CRAN Package Check Results for Maintainer ‘Barnabas H. Daru <darunabas at gmail.com>’

Last updated on 2025-12-04 09:50:20 CET.

Package	ERROR	OK
phyloregion	1	12

Package phyloregion

Current CRAN status: ERROR: 1, OK: 12

Version: 1.0.9
Check: examples
Result: ERROR Running examples in 'phyloregion-Ex.R' failed The error most likely occurred in: > ### Name: rast2comm > ### Title: Convert raw input distribution data to community > ### Aliases: rast2comm polys2comm points2comm > > ### ** Examples > > > > library(terra) terra 1.8.86 > s <- vect(system.file("ex/nigeria.json", package="phyloregion")) > set.seed(1) > m <- as.data.frame(spatSample(s, 1000, method = "random"), + geom = "XY")[-1] > names(m) <- c("lon", "lat") > species <- paste0("sp", sample(1:100)) > m$taxon <- sample(species, size = nrow(m), replace = TRUE) > > pt <- points2comm(dat = m, res = 0.5) # This generates a list of two objects Warning: PROJ: proj_create_from_database: Cannot find proj.db (GDAL error 1) Warning: [crs<-] Cannot set raster SRS: empty srs Error: [project] output crs is not valid Execution halted Flavor: r-oldrel-windows-x86_64

Version: 1.0.9
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Benchmark.Rmd' using rmarkdown --- finished re-building 'Benchmark.Rmd' --- re-building 'ed.Rmd' using rmarkdown --- finished re-building 'ed.Rmd' --- re-building 'phyloregion-intro.Rmd' using rmarkdown Quitting from phyloregion-intro.Rmd:74-87 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! [project] output crs is not valid --- Backtrace: ▆ 1. └─phyloregion::points2comm(...) 2. ├─base::suppressWarnings(invisible(project(m, "epsg:4326"))) 3. │ └─base::withCallingHandlers(...) 4. ├─terra::project(m, "epsg:4326") 5. └─terra::project(m, "epsg:4326") 6. └─terra (local) .local(x, ...) 7. └─terra:::messages(x, "project") 8. └─terra:::error(f, x@pntr$getError()) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'phyloregion-intro.Rmd' failed with diagnostics: [project] output crs is not valid --- failed re-building 'phyloregion-intro.Rmd' SUMMARY: processing the following file failed: 'phyloregion-intro.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64