Last updated on 2024-08-16 21:49:26 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| hydroloom | 13 | ||
| ncdfgeom | 13 | ||
| nhdplusTools | 3 | 6 | 4 |
| sbtools | 13 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 3, NOTE: 6, OK: 4
Version: 1.2.1
Check: installed package size
Result: NOTE
installed size is 6.4Mb
sub-directories of 1Mb or more:
data 1.5Mb
doc 4.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘nhdplusTools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_plus_network_attributes
> ### Title: Add NHDPlus Network Attributes to a provided network.
> ### Aliases: add_plus_network_attributes
>
> ### ** Examples
>
>
> source(system.file("extdata", "walker_data.R", package = "nhdplusTools"))
Request failed [503]. Retrying in 1 seconds...
Request failed [503]. Retrying in 1.5 seconds...
Error: Cannot open "/home/hornik/tmp/scratch/RtmpOfD4BW/nhdplusTools/walker.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/52s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat")
>
> test_check("nhdplusTools")
Loading required package: nhdplusTools
Starting 2 test processes
[ FAIL 21 | WARN 0 | SKIP 49 | PASS 63 ]
══ Skipped tests (49) ══════════════════════════════════════════════════════════
• On CRAN (49): 'test_00_plot_integration_nhdplus.R:6:3',
'test_00_plot_bbox_nhdplus.R:5:3', 'test_00_plot_local_extra_nhdplus.R:9:3',
'test_00_plot_local_nhdplus.R:9:3', 'test_01_get_nldi.R:5:3',
'test_01_get_nldi.R:25:3', 'test_01_get_nldi.R:85:3',
'test_01_get_nldi.R:113:3', 'test_01_get_nldi.R:130:3',
'test_01_get_nldi.R:167:3', 'test_01_get_nldi.R:203:3',
'test_01_get_nldi.R:246:3', 'test_00_plot_nhdplus.R:5:3',
'test_00_plot_nhdplus.R:88:3', 'test_00_plot_nhdplus.R:130:3',
'test_00_plot_nhdplus.R:159:3', 'test_00_plot_nhdplus.R:195:3',
'test_02_subset.R:135:3', 'test_02_subset.R:191:3',
'test_03_get_functions.R:21:3', 'test_03_get_functions.R:48:3',
'test_03_get_functions.R:71:3', 'test_03_get_functions.R:122:3',
'test_03_get_functions.R:193:3', 'test_03_get_functions.R:209:3',
'test_03_get_functions.R:222:3', 'test_03_get_functions.R:240:3',
'test_03_get_functions.R:247:3', 'test_02_subset_extras.R:93:3',
'test_02_subset_extras.R:147:3', 'test_arcrest.R:58:3',
'test_geoconnex.R:3:3', 'test_geoconnex.R:14:3', 'test_get_3dhp.R:3:3',
'test_get_nhdplushr.R:8:3', 'test_get_nhdplushr.R:19:3',
'test_get_nhdplushr.R:45:3', 'test_get_nhdplushr.R:62:3',
'test_get_nhdplushr.R:104:3', 'test_get_nhdplushr.R:128:3',
'test_get_nhdplushr.R:146:3', 'test_get_vaa.R:4:3', 'test_get_vaa.R:38:3',
'test_get_path.R:69:3', 'test_navigate.R:4:3', 'test_navigate.R:71:3',
'test_map_nhdplus.R:4:3', 'test_rescale_catchments.R:3:3',
'test_run_plus_attributes.R:20:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_02_subset.R:35:3'): subset runs as expected ────────────────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/RtmpyD4ipi/nhdplusTools/sample_natseamless.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. └─sf::read_sf(sample_data, "NHDFlowline_Network") at test_02_subset.R:35:3
2. ├─sf::st_read(...)
3. └─sf:::st_read.character(...)
4. └─sf:::CPL_read_ogr(...)
── Error ('test_02_subset_extras.R:12:3'): subset by bounding box ──────────────
<Rcpp::exception/C++Error/error/condition>
Error: Open failed.
Backtrace:
▆
1. └─nhdplusTools::subset_nhdplus(...) at test_02_subset_extras.R:12:3
2. └─nhdplusTools:::get_catchment_layer_name(simplified, nhdplus_data)
3. ├─layer_name %in% sf::st_layers(nhdplus_data)$name
4. └─sf::st_layers(nhdplus_data)
5. └─sf:::CPL_get_layers(dsn, options, do_count)
── Error ('test_02_subset_extras.R:70:3'): by rpu ──────────────────────────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/Rtmpfu1w9O/nhdplusTools/sample_natseamless.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. └─sf::read_sf(nhdplus_path(), "NHDFlowline_Network") at test_02_subset_extras.R:70:3
2. ├─sf::st_read(...)
3. └─sf:::st_read.character(...)
4. └─sf:::CPL_read_ogr(...)
── Error ('test_align_nhdplus_names.R:1:1'): (code run outside of `test_that()`) ──
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/RtmpyD4ipi/nhdplusTools/new_hope.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata/new_hope_data.R", package = "nhdplusTools")) at test_align_nhdplus_names.R:1:1
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, f), "CatchmentSP")
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_get_codes.R:1:1'): (code run outside of `test_that()`) ─────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/RtmpyD4ipi/nhdplusTools/walker.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata", "walker_data.R", package = "nhdplusTools")) at test_get_codes.R:1:1
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, f), "CatchmentSP")
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_calc_network.R:19:3'): total drainage area works ───────────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/Rtmpfu1w9O/nhdplusTools/walker.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata", "walker_data.R", package = "nhdplusTools")) at test_calc_network.R:19:3
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, f), "CatchmentSP")
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_calc_network.R:42:3'): arbolate sum works ──────────────────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/Rtmpfu1w9O/nhdplusTools/walker.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata", "walker_data.R", package = "nhdplusTools")) at test_calc_network.R:42:3
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, f), "CatchmentSP")
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_calc_network.R:60:3'): get_terminal ────────────────────────────
Error in `zip::unzip(d, exdir = work_dir)`: zip error: Cannot open zip file `/home/hornik/tmp/scratch/Rtmpfu1w9O/nhdplusTools/03_sub.zip` for reading in file zip.c:141
Backtrace:
▆
1. ├─base::suppressMessages(...) at test_calc_network.R:60:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::source(system.file("extdata/nhdplushr_data.R", package = "nhdplusTools"))
4. │ ├─base::withVisible(eval(ei, envir))
5. │ └─base::eval(ei, envir)
6. │ └─base::eval(ei, envir)
7. └─global download_pkg_data(...)
8. └─zip::unzip(d, exdir = work_dir)
── Error ('test_calc_network.R:91:3'): get_terminal ────────────────────────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/Rtmpfu1w9O/nhdplusTools/walker.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata", "walker_data.R", package = "nhdplusTools")) at test_calc_network.R:91:3
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, f), "CatchmentSP")
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_get_geometry.R:4:3'): get_node ─────────────────────────────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/RtmpyD4ipi/nhdplusTools/sample_natseamless.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. └─sf::read_sf(sample_data, "NHDFlowline_Network") at test_get_geometry.R:4:3
2. ├─sf::st_read(...)
3. └─sf:::st_read.character(...)
4. └─sf:::CPL_read_ogr(...)
── Error ('test_get_geometry.R:28:3'): fix_flowdir ─────────────────────────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/RtmpyD4ipi/nhdplusTools/sample_natseamless.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. └─sf::read_sf(sample_data, "NHDFlowline_Network") at test_get_geometry.R:28:3
2. ├─sf::st_read(...)
3. └─sf:::st_read.character(...)
4. └─sf:::CPL_read_ogr(...)
── Error ('test_get_network.R:3:1'): (code run outside of `test_that()`) ───────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/Rtmpfu1w9O/nhdplusTools/petapsco_flowlines.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata", "sample_flines.R", package = "nhdplusTools")) at test_get_network.R:3:1
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, "petapsco_flowlines.gpkg"))
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_get_nhdplus.R:3:1'): (code run outside of `test_that()`) ───────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/RtmpyD4ipi/nhdplusTools/petapsco_flowlines.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata", "sample_flines.R", package = "nhdplusTools")) at test_get_nhdplus.R:3:1
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, "petapsco_flowlines.gpkg"))
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_get_path_lengths.R:3:3'): path_lengths ─────────────────────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/RtmpyD4ipi/nhdplusTools/walker.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata", "walker_data.R", package = "nhdplusTools")) at test_get_path_lengths.R:3:3
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, f), "CatchmentSP")
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_get_path_lengths.R:52:3'): get_partial_length ──────────────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/RtmpyD4ipi/nhdplusTools/walker.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata", "walker_data.R", package = "nhdplusTools")) at test_get_path_lengths.R:52:3
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, f), "CatchmentSP")
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_index.R:3:1'): (code run outside of `test_that()`) ─────────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/RtmpyD4ipi/nhdplusTools/petapsco_flowlines.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata", "sample_flines.R", package = "nhdplusTools")) at test_index.R:3:1
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, "petapsco_flowlines.gpkg"))
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_get_path.R:23:3'): calculate level path ────────────────────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/Rtmpfu1w9O/nhdplusTools/walker.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata", "walker_data.R", package = "nhdplusTools")) at test_get_path.R:23:3
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, f), "CatchmentSP")
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_get_path.R:115:3'): from vignette works ────────────────────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/Rtmpfu1w9O/nhdplusTools/new_hope.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata/new_hope_data.R", package = "nhdplusTools")) at test_get_path.R:115:3
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, f), "CatchmentSP")
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_nhdplusTools.R:3:1'): (code run outside of `test_that()`) ──────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/Rtmpfu1w9O/nhdplusTools/petapsco_flowlines.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata", "sample_flines.R", package = "nhdplusTools")) at test_nhdplusTools.R:3:1
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, "petapsco_flowlines.gpkg"))
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_rebuild_topology.R:1:1'): (code run outside of `test_that()`) ──
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/RtmpyD4ipi/nhdplusTools/petapsco_flowlines.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. ├─base::source(system.file("extdata", "sample_flines.R", package = "nhdplusTools")) at test_rebuild_topology.R:1:1
2. │ ├─base::withVisible(eval(ei, envir))
3. │ └─base::eval(ei, envir)
4. │ └─base::eval(ei, envir)
5. └─sf::read_sf(file.path(data_dir, "petapsco_flowlines.gpkg"))
6. ├─sf::st_read(...)
7. └─sf:::st_read.character(...)
8. └─sf:::CPL_read_ogr(...)
── Error ('test_wb_index.R:4:1'): index to waterbodies ─────────────────────────
<Rcpp::exception/C++Error/error/condition>
Error: Cannot open "/home/hornik/tmp/scratch/Rtmpfu1w9O/nhdplusTools/sample_natseamless.gpkg"; The source could be corrupt or not supported. See `st_drivers()` for a list of supported formats.
Backtrace:
▆
1. └─sf::read_sf(sample_data, "NHDWaterbody") at test_wb_index.R:4:1
2. ├─sf::st_read(...)
3. └─sf:::st_read.character(...)
4. └─sf:::CPL_read_ogr(...)
[ FAIL 21 | WARN 0 | SKIP 49 | PASS 63 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.2.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘get_3dhp_data.Rmd’
...
> par(old_par)
> if (Sys.getenv("BUILD_VIGNETTES") != "TRUE") {
+ unlink(work_dir, recursive = TRUE)
+ }
When sourcing ‘get_3dhp_data.R’:
Error: object 'work_dir' not found
Execution halted
when running code in ‘get_data_overview.Rmd’
...
+ utils::unzip(f, exdir = wbd_dir)
+ }
> wbd_gdb <- list.files(wbd_dir, pattern = ".gdb", full.names = TRUE)
> sf::st_layers(wbd_gdb)
When sourcing ‘get_data_overview.R’:
Error: argument datasource should have length 1.
Execution halted
when running code in ‘nhdplushr.Rmd’
...
> hr_gpkg <- file.path(work_dir, "hr_data.gpkg")
> plot_data <- plot_nhdplus(list("nwissite", "USGS-05428500"),
+ streamorder = 3, nhdplus_data = sample_data)
Zoom set to: 11
When sourcing ‘nhdplushr.R’:
Error: plot.new has not been called yet
Execution halted
‘get_3dhp_data.Rmd’ using ‘UTF-8’... failed
‘get_data_overview.Rmd’ using ‘UTF-8’... failed
‘indexing.Rmd’ using ‘UTF-8’... [3s/4s] OK
‘nhdplusTools.Rmd’ using ‘UTF-8’... [81s/120s] OK
‘nhdplushr.Rmd’ using ‘UTF-8’... failed
‘plot_nhdplus.Rmd’ using ‘UTF-8’... [8s/40s] OK
Flavor: r-oldrel-macos-arm64
Version: 1.2.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘get_3dhp_data.Rmd’
...
> par(old_par)
> if (Sys.getenv("BUILD_VIGNETTES") != "TRUE") {
+ unlink(work_dir, recursive = TRUE)
+ }
When sourcing ‘get_3dhp_data.R’:
Error: object 'work_dir' not found
Execution halted
when running code in ‘get_data_overview.Rmd’
...
+ utils::unzip(f, exdir = wbd_dir)
+ }
> wbd_gdb <- list.files(wbd_dir, pattern = ".gdb", full.names = TRUE)
> sf::st_layers(wbd_gdb)
When sourcing ‘get_data_overview.R’:
Error: argument datasource should have length 1.
Execution halted
‘get_3dhp_data.Rmd’ using ‘UTF-8’... failed
‘get_data_overview.Rmd’ using ‘UTF-8’... failed
‘indexing.Rmd’ using ‘UTF-8’... [5s/10s] OK
‘nhdplusTools.Rmd’ using ‘UTF-8’... [18s/32s] OK
‘nhdplushr.Rmd’ using ‘UTF-8’... [121s/209s] OK
‘plot_nhdplus.Rmd’ using ‘UTF-8’... [13s/44s] OK
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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