CRAN Package Check Results for Package casebase

Last updated on 2026-08-10 10:50:26 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.10.6	12.68	290.17	302.85	ERROR
r-devel-linux-x86_64-debian-gcc	0.10.6	9.09	214.56	223.65	ERROR
r-devel-linux-x86_64-fedora-clang	0.10.6	10.00	197.63	207.63	ERROR
r-devel-linux-x86_64-fedora-gcc	0.10.6			216.48	ERROR
r-devel-windows-x86_64	0.10.6	16.00	260.00	276.00	ERROR
r-patched-linux-x86_64	0.10.6	12.38	268.95	281.33	ERROR
r-release-linux-x86_64	0.10.6	12.47	274.36	286.83	ERROR
r-release-macos-arm64	0.10.6	3.00	80.00	83.00	OK
r-release-macos-x86_64	0.10.6	10.00	357.00	367.00	OK
r-release-windows-x86_64	0.10.6	15.00	260.00	275.00	ERROR
r-oldrel-macos-arm64	0.10.6				OK
r-oldrel-macos-x86_64	0.10.6	8.00	304.00	312.00	OK
r-oldrel-windows-x86_64	0.10.6	21.00	352.00	373.00	ERROR

Additional issues

M1mac

Check Details

Version: 0.10.6
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘competingRisk.Rmd’ using rmarkdown --- finished re-building ‘competingRisk.Rmd’ --- re-building ‘customizingpopTime.Rmd’ using rmarkdown --- finished re-building ‘customizingpopTime.Rmd’ --- re-building ‘plotabsRisk.Rmd’ using rmarkdown --- finished re-building ‘plotabsRisk.Rmd’ --- re-building ‘plotsmoothHazard.Rmd’ using rmarkdown Quitting from plotsmoothHazard.Rmd:68-81 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_dots_nonempty> Error in `plot()`: ! `...` must be empty. ✖ Problematic arguments: • print.cond = TRUE • main = "No Hormonal Therapy Hazard Function" --- Backtrace: ▆ 1. ├─base::plot(...) 2. └─casebase:::plot.singleEventCB(...) 3. ├─base::do.call(...) 4. └─visreg (local) `<fn>`(...) 5. └─visreg:::finalize_visreg(v, plot, ...) 6. ├─base::plot(v, ...) 7. └─visreg:::plot.visreg(v, ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'plotsmoothHazard.Rmd' failed with diagnostics: `...` must be empty. ✖ Problematic arguments: • print.cond = TRUE • main = "No Hormonal Therapy Hazard Function" --- failed re-building ‘plotsmoothHazard.Rmd’ --- re-building ‘popTime.Rmd’ using rmarkdown --- finished re-building ‘popTime.Rmd’ --- re-building ‘smoothHazard.Rmd’ using rmarkdown Quitting from smoothHazard.Rmd:121-125 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_dots_nonempty> Error in `FUN()`: ! `...` must be empty. ✖ Problematic argument: • print.cond = TRUE --- Backtrace: ▆ 1. ├─base::plot(model4, hazard.params = list(alpha = 0.05)) 2. └─casebase:::plot.singleEventCB(model4, hazard.params = list(alpha = 0.05)) 3. ├─base::do.call(...) 4. └─visreg (local) `<fn>`(...) 5. └─visreg:::finalize_visreg(v, plot, ...) 6. ├─base::plot(v, ...) 7. └─visreg:::plot.visreg_list(v, ...) 8. ├─base::structure(...) 9. └─base::lapply(x, plot, ...) 10. ├─base (local) FUN(X[[i]], ...) 11. └─visreg:::plot.visreg(X[[i]], ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'smoothHazard.Rmd' failed with diagnostics: `...` must be empty. ✖ Problematic argument: • print.cond = TRUE --- failed re-building ‘smoothHazard.Rmd’ --- re-building ‘time-varying-covariates.Rmd’ using rmarkdown --- finished re-building ‘time-varying-covariates.Rmd’ SUMMARY: processing the following files failed: ‘plotsmoothHazard.Rmd’ ‘smoothHazard.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.10.6
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘competingRisk.Rmd’ using rmarkdown --- finished re-building ‘competingRisk.Rmd’ --- re-building ‘customizingpopTime.Rmd’ using rmarkdown --- finished re-building ‘customizingpopTime.Rmd’ --- re-building ‘plotabsRisk.Rmd’ using rmarkdown --- finished re-building ‘plotabsRisk.Rmd’ --- re-building ‘plotsmoothHazard.Rmd’ using rmarkdown Quitting from plotsmoothHazard.Rmd:68-81 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_dots_nonempty> Error in `plot()`: ! `...` must be empty. ✖ Problematic arguments: • print.cond = TRUE • main = "No Hormonal Therapy Hazard Function" --- Backtrace: ▆ 1. ├─base::plot(...) 2. └─casebase:::plot.singleEventCB(...) 3. ├─base::do.call(...) 4. └─visreg (local) `<fn>`(...) 5. └─visreg:::finalize_visreg(v, plot, ...) 6. ├─base::plot(v, ...) 7. └─visreg:::plot.visreg(v, ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'plotsmoothHazard.Rmd' failed with diagnostics: `...` must be empty. ✖ Problematic arguments: • print.cond = TRUE • main = "No Hormonal Therapy Hazard Function" --- failed re-building ‘plotsmoothHazard.Rmd’ --- re-building ‘popTime.Rmd’ using rmarkdown --- finished re-building ‘popTime.Rmd’ --- re-building ‘smoothHazard.Rmd’ using rmarkdown Quitting from smoothHazard.Rmd:121-125 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_dots_nonempty> Error in `FUN()`: ! `...` must be empty. ✖ Problematic argument: • print.cond = TRUE --- Backtrace: ▆ 1. ├─base::plot(model4, hazard.params = list(alpha = 0.05)) 2. └─casebase:::plot.singleEventCB(model4, hazard.params = list(alpha = 0.05)) 3. ├─base::do.call(...) 4. └─visreg (local) `<fn>`(...) 5. └─visreg:::finalize_visreg(v, plot, ...) 6. ├─base::plot(v, ...) 7. └─visreg:::plot.visreg_list(v, ...) 8. ├─base::structure(...) 9. └─base::lapply(x, plot, ...) 10. ├─base (local) FUN(X[[i]], ...) 11. └─visreg:::plot.visreg(X[[i]], ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'smoothHazard.Rmd' failed with diagnostics: `...` must be empty. ✖ Problematic argument: • print.cond = TRUE --- failed re-building ‘smoothHazard.Rmd’ --- re-building ‘time-varying-covariates.Rmd’ using rmarkdown --- finished re-building ‘time-varying-covariates.Rmd’ SUMMARY: processing the following files failed: ‘plotsmoothHazard.Rmd’ ‘smoothHazard.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 0.10.6
Check: tests
Result: ERROR Running ‘testthat.R’ [38s/40s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(casebase) See example usage at http://sahirbhatnagar.com/casebase/ > library(data.table) Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > library(survival) > > test_check("casebase") Saving _problems/test-plotSingleEventCB-39.R [ FAIL 1 | WARN 16 | SKIP 1 | PASS 255 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • GBM is not implemented (1): 'test-gbm.R:4:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-plotSingleEventCB.R:39:5'): no error in plot method for singleEventCB objects - hazard function ── Expected `inherits(outglm, "try-error")` to be FALSE. Differences: `actual`: TRUE `expected`: FALSE [ FAIL 1 | WARN 16 | SKIP 1 | PASS 255 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc