CRAN Package Check Results for Maintainer ‘Davis Weaver <davis.weaver at case.edu>’

Last updated on 2025-04-12 20:52:12 CEST.

Package	ERROR	NOTE	OK
crosstalkr	2	5	7

Package crosstalkr

Current CRAN status: ERROR: 2, NOTE: 5, OK: 7

Version: 1.0.5
Check: tests
Result: ERROR Running ‘testthat.R’ [47s/69s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(crosstalkr) > > test_check("crosstalkr") [ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ] ══ Skipped tests (12) ══════════════════════════════════════════════════════════ • On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3', 'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3', 'test-utils.R:17:3' • relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3' • relies on system file (2): 'test-calc_np.R:1:1', 'test-node_suppression.R:1:1' • skipping due to long download times (2): 'test-ppi_ingest.R:3:3', 'test-ppi_ingest.R:9:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ── Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x55ff9e3674d0>), "rb")`: cannot open the connection Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa") 5. │ └─crosstalkr::supported_species() 6. │ └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt") 7. │ └─vroom::vroom(...) 8. │ └─vroom:::vroom_(...) 9. ├─base (local) `<fn>`(`<curl>`, "rb") 10. └─base::open.connection(`<curl>`, "rb") [ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.5
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘EnsDb.Hsapiens.v86’ Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.5
Check: tests
Result: ERROR Running 'testthat.R' [61s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(crosstalkr) > > test_check("crosstalkr") [ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ] ══ Skipped tests (12) ══════════════════════════════════════════════════════════ • On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3', 'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3', 'test-utils.R:17:3' • relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3' • relies on system file (2): 'test-calc_np.R:1:1', 'test-node_suppression.R:1:1' • skipping due to long download times (2): 'test-ppi_ingest.R:3:3', 'test-ppi_ingest.R:9:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ── Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x0000015fd98fc5a0>), "rb")`: cannot open the connection Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa") 5. │ └─crosstalkr::supported_species() 6. │ └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt") 7. │ └─vroom::vroom(...) 8. │ └─vroom:::vroom_(...) 9. ├─base (local) `<fn>`(`<curl>`, "rb") 10. └─base::open.connection(`<curl>`, "rb") [ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ] Error: Test failures Execution halted Flavor: r-release-windows-x86_64