FetchFromSourceERNS_9DataChunkE+0x98) [0x7f2b5a8a10c8] 12 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb16PipelineExecutor7ExecuteEm+0x146) [0x7f2b5a89dca6] 13 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb12PipelineTask11ExecuteTaskENS_17TaskExecutionModeE+0x154) [0x7f2b5a89d914] 14 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb12ExecutorTask7ExecuteENS_17TaskExecutionModeE+0xa0) [0x7f2b5a897570] 15 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb13TaskScheduler14ExecuteForeverEPNSt3__16atomicIbEE+0x39a) [0x7f2b5a8a432a] 16 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(+0x1aafe9c) [0x7f2b5a8afe9c] 17 /lib64/libc.so.6(+0x71f14) [0x7f2b6da80f14] 18 /lib64/libc.so.6(+0xf532c) [0x7f2b6db0432c] ================================= *** caught segfault *** address 0x4d20019aed5, cause 'unknown' Traceback: 1: rapi_execute(stmt, convert_opts) 2: withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}) 3: doTryCatch(return(expr), name, parentenv, handler) 4: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5: tryCatchList(expr, classes, parentenv, handlers) 6: tryCatch(withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}), stackOverflowError = handlers[[1L]]) 7: rlang::try_fetch(rapi_execute(stmt, convert_opts), error = function(e) { rethrow_error_from_rapi(e, call)}) 8: rethrow_rapi_execute(res@stmt_lst$ref, duckdb_convert_opts_impl(res@connection@convert_opts, arrow = res@arrow)) 9: duckdb_execute(res) 10: duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow) 11: .local(conn, statement, ...) 12: dbSendQuery(conn, statement, ...) 13: dbSendQuery(conn, statement, ...) 14: dbSendStatement(conn, statement, ...) 15: dbSendStatement(conn, statement, ...) 16: DBI::dbExecute(conn, glue::glue("LOAD {extension};")) 17: DBI::dbExecute(conn, glue::glue("LOAD {extension};")) 18: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage")) 19: suppressMessages(DBI::dbExecute(conn, glue::glue("LOAD {extension};"))) 20: doTryCatch(return(expr), name, parentenv, handler) 21: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 22: tryCatchList(expr, classes, parentenv, handlers) 23: tryCatch({ suppressMessages(DBI::dbExecute(conn, glue::glue("LOAD {extension};")))}, error = function(e) { cli::cli_abort(c("Failed to load the {extension} extension.", x = conditionMessage(e), i = "The binary may be corrupt or incompatible with this platform/DuckDB version.", i = "Try reinstalling with {.code ddbs_install(extension = '{extension}', upgrade = TRUE)}"))}) 24: ddbs_load(conn, quiet = TRUE) 25: duckspatial::ddbs_create_conn(dbdir = "memory", bigint = "integer64", ...) 26: ddbh3_default_conn() 27: eval(exprs, env) 28: eval(exprs, env) 29: withCallingHandlers(invisible(eval(exprs, env)), error = function(err) { cli::cli_abort("Failed to evaluate {.path {path}}.", parent = err, call = error_call)}) 30: source_file(path, env = env, chdir = chdir, wrap = wrap, shuffle = shuffle, error_call = error_call) 31: FUN(X[[i]], ...) 32: lapply(files, function(path) { source_file(path, env = env, chdir = chdir, wrap = wrap, shuffle = shuffle, error_call = error_call)}) 33: source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE) 34: source_test_setup(".", env) 35: test_files_setup_state(test_dir, test_package, load_helpers, env) 36: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, shuffle = shuffle, error_call = error_call) 37: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel, shuffle = shuffle) 38: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed") 39: test_check("duckh3") An irrecoverable exception occurred. R is aborting now ... Flavor: r-devel-linux-x86_64-fedora-clang