CRAN Package Check Results for Package cards

Last updated on 2026-05-04 11:50:00 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.7.1	9.16	361.54	370.70	OK
r-devel-linux-x86_64-debian-gcc	0.7.1	5.85	232.79	238.64	OK
r-devel-linux-x86_64-fedora-clang	0.7.1	17.00	544.29	561.29	ERROR
r-devel-linux-x86_64-fedora-gcc	0.7.1	14.00	541.81	555.81	OK
r-devel-windows-x86_64	0.7.1	11.00	199.00	210.00	ERROR
r-patched-linux-x86_64	0.7.1	8.64	335.03	343.67	OK
r-release-linux-x86_64	0.7.1	8.62	338.63	347.25	OK
r-release-macos-arm64	0.7.1	2.00	46.00	48.00	OK
r-release-macos-x86_64	0.7.1	6.00	277.00	283.00	OK
r-release-windows-x86_64	0.7.1	12.00	249.00	261.00	OK
r-oldrel-macos-arm64	0.7.1	2.00	47.00	49.00	OK
r-oldrel-macos-x86_64	0.7.1	6.00	283.00	289.00	OK
r-oldrel-windows-x86_64	0.7.1	19.00	310.00	329.00	OK

Check Details

Version: 0.7.1
Check: examples
Result: ERROR Running examples in ‘cards-Ex.R’ failed The error most likely occurred in: > ### Name: ard_hierarchical > ### Title: Hierarchical ARD Statistics > ### Aliases: ard_hierarchical ard_hierarchical_count > ### ard_hierarchical.data.frame ard_hierarchical_count.data.frame > > ### ** Examples > > ard_hierarchical( + data = ADAE |> + dplyr::slice_tail(n = 1L, by = c(USUBJID, TRTA, AESOC, AEDECOD)), + variables = c(AESOC, AEDECOD), + by = TRTA, + id = USUBJID, + denominator = ADSL + ) Error in as.data.frame.integer(x[[i]], optional = TRUE) : row names contain missing values Calls: ard_hierarchical ... data.frame -> as.data.frame -> as.data.frame.integer Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64

Version: 0.7.1
Check: tests
Result: ERROR Running ‘testthat.R’ [7m/17m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(cards) > > test_check("cards") Starting 2 test processes. Saving _problems/test-ard_hierarchical-45.R Saving _problems/test-ard_hierarchical-67.R Saving _problems/test-ard_hierarchical-278.R Saving _problems/test-ard_stack_hierarchical-73.R Saving _problems/test-ard_stack_hierarchical-111.R Saving _problems/test-ard_stack_hierarchical-182.R Saving _problems/test-ard_stack_hierarchical-249.R Saving _problems/test-ard_stack_hierarchical-263.R Saving _problems/test-ard_stack_hierarchical-734.R Saving _problems/test-ard_tabulate-151.R Saving _problems/test-ard_tabulate-162.R Saving _problems/test-ard_tabulate-471.R Saving _problems/test-ard_tabulate-640.R Saving _problems/test-ard_tabulate-769.R Saving _problems/test-ard_tabulate-1315.R > test-bind_ard.R: i 27 rows with duplicated statistic values have been removed. > test-bind_ard.R: * See cards::bind_ard(.distinct) (`?cards::bind_ard()`) for detail > test-bind_ard.R: s. Saving _problems/test-shuffle_ard-366.R Saving _problems/test-shuffle_ard-375.R Saving _problems/test-shuffle_ard-633.R [ FAIL 18 | WARN 0 | SKIP 109 | PASS 293 ] ══ Skipped tests (109) ═════════════════════════════════════════════════════════ • On CRAN (106): 'test-apply_fmt_fun.R:86:1', 'test-apply_fmt_fun.R:122:1', 'test-add_calculated_row.R:1:1', 'test-add_calculated_row.R:24:1', 'test-add_calculated_row.R:32:1', 'test-ard_formals.R:1:1', 'test-ard_attributes.R:3:1', 'test-ard_attributes.R:28:1', 'test-ard_identity.R:28:1', 'test-ard_missing.R:1:1', 'test-ard_missing.R:29:1', 'test-ard_mvsummary.R:85:1', 'test-ard_mvsummary.R:128:1', 'test-ard_pairwise.R:52:1', 'test-ard_pairwise.R:89:1', 'test-ard_pairwise.R:96:1', 'test-ard_hierarchical.R:2:1', 'test-ard_hierarchical.R:107:1', 'test-ard_hierarchical.R:117:1', 'test-ard_hierarchical.R:143:1', 'test-ard_hierarchical.R:253:1', 'test-ard_hierarchical.R:305:1', 'test-ard_hierarchical.R:328:1', 'test-ard_stack_hierarchical.R:76:1', 'test-ard_stack_hierarchical.R:335:1', 'test-ard_stack_hierarchical.R:349:1', 'test-ard_stack_hierarchical.R:497:1', 'test-ard_stack_hierarchical.R:575:1', 'test-ard_stack_hierarchical.R:586:1', 'test-ard_stack_hierarchical.R:599:1', 'test-ard_stack_hierarchical.R:667:1', 'test-ard_stack.R:221:1', 'test-ard_stack.R:239:1', 'test-ard_stack.R:267:1', 'test-ard_strata.R:1:1', 'test-ard_tabulate.R:1:1', 'test-ard_tabulate.R:67:1', 'test-ard_tabulate.R:101:1', 'test-ard_tabulate.R:245:1', 'test-ard_tabulate.R:563:1', 'test-ard_tabulate.R:699:1', 'test-ard_tabulate.R:772:1', 'test-ard_tabulate.R:1081:1', 'test-ard_tabulate.R:1130:1', 'test-ard_tabulate.R:1371:1', 'test-ard_tabulate_value.R:49:1', 'test-ard_tabulate_value.R:102:1', 'test-ard_total_n.R:1:1', 'test-as_card.R:1:1', 'test-as_card.R:21:1', 'test-as_nested_list.R:1:1', 'test-bind_ard.R:11:1', 'test-bind_ard.R:25:1', 'test-bind_ard.R:58:1', 'test-check_ard_structure.R:1:1', 'test-eval_capture_conditions.R:1:1', 'test-eval_capture_conditions.R:37:1', 'test-eval_capture_conditions.R:63:1', 'test-filter_ard_hierarchical.R:1:1', 'test-get_ard_statistics.R:1:1', 'test-mock.R:1:1', 'test-mock.R:12:1', 'test-mock.R:24:1', 'test-mock.R:34:1', 'test-mock.R:45:1', 'test-mock.R:56:1', 'test-mock.R:67:1', 'test-mock.R:77:1', 'test-mock.R:88:1', 'test-mock.R:97:1', 'test-mock.R:105:1', 'test-options.R:29:1', 'test-print.R:1:1', 'test-print_ard_conditions.R:1:1', 'test-print_ard_conditions.R:69:1', 'test-print_ard_conditions.R:99:1', 'test-print_ard_conditions.R:110:1', 'test-print_ard_conditions.R:137:1', 'test-process_selectors.R:51:1', 'test-process_selectors.R:63:1', 'test-rename_ard_columns.R:32:1', 'test-rename_ard_groups.R:1:1', 'test-rename_ard_groups.R:18:1', 'test-rename_ard_groups.R:27:1', 'test-round5.R:1:1', 'test-shuffle_ard.R:3:1', 'test-shuffle_ard.R:118:1', 'test-shuffle_ard.R:129:1', 'test-shuffle_ard.R:269:1', 'test-shuffle_ard.R:402:1', 'test-shuffle_ard.R:488:1', 'test-sort_ard_hierarchical.R:1:1', 'test-tidy_ard_row_order.R:1:1', 'test-tidy_as_ard.R:1:1', 'test-update_ard.R:1:1', 'test-update_ard.R:19:1', 'test-update_ard.R:28:1', 'test-update_ard.R:56:1', 'test-update_ard.R:64:1', 'test-ard_summary.R:1:1', 'test-ard_summary.R:34:1', 'test-ard_summary.R:84:1', 'test-ard_summary.R:104:1', 'test-ard_summary.R:228:1', 'test-ard_summary.R:249:1', 'test-ard_summary.R:419:1' • Required package 'hms' is not installed (1): 'test-ard_tabulate.R:1111:3' • package_version(paste(R.version$major, R.version$minor, sep = ".")) <= package_version("4.5.0") is not TRUE (2): 'test-ard_strata.R:73:3', 'test-ard_tabulate_value.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-ard_hierarchical.R:36:3'): ard_hierarchical() works with by variable ── Expected `... <- NULL` not to throw any errors. Actually got a <simpleError> with message: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-ard_hierarchical.R:36:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. ├─cards::ard_hierarchical(...) 8. └─cards:::ard_hierarchical.data.frame(...) 9. ├─cards::ard_tabulate(...) 10. └─cards:::ard_tabulate.data.frame(...) 11. └─cards:::.calculate_tabulation_statistics(...) 12. └─cards:::.process_denominator(...) 13. ├─rlang::rep_named(...) 14. │ └─rlang::set_names(rep_len(x, length(names)), names) 15. ├─tidyr::drop_na(...) 16. └─cards:::.table_as_df(...) 17. ├─dplyr::as_tibble(...) 18. └─tibble:::as_tibble.table(...) 19. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 20. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 21. ├─base::eval(ex) 22. │ └─base::eval(ex) 23. └─base::data.frame(...) 24. ├─base::as.data.frame(x[[i]], optional = TRUE) 25. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_hierarchical.R:47:3'): ard_hierarchical() works with by variable ── <objectNotFoundError/error/condition> Error in `eval(code, test_env)`: object 'ard_heir_with_by' not found Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_hierarchical.R:47:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─cards::get_ard_statistics(...) 5. │ └─dplyr::filter(x, ...) 6. └─dplyr::filter(...) ── Error ('test-ard_hierarchical.R:265:3'): ard_hierarchical() and ard_hierarchical_count() with grouped data works ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_hierarchical.R:265:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─cards::ard_hierarchical(...) 5. └─cards:::ard_hierarchical.data.frame(...) 6. ├─cards::ard_tabulate(...) 7. └─cards:::ard_tabulate.data.frame(...) 8. └─cards:::.calculate_tabulation_statistics(...) 9. └─cards:::.process_denominator(...) 10. ├─rlang::rep_named(...) 11. │ └─rlang::set_names(rep_len(x, length(names)), names) 12. ├─tidyr::drop_na(...) 13. └─cards:::.table_as_df(...) 14. ├─dplyr::as_tibble(...) 15. └─tibble:::as_tibble.table(...) 16. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 17. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 18. ├─base::eval(ex) 19. │ └─base::eval(ex) 20. └─base::data.frame(...) 21. ├─base::as.data.frame(x[[i]], optional = TRUE) 22. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_stack_hierarchical.R:64:3'): ard_stack_hierarchical(variables) messaging removed obs ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. └─cards::ard_stack_hierarchical(...) 2. └─cards:::internal_stack_hierarchical(...) 3. ├─base::append(...) 4. └─cards:::.run_hierarchical_fun(...) 5. ├─cards::ard_hierarchical(...) 6. └─cards:::ard_hierarchical.data.frame(...) 7. ├─cards::ard_tabulate(...) 8. └─cards:::ard_tabulate.data.frame(...) 9. └─cards:::.calculate_tabulation_statistics(...) 10. └─cards:::.process_denominator(...) 11. ├─rlang::rep_named(...) 12. │ └─rlang::set_names(rep_len(x, length(names)), names) 13. ├─tidyr::drop_na(...) 14. └─cards:::.table_as_df(...) 15. ├─dplyr::as_tibble(...) 16. └─tibble:::as_tibble.table(...) 17. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 19. ├─base::eval(ex) 20. │ └─base::eval(ex) 21. └─base::data.frame(...) 22. ├─base::as.data.frame(x[[i]], optional = TRUE) 23. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_stack_hierarchical.R:102:3'): ard_stack_hierarchical(by) ─── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_silent(...) at test-ard_stack_hierarchical.R:102:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─cards::ard_stack_hierarchical(...) 10. └─cards:::internal_stack_hierarchical(...) 11. ├─base::append(...) 12. └─cards:::.run_hierarchical_fun(...) 13. ├─cards::ard_hierarchical(...) 14. └─cards:::ard_hierarchical.data.frame(...) 15. ├─cards::ard_tabulate(...) 16. └─cards:::ard_tabulate.data.frame(...) 17. └─cards:::.calculate_tabulation_statistics(...) 18. └─cards:::.process_denominator(...) 19. ├─rlang::rep_named(...) 20. │ └─rlang::set_names(rep_len(x, length(names)), names) 21. ├─tidyr::drop_na(...) 22. └─cards:::.table_as_df(...) 23. ├─dplyr::as_tibble(...) 24. └─tibble:::as_tibble.table(...) 25. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 26. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 27. ├─base::eval(ex) 28. │ └─base::eval(ex) 29. └─base::data.frame(...) 30. ├─base::as.data.frame(x[[i]], optional = TRUE) 31. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_stack_hierarchical.R:173:3'): ard_stack_hierarchical(by) messaging ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. └─cards::ard_stack_hierarchical(...) 2. └─cards:::internal_stack_hierarchical(...) 3. ├─base::append(...) 4. └─cards:::.run_hierarchical_fun(...) 5. ├─cards::ard_hierarchical(...) 6. └─cards:::ard_hierarchical.data.frame(...) 7. ├─cards::ard_tabulate(...) 8. └─cards:::ard_tabulate.data.frame(...) 9. └─cards:::.calculate_tabulation_statistics(...) 10. └─cards:::.process_denominator(...) 11. ├─rlang::rep_named(...) 12. │ └─rlang::set_names(rep_len(x, length(names)), names) 13. ├─tidyr::drop_na(...) 14. └─cards:::.table_as_df(...) 15. ├─dplyr::as_tibble(...) 16. └─tibble:::as_tibble.table(...) 17. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 19. ├─base::eval(ex) 20. │ └─base::eval(ex) 21. └─base::data.frame(...) 22. ├─base::as.data.frame(x[[i]], optional = TRUE) 23. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_stack_hierarchical.R:232:3'): ard_stack_hierarchical(denominator) messaging ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_stack_hierarchical.R:232:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─cards::ard_stack_hierarchical(...) 5. └─cards:::internal_stack_hierarchical(...) 6. ├─base::append(...) 7. └─cards:::.run_hierarchical_fun(...) 8. ├─cards::ard_hierarchical(...) 9. └─cards:::ard_hierarchical.data.frame(...) 10. ├─cards::ard_tabulate(...) 11. └─cards:::ard_tabulate.data.frame(...) 12. └─cards:::.calculate_tabulation_statistics(...) 13. └─cards:::.process_denominator(...) 14. ├─rlang::rep_named(...) 15. │ └─rlang::set_names(rep_len(x, length(names)), names) 16. ├─tidyr::drop_na(...) 17. └─cards:::.table_as_df(...) 18. ├─dplyr::as_tibble(...) 19. └─tibble:::as_tibble.table(...) 20. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 21. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 22. ├─base::eval(ex) 23. │ └─base::eval(ex) 24. └─base::data.frame(...) 25. ├─base::as.data.frame(x[[i]], optional = TRUE) 26. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_stack_hierarchical.R:254:3'): ard_stack_hierarchical(by) with columns not in `denominator` ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_message(...) at test-ard_stack_hierarchical.R:254:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─cards::ard_stack_hierarchical(...) 8. └─cards:::internal_stack_hierarchical(...) 9. ├─base::append(...) 10. └─cards:::.run_hierarchical_fun(...) 11. ├─cards::ard_hierarchical(...) 12. └─cards:::ard_hierarchical.data.frame(...) 13. ├─cards::ard_tabulate(...) 14. └─cards:::ard_tabulate.data.frame(...) 15. └─cards:::.calculate_tabulation_statistics(...) 16. └─cards:::.process_denominator(...) 17. ├─rlang::rep_named(...) 18. │ └─rlang::set_names(rep_len(x, length(names)), names) 19. ├─tidyr::drop_na(...) 20. └─cards:::.table_as_df(...) 21. ├─dplyr::as_tibble(...) 22. └─tibble:::as_tibble.table(...) 23. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 24. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 25. ├─base::eval(ex) 26. │ └─base::eval(ex) 27. └─base::data.frame(...) 28. ├─base::as.data.frame(x[[i]], optional = TRUE) 29. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_stack_hierarchical.R:724:3'): ard_stack_hierarchical() by_stats argument ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_silent(...) at test-ard_stack_hierarchical.R:724:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─cards::ard_stack_hierarchical(...) 10. └─cards:::internal_stack_hierarchical(...) 11. ├─base::append(...) 12. └─cards:::.run_hierarchical_fun(...) 13. ├─cards::ard_hierarchical(...) 14. └─cards:::ard_hierarchical.data.frame(...) 15. ├─cards::ard_tabulate(...) 16. └─cards:::ard_tabulate.data.frame(...) 17. └─cards:::.calculate_tabulation_statistics(...) 18. └─cards:::.process_denominator(...) 19. ├─rlang::rep_named(...) 20. │ └─rlang::set_names(rep_len(x, length(names)), names) 21. ├─tidyr::drop_na(...) 22. └─cards:::.table_as_df(...) 23. ├─dplyr::as_tibble(...) 24. └─tibble:::as_tibble.table(...) 25. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 26. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 27. ├─base::eval(ex) 28. │ └─base::eval(ex) 29. └─base::data.frame(...) 30. ├─base::as.data.frame(x[[i]], optional = TRUE) 31. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Failure ('test-ard_tabulate.R:141:3'): ard_tabulate() with strata and by arguments ── Expected `... <- NULL` not to throw any errors. Actually got a <simpleError> with message: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-ard_tabulate.R:141:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. ├─cards::ard_tabulate(...) 8. └─cards:::ard_tabulate.data.frame(...) 9. └─cards:::.calculate_tabulation_statistics(...) 10. └─cards:::.process_denominator(...) 11. ├─rlang::rep_named(...) 12. │ └─rlang::set_names(rep_len(x, length(names)), names) 13. ├─tidyr::drop_na(...) 14. └─cards:::.table_as_df(...) 15. ├─dplyr::as_tibble(...) 16. └─tibble:::as_tibble.table(...) 17. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 19. ├─base::eval(ex) 20. │ └─base::eval(ex) 21. └─base::data.frame(...) 22. ├─base::as.data.frame(x[[i]], optional = TRUE) 23. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_tabulate.R:154:3'): ard_tabulate() with strata and by arguments ── <objectNotFoundError/error/condition> Error in `eval(code, test_env)`: object 'card_ae_strata' not found Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:154:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::nrow(...) 5. └─dplyr::filter(...) ── Error ('test-ard_tabulate.R:461:3'): ard_tabulate(denominator='row') works ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:461:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::unlist(...) 5. ├─dplyr::pull(...) 6. ├─cards::ard_tabulate(...) 7. └─cards:::ard_tabulate.data.frame(...) 8. └─cards:::.calculate_tabulation_statistics(...) 9. └─cards:::.process_denominator(...) 10. ├─stats::setNames(...) 11. └─base::lapply(...) 12. └─cards (local) FUN(X[[i]], ...) 13. ├─dplyr::summarise(...) 14. ├─tidyr::drop_na(...) 15. └─cards:::.table_as_df(...) 16. ├─dplyr::as_tibble(...) 17. └─tibble:::as_tibble.table(...) 18. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 19. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 20. ├─base::eval(ex) 21. │ └─base::eval(ex) 22. └─base::data.frame(...) 23. ├─base::as.data.frame(x[[i]], optional = TRUE) 24. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_tabulate.R:627:3'): ard_tabulate(denominator=<data frame without counts>) works ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:627:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::unique(...) 5. ├─base::unlist(...) 6. ├─dplyr::pull(...) 7. ├─cards::ard_tabulate(...) 8. └─cards:::ard_tabulate.data.frame(...) 9. └─cards:::.calculate_tabulation_statistics(...) 10. └─cards:::.process_denominator(...) 11. ├─rlang::rep_named(...) 12. │ └─rlang::set_names(rep_len(x, length(names)), names) 13. ├─tidyr::drop_na(...) 14. └─cards:::.table_as_df(...) 15. ├─dplyr::as_tibble(...) 16. └─tibble:::as_tibble.table(...) 17. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 19. ├─base::eval(ex) 20. │ └─base::eval(ex) 21. └─base::data.frame(...) 22. ├─base::as.data.frame(x[[i]], optional = TRUE) 23. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_tabulate.R:751:3'): ard_tabulate(strata) returns results in proper order ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:751:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::unique(...) 5. ├─base::unlist(...) 6. ├─dplyr::select(...) 7. ├─cards::ard_tabulate(...) 8. └─cards:::ard_tabulate.data.frame(...) 9. └─cards:::.calculate_tabulation_statistics(...) 10. └─cards:::.process_denominator(...) 11. ├─rlang::rep_named(...) 12. │ └─rlang::set_names(rep_len(x, length(names)), names) 13. ├─tidyr::drop_na(...) 14. └─cards:::.table_as_df(...) 15. ├─dplyr::as_tibble(...) 16. └─tibble:::as_tibble.table(...) 17. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 19. ├─base::eval(ex) 20. │ └─base::eval(ex) 21. └─base::data.frame(...) 22. ├─base::as.data.frame(x[[i]], optional = TRUE) 23. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_tabulate.R:1307:3'): ard_tabulate(denominator='row') with cumulative counts ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_silent(...) at test-ard_tabulate.R:1307:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. ├─cards::ard_tabulate(...) 10. └─cards:::ard_tabulate.data.frame(...) 11. └─cards:::.calculate_tabulation_statistics(...) 12. └─cards:::.process_denominator(...) 13. ├─stats::setNames(...) 14. └─base::lapply(...) 15. └─cards (local) FUN(X[[i]], ...) 16. ├─dplyr::summarise(...) 17. ├─tidyr::drop_na(...) 18. └─cards:::.table_as_df(...) 19. ├─dplyr::as_tibble(...) 20. └─tibble:::as_tibble.table(...) 21. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 22. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 23. ├─base::eval(ex) 24. │ └─base::eval(ex) 25. └─base::data.frame(...) 26. ├─base::as.data.frame(x[[i]], optional = TRUE) 27. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Failure ('test-shuffle_ard.R:349:3'): shuffle_ard() fills grouping columns with `Overall <var>` or `Any <var>` ── Expected `expect_warning(...)` not to throw any errors. Actually got a <simpleError> with message: row names contain missing values ── Error ('test-shuffle_ard.R:368:3'): shuffle_ard() fills grouping columns with `Overall <var>` or `Any <var>` ── <objectNotFoundError/error/condition> Error in `eval(code, test_env)`: object 'shuffled_ard' not found Backtrace: ▆ 1. ├─testthat::expect_identical(...) at test-shuffle_ard.R:368:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─dplyr::pull(...) 5. └─dplyr::filter(shuffled_ard, variable == "..ard_total_n..") ── Error ('test-shuffle_ard.R:624:3'): shuffle_ard() preserves the attributes of a `card` object ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. └─cards::ard_stack_hierarchical(...) at test-shuffle_ard.R:624:3 2. └─cards:::internal_stack_hierarchical(...) 3. ├─base::append(...) 4. └─cards:::.run_hierarchical_fun(...) 5. ├─cards::ard_hierarchical(...) 6. └─cards:::ard_hierarchical.data.frame(...) 7. ├─cards::ard_tabulate(...) 8. └─cards:::ard_tabulate.data.frame(...) 9. └─cards:::.calculate_tabulation_statistics(...) 10. └─cards:::.process_denominator(...) 11. ├─rlang::rep_named(...) 12. │ └─rlang::set_names(rep_len(x, length(names)), names) 13. ├─tidyr::drop_na(...) 14. └─cards:::.table_as_df(...) 15. ├─dplyr::as_tibble(...) 16. └─tibble:::as_tibble.table(...) 17. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 19. ├─base::eval(ex) 20. │ └─base::eval(ex) 21. └─base::data.frame(...) 22. ├─base::as.data.frame(x[[i]], optional = TRUE) 23. └─base::as.data.frame.integer(x[[i]], optional = TRUE) [ FAIL 18 | WARN 0 | SKIP 109 | PASS 293 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.7.1
Check: tests
Result: ERROR Running 'testthat.R' [110s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(cards) > > test_check("cards") Starting 2 test processes. Saving _problems/test-ard_hierarchical-45.R Saving _problems/test-ard_hierarchical-67.R Saving _problems/test-ard_hierarchical-278.R Saving _problems/test-ard_stack_hierarchical-73.R Saving _problems/test-ard_stack_hierarchical-111.R Saving _problems/test-ard_stack_hierarchical-182.R Saving _problems/test-ard_stack_hierarchical-249.R Saving _problems/test-ard_stack_hierarchical-263.R Saving _problems/test-ard_stack_hierarchical-734.R Saving _problems/test-ard_tabulate-151.R Saving _problems/test-ard_tabulate-162.R Saving _problems/test-ard_tabulate-471.R Saving _problems/test-ard_tabulate-640.R Saving _problems/test-ard_tabulate-769.R Saving _problems/test-ard_tabulate-1315.R > test-bind_ard.R: i 27 rows with duplicated statistic values have been removed. > test-bind_ard.R: * See cards::bind_ard(.distinct) (`?cards::bind_ard()`) for details. Saving _problems/test-shuffle_ard-366.R Saving _problems/test-shuffle_ard-375.R Saving _problems/test-shuffle_ard-633.R [ FAIL 18 | WARN 0 | SKIP 109 | PASS 293 ] ══ Skipped tests (109) ═════════════════════════════════════════════════════════ • On CRAN (106): 'test-add_calculated_row.R:1:1', 'test-add_calculated_row.R:24:1', 'test-add_calculated_row.R:32:1', 'test-apply_fmt_fun.R:86:1', 'test-apply_fmt_fun.R:122:1', 'test-ard_formals.R:1:1', 'test-ard_attributes.R:3:1', 'test-ard_attributes.R:28:1', 'test-ard_identity.R:28:1', 'test-ard_missing.R:1:1', 'test-ard_missing.R:29:1', 'test-ard_mvsummary.R:85:1', 'test-ard_mvsummary.R:128:1', 'test-ard_pairwise.R:52:1', 'test-ard_pairwise.R:89:1', 'test-ard_pairwise.R:96:1', 'test-ard_hierarchical.R:2:1', 'test-ard_hierarchical.R:107:1', 'test-ard_hierarchical.R:117:1', 'test-ard_hierarchical.R:143:1', 'test-ard_hierarchical.R:253:1', 'test-ard_hierarchical.R:305:1', 'test-ard_hierarchical.R:328:1', 'test-ard_stack.R:221:1', 'test-ard_stack.R:239:1', 'test-ard_stack.R:267:1', 'test-ard_stack_hierarchical.R:76:1', 'test-ard_stack_hierarchical.R:335:1', 'test-ard_stack_hierarchical.R:349:1', 'test-ard_stack_hierarchical.R:497:1', 'test-ard_stack_hierarchical.R:575:1', 'test-ard_stack_hierarchical.R:586:1', 'test-ard_stack_hierarchical.R:599:1', 'test-ard_stack_hierarchical.R:667:1', 'test-ard_strata.R:1:1', 'test-ard_tabulate.R:1:1', 'test-ard_tabulate.R:67:1', 'test-ard_tabulate.R:101:1', 'test-ard_tabulate.R:245:1', 'test-ard_tabulate.R:563:1', 'test-ard_tabulate.R:699:1', 'test-ard_tabulate.R:772:1', 'test-ard_tabulate.R:1081:1', 'test-ard_tabulate.R:1130:1', 'test-ard_tabulate.R:1371:1', 'test-ard_tabulate_value.R:49:1', 'test-ard_tabulate_value.R:102:1', 'test-ard_total_n.R:1:1', 'test-as_card.R:1:1', 'test-as_card.R:21:1', 'test-as_nested_list.R:1:1', 'test-bind_ard.R:11:1', 'test-bind_ard.R:25:1', 'test-bind_ard.R:58:1', 'test-check_ard_structure.R:1:1', 'test-eval_capture_conditions.R:1:1', 'test-eval_capture_conditions.R:37:1', 'test-eval_capture_conditions.R:63:1', 'test-filter_ard_hierarchical.R:1:1', 'test-get_ard_statistics.R:1:1', 'test-mock.R:1:1', 'test-mock.R:12:1', 'test-mock.R:24:1', 'test-mock.R:34:1', 'test-mock.R:45:1', 'test-mock.R:56:1', 'test-mock.R:67:1', 'test-mock.R:77:1', 'test-mock.R:88:1', 'test-mock.R:97:1', 'test-mock.R:105:1', 'test-options.R:29:1', 'test-print.R:1:1', 'test-print_ard_conditions.R:1:1', 'test-print_ard_conditions.R:69:1', 'test-print_ard_conditions.R:99:1', 'test-print_ard_conditions.R:110:1', 'test-print_ard_conditions.R:137:1', 'test-process_selectors.R:51:1', 'test-process_selectors.R:63:1', 'test-rename_ard_columns.R:32:1', 'test-rename_ard_groups.R:1:1', 'test-rename_ard_groups.R:18:1', 'test-rename_ard_groups.R:27:1', 'test-round5.R:1:1', 'test-shuffle_ard.R:3:1', 'test-shuffle_ard.R:118:1', 'test-shuffle_ard.R:129:1', 'test-shuffle_ard.R:269:1', 'test-shuffle_ard.R:402:1', 'test-shuffle_ard.R:488:1', 'test-sort_ard_hierarchical.R:1:1', 'test-tidy_ard_row_order.R:1:1', 'test-tidy_as_ard.R:1:1', 'test-update_ard.R:1:1', 'test-update_ard.R:19:1', 'test-update_ard.R:28:1', 'test-update_ard.R:56:1', 'test-update_ard.R:64:1', 'test-ard_summary.R:1:1', 'test-ard_summary.R:34:1', 'test-ard_summary.R:84:1', 'test-ard_summary.R:104:1', 'test-ard_summary.R:228:1', 'test-ard_summary.R:249:1', 'test-ard_summary.R:419:1' • Required package 'hms' is not installed (1): 'test-ard_tabulate.R:1111:3' • package_version(paste(R.version$major, R.version$minor, sep = ".")) <= package_version("4.5.0") is not TRUE (2): 'test-ard_strata.R:73:3', 'test-ard_tabulate_value.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-ard_hierarchical.R:36:3'): ard_hierarchical() works with by variable ── Expected `... <- NULL` not to throw any errors. Actually got a <simpleError> with message: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-ard_hierarchical.R:36:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. ├─cards::ard_hierarchical(...) 8. └─cards:::ard_hierarchical.data.frame(...) 9. ├─cards::ard_tabulate(...) 10. └─cards:::ard_tabulate.data.frame(...) 11. └─cards:::.calculate_tabulation_statistics(...) 12. └─cards:::.process_denominator(...) 13. ├─rlang::rep_named(...) 14. │ └─rlang::set_names(rep_len(x, length(names)), names) 15. ├─tidyr::drop_na(...) 16. └─cards:::.table_as_df(...) 17. ├─dplyr::as_tibble(...) 18. └─tibble:::as_tibble.table(...) 19. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 20. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 21. ├─base::eval(ex) 22. │ └─base::eval(ex) 23. └─base::data.frame(...) 24. ├─base::as.data.frame(x[[i]], optional = TRUE) 25. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_hierarchical.R:47:3'): ard_hierarchical() works with by variable ── <objectNotFoundError/error/condition> Error in `eval(code, test_env)`: object 'ard_heir_with_by' not found Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_hierarchical.R:47:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─cards::get_ard_statistics(...) 5. │ └─dplyr::filter(x, ...) 6. └─dplyr::filter(...) ── Error ('test-ard_hierarchical.R:265:3'): ard_hierarchical() and ard_hierarchical_count() with grouped data works ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_hierarchical.R:265:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─cards::ard_hierarchical(...) 5. └─cards:::ard_hierarchical.data.frame(...) 6. ├─cards::ard_tabulate(...) 7. └─cards:::ard_tabulate.data.frame(...) 8. └─cards:::.calculate_tabulation_statistics(...) 9. └─cards:::.process_denominator(...) 10. ├─rlang::rep_named(...) 11. │ └─rlang::set_names(rep_len(x, length(names)), names) 12. ├─tidyr::drop_na(...) 13. └─cards:::.table_as_df(...) 14. ├─dplyr::as_tibble(...) 15. └─tibble:::as_tibble.table(...) 16. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 17. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 18. ├─base::eval(ex) 19. │ └─base::eval(ex) 20. └─base::data.frame(...) 21. ├─base::as.data.frame(x[[i]], optional = TRUE) 22. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_stack_hierarchical.R:64:3'): ard_stack_hierarchical(variables) messaging removed obs ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. └─cards::ard_stack_hierarchical(...) 2. └─cards:::internal_stack_hierarchical(...) 3. ├─base::append(...) 4. └─cards:::.run_hierarchical_fun(...) 5. ├─cards::ard_hierarchical(...) 6. └─cards:::ard_hierarchical.data.frame(...) 7. ├─cards::ard_tabulate(...) 8. └─cards:::ard_tabulate.data.frame(...) 9. └─cards:::.calculate_tabulation_statistics(...) 10. └─cards:::.process_denominator(...) 11. ├─rlang::rep_named(...) 12. │ └─rlang::set_names(rep_len(x, length(names)), names) 13. ├─tidyr::drop_na(...) 14. └─cards:::.table_as_df(...) 15. ├─dplyr::as_tibble(...) 16. └─tibble:::as_tibble.table(...) 17. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 19. ├─base::eval(ex) 20. │ └─base::eval(ex) 21. └─base::data.frame(...) 22. ├─base::as.data.frame(x[[i]], optional = TRUE) 23. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_stack_hierarchical.R:102:3'): ard_stack_hierarchical(by) ─── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_silent(...) at test-ard_stack_hierarchical.R:102:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─cards::ard_stack_hierarchical(...) 10. └─cards:::internal_stack_hierarchical(...) 11. ├─base::append(...) 12. └─cards:::.run_hierarchical_fun(...) 13. ├─cards::ard_hierarchical(...) 14. └─cards:::ard_hierarchical.data.frame(...) 15. ├─cards::ard_tabulate(...) 16. └─cards:::ard_tabulate.data.frame(...) 17. └─cards:::.calculate_tabulation_statistics(...) 18. └─cards:::.process_denominator(...) 19. ├─rlang::rep_named(...) 20. │ └─rlang::set_names(rep_len(x, length(names)), names) 21. ├─tidyr::drop_na(...) 22. └─cards:::.table_as_df(...) 23. ├─dplyr::as_tibble(...) 24. └─tibble:::as_tibble.table(...) 25. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 26. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 27. ├─base::eval(ex) 28. │ └─base::eval(ex) 29. └─base::data.frame(...) 30. ├─base::as.data.frame(x[[i]], optional = TRUE) 31. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_stack_hierarchical.R:173:3'): ard_stack_hierarchical(by) messaging ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. └─cards::ard_stack_hierarchical(...) 2. └─cards:::internal_stack_hierarchical(...) 3. ├─base::append(...) 4. └─cards:::.run_hierarchical_fun(...) 5. ├─cards::ard_hierarchical(...) 6. └─cards:::ard_hierarchical.data.frame(...) 7. ├─cards::ard_tabulate(...) 8. └─cards:::ard_tabulate.data.frame(...) 9. └─cards:::.calculate_tabulation_statistics(...) 10. └─cards:::.process_denominator(...) 11. ├─rlang::rep_named(...) 12. │ └─rlang::set_names(rep_len(x, length(names)), names) 13. ├─tidyr::drop_na(...) 14. └─cards:::.table_as_df(...) 15. ├─dplyr::as_tibble(...) 16. └─tibble:::as_tibble.table(...) 17. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 19. ├─base::eval(ex) 20. │ └─base::eval(ex) 21. └─base::data.frame(...) 22. ├─base::as.data.frame(x[[i]], optional = TRUE) 23. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_stack_hierarchical.R:232:3'): ard_stack_hierarchical(denominator) messaging ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_stack_hierarchical.R:232:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─cards::ard_stack_hierarchical(...) 5. └─cards:::internal_stack_hierarchical(...) 6. ├─base::append(...) 7. └─cards:::.run_hierarchical_fun(...) 8. ├─cards::ard_hierarchical(...) 9. └─cards:::ard_hierarchical.data.frame(...) 10. ├─cards::ard_tabulate(...) 11. └─cards:::ard_tabulate.data.frame(...) 12. └─cards:::.calculate_tabulation_statistics(...) 13. └─cards:::.process_denominator(...) 14. ├─rlang::rep_named(...) 15. │ └─rlang::set_names(rep_len(x, length(names)), names) 16. ├─tidyr::drop_na(...) 17. └─cards:::.table_as_df(...) 18. ├─dplyr::as_tibble(...) 19. └─tibble:::as_tibble.table(...) 20. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 21. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 22. ├─base::eval(ex) 23. │ └─base::eval(ex) 24. └─base::data.frame(...) 25. ├─base::as.data.frame(x[[i]], optional = TRUE) 26. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_stack_hierarchical.R:254:3'): ard_stack_hierarchical(by) with columns not in `denominator` ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_message(...) at test-ard_stack_hierarchical.R:254:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─cards::ard_stack_hierarchical(...) 8. └─cards:::internal_stack_hierarchical(...) 9. ├─base::append(...) 10. └─cards:::.run_hierarchical_fun(...) 11. ├─cards::ard_hierarchical(...) 12. └─cards:::ard_hierarchical.data.frame(...) 13. ├─cards::ard_tabulate(...) 14. └─cards:::ard_tabulate.data.frame(...) 15. └─cards:::.calculate_tabulation_statistics(...) 16. └─cards:::.process_denominator(...) 17. ├─rlang::rep_named(...) 18. │ └─rlang::set_names(rep_len(x, length(names)), names) 19. ├─tidyr::drop_na(...) 20. └─cards:::.table_as_df(...) 21. ├─dplyr::as_tibble(...) 22. └─tibble:::as_tibble.table(...) 23. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 24. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 25. ├─base::eval(ex) 26. │ └─base::eval(ex) 27. └─base::data.frame(...) 28. ├─base::as.data.frame(x[[i]], optional = TRUE) 29. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_stack_hierarchical.R:724:3'): ard_stack_hierarchical() by_stats argument ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_silent(...) at test-ard_stack_hierarchical.R:724:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─cards::ard_stack_hierarchical(...) 10. └─cards:::internal_stack_hierarchical(...) 11. ├─base::append(...) 12. └─cards:::.run_hierarchical_fun(...) 13. ├─cards::ard_hierarchical(...) 14. └─cards:::ard_hierarchical.data.frame(...) 15. ├─cards::ard_tabulate(...) 16. └─cards:::ard_tabulate.data.frame(...) 17. └─cards:::.calculate_tabulation_statistics(...) 18. └─cards:::.process_denominator(...) 19. ├─rlang::rep_named(...) 20. │ └─rlang::set_names(rep_len(x, length(names)), names) 21. ├─tidyr::drop_na(...) 22. └─cards:::.table_as_df(...) 23. ├─dplyr::as_tibble(...) 24. └─tibble:::as_tibble.table(...) 25. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 26. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 27. ├─base::eval(ex) 28. │ └─base::eval(ex) 29. └─base::data.frame(...) 30. ├─base::as.data.frame(x[[i]], optional = TRUE) 31. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Failure ('test-ard_tabulate.R:141:3'): ard_tabulate() with strata and by arguments ── Expected `... <- NULL` not to throw any errors. Actually got a <simpleError> with message: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-ard_tabulate.R:141:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. ├─cards::ard_tabulate(...) 8. └─cards:::ard_tabulate.data.frame(...) 9. └─cards:::.calculate_tabulation_statistics(...) 10. └─cards:::.process_denominator(...) 11. ├─rlang::rep_named(...) 12. │ └─rlang::set_names(rep_len(x, length(names)), names) 13. ├─tidyr::drop_na(...) 14. └─cards:::.table_as_df(...) 15. ├─dplyr::as_tibble(...) 16. └─tibble:::as_tibble.table(...) 17. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 19. ├─base::eval(ex) 20. │ └─base::eval(ex) 21. └─base::data.frame(...) 22. ├─base::as.data.frame(x[[i]], optional = TRUE) 23. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_tabulate.R:154:3'): ard_tabulate() with strata and by arguments ── <objectNotFoundError/error/condition> Error in `eval(code, test_env)`: object 'card_ae_strata' not found Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:154:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::nrow(...) 5. └─dplyr::filter(...) ── Error ('test-ard_tabulate.R:461:3'): ard_tabulate(denominator='row') works ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:461:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::unlist(...) 5. ├─dplyr::pull(...) 6. ├─cards::ard_tabulate(...) 7. └─cards:::ard_tabulate.data.frame(...) 8. └─cards:::.calculate_tabulation_statistics(...) 9. └─cards:::.process_denominator(...) 10. ├─stats::setNames(...) 11. └─base::lapply(...) 12. └─cards (local) FUN(X[[i]], ...) 13. ├─dplyr::summarise(...) 14. ├─tidyr::drop_na(...) 15. └─cards:::.table_as_df(...) 16. ├─dplyr::as_tibble(...) 17. └─tibble:::as_tibble.table(...) 18. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 19. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 20. ├─base::eval(ex) 21. │ └─base::eval(ex) 22. └─base::data.frame(...) 23. ├─base::as.data.frame(x[[i]], optional = TRUE) 24. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_tabulate.R:627:3'): ard_tabulate(denominator=<data frame without counts>) works ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:627:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::unique(...) 5. ├─base::unlist(...) 6. ├─dplyr::pull(...) 7. ├─cards::ard_tabulate(...) 8. └─cards:::ard_tabulate.data.frame(...) 9. └─cards:::.calculate_tabulation_statistics(...) 10. └─cards:::.process_denominator(...) 11. ├─rlang::rep_named(...) 12. │ └─rlang::set_names(rep_len(x, length(names)), names) 13. ├─tidyr::drop_na(...) 14. └─cards:::.table_as_df(...) 15. ├─dplyr::as_tibble(...) 16. └─tibble:::as_tibble.table(...) 17. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 19. ├─base::eval(ex) 20. │ └─base::eval(ex) 21. └─base::data.frame(...) 22. ├─base::as.data.frame(x[[i]], optional = TRUE) 23. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_tabulate.R:751:3'): ard_tabulate(strata) returns results in proper order ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-ard_tabulate.R:751:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::unique(...) 5. ├─base::unlist(...) 6. ├─dplyr::select(...) 7. ├─cards::ard_tabulate(...) 8. └─cards:::ard_tabulate.data.frame(...) 9. └─cards:::.calculate_tabulation_statistics(...) 10. └─cards:::.process_denominator(...) 11. ├─rlang::rep_named(...) 12. │ └─rlang::set_names(rep_len(x, length(names)), names) 13. ├─tidyr::drop_na(...) 14. └─cards:::.table_as_df(...) 15. ├─dplyr::as_tibble(...) 16. └─tibble:::as_tibble.table(...) 17. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 19. ├─base::eval(ex) 20. │ └─base::eval(ex) 21. └─base::data.frame(...) 22. ├─base::as.data.frame(x[[i]], optional = TRUE) 23. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-ard_tabulate.R:1307:3'): ard_tabulate(denominator='row') with cumulative counts ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_silent(...) at test-ard_tabulate.R:1307:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. ├─cards::ard_tabulate(...) 10. └─cards:::ard_tabulate.data.frame(...) 11. └─cards:::.calculate_tabulation_statistics(...) 12. └─cards:::.process_denominator(...) 13. ├─stats::setNames(...) 14. └─base::lapply(...) 15. └─cards (local) FUN(X[[i]], ...) 16. ├─dplyr::summarise(...) 17. ├─tidyr::drop_na(...) 18. └─cards:::.table_as_df(...) 19. ├─dplyr::as_tibble(...) 20. └─tibble:::as_tibble.table(...) 21. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 22. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 23. ├─base::eval(ex) 24. │ └─base::eval(ex) 25. └─base::data.frame(...) 26. ├─base::as.data.frame(x[[i]], optional = TRUE) 27. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Failure ('test-shuffle_ard.R:349:3'): shuffle_ard() fills grouping columns with `Overall <var>` or `Any <var>` ── Expected `expect_warning(...)` not to throw any errors. Actually got a <simpleError> with message: row names contain missing values ── Error ('test-shuffle_ard.R:368:3'): shuffle_ard() fills grouping columns with `Overall <var>` or `Any <var>` ── <objectNotFoundError/error/condition> Error in `eval(code, test_env)`: object 'shuffled_ard' not found Backtrace: ▆ 1. ├─testthat::expect_identical(...) at test-shuffle_ard.R:368:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─dplyr::pull(...) 5. └─dplyr::filter(shuffled_ard, variable == "..ard_total_n..") ── Error ('test-shuffle_ard.R:624:3'): shuffle_ard() preserves the attributes of a `card` object ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. └─cards::ard_stack_hierarchical(...) at test-shuffle_ard.R:624:3 2. └─cards:::internal_stack_hierarchical(...) 3. ├─base::append(...) 4. └─cards:::.run_hierarchical_fun(...) 5. ├─cards::ard_hierarchical(...) 6. └─cards:::ard_hierarchical.data.frame(...) 7. ├─cards::ard_tabulate(...) 8. └─cards:::ard_tabulate.data.frame(...) 9. └─cards:::.calculate_tabulation_statistics(...) 10. └─cards:::.process_denominator(...) 11. ├─rlang::rep_named(...) 12. │ └─rlang::set_names(rep_len(x, length(names)), names) 13. ├─tidyr::drop_na(...) 14. └─cards:::.table_as_df(...) 15. ├─dplyr::as_tibble(...) 16. └─tibble:::as_tibble.table(...) 17. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 18. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 19. ├─base::eval(ex) 20. │ └─base::eval(ex) 21. └─base::data.frame(...) 22. ├─base::as.data.frame(x[[i]], optional = TRUE) 23. └─base::as.data.frame.integer(x[[i]], optional = TRUE) [ FAIL 18 | WARN 0 | SKIP 109 | PASS 293 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64