CRAN Package Check Results for Package demulticoder

Last updated on 2025-10-30 19:53:22 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.2	2.74	66.29	69.03	OK
r-devel-linux-x86_64-debian-gcc	0.1.2	2.24	50.35	52.59	OK
r-devel-linux-x86_64-fedora-clang	0.1.2	21.00	91.12	112.12	OK
r-devel-linux-x86_64-fedora-gcc	0.1.2	11.00	95.96	106.96	OK
r-devel-windows-x86_64	0.1.2	6.00	87.00	93.00	OK
r-patched-linux-x86_64	0.1.2	3.24	38.55	41.79	ERROR
r-release-linux-x86_64	0.1.2	3.26	61.82	65.08	OK
r-release-macos-arm64	0.1.2	2.00	33.00	35.00	OK
r-release-macos-x86_64	0.1.2	3.00	63.00	66.00	OK
r-release-windows-x86_64	0.1.2	7.00	87.00	94.00	OK
r-oldrel-macos-arm64	0.1.2	2.00	37.00	39.00	OK
r-oldrel-macos-x86_64	0.1.2	3.00	69.00	72.00	OK
r-oldrel-windows-x86_64	0.1.2	8.00	153.00	161.00	OK

Check Details

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [6s/9s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(demulticoder) > > test_check("demulticoder") cutadapt is not installed, skipping tests. cutadapt is not installed, skipping tests. cutadapt is not installed, skipping tests. cutadapt is not installed, skipping tests. Existing files found in the output directory. Overwriting existing files. Rows: 2 Columns: 25 -- Column specification -------------------------------------------------------- Delimiter: "," chr (3): primer_name, forward, reverse dbl (18): minCutadaptlength, maxN, maxEE_forward, maxEE_reverse, truncLen_fo... lgl (4): already_trimmed, count_all_samples, multithread, verbose i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. Rows: 2 Columns: 25 -- Column specification -------------------------------------------------------- Delimiter: "," chr (3): primer_name, forward, reverse dbl (18): minCutadaptlength, maxN, maxEE_forward, maxEE_reverse, truncLen_fo... lgl (4): already_trimmed, count_all_samples, multithread, verbose i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. Rows: 4 Columns: 3 -- Column specification -------------------------------------------------------- Delimiter: "," chr (3): sample_name, primer_name, organism i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_prepare_reads.R:2:3'): prepare_reads works correctly ─────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called 'dada2' Backtrace: ▆ 1. ├─demulticoder::prepare_reads(...) at test_prepare_reads.R:2:3 2. │ └─demulticoder:::read_prefilt_fastq(...) 3. │ └─demulticoder:::remove_ns(...) 4. └─base::loadNamespace(x) 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 6. └─base (local) withOneRestart(expr, restarts[[1L]]) 7. └─base (local) doWithOneRestart(return(expr), restart) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64