Last updated on 2025-10-31 01:48:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 12.12 | 158.99 | 171.11 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 8.54 | 113.32 | 121.86 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 89.00 | 189.82 | 278.82 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 104.00 | 195.17 | 299.17 | OK | |
| r-devel-windows-x86_64 | 1.1.0 | 14.00 | 168.00 | 182.00 | OK | |
| r-patched-linux-x86_64 | 1.1.0 | 0.42 | 2.27 | 2.69 | ERROR | |
| r-release-linux-x86_64 | 1.1.0 | 9.91 | 152.30 | 162.21 | OK | |
| r-release-macos-arm64 | 1.1.0 | 5.00 | 91.00 | 96.00 | ERROR | |
| r-release-macos-x86_64 | 1.1.0 | 13.00 | 154.00 | 167.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.0 | 14.00 | 169.00 | 183.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.0 | 4.00 | 74.00 | 78.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.1.0 | 6.00 | 99.00 | 105.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.1.0 | 21.00 | 217.00 | 238.00 | NOTE |
Version: 1.1.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘DESeq2’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-patched-linux-x86_64
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘bulkAnalyseR-Ex.R’ failed
The error most likely occurred in:
> ### Name: DEanalysis
> ### Title: Perform differential expression (DE) analysis on an expression
> ### matrix
> ### Aliases: DEanalysis DEanalysis_edger DEanalysis_deseq2
>
> ### ** Examples
>
> expression.matrix.preproc <- as.matrix(read.csv(
+ system.file("extdata", "expression_matrix_preprocessed.csv", package = "bulkAnalyseR"),
+ row.names = 1
+ ))[1:100, 1:4]
>
> anno <- AnnotationDbi::select(
+ getExportedValue('org.Mm.eg.db', 'org.Mm.eg.db'),
+ keys = rownames(expression.matrix.preproc),
+ keytype = 'ENSEMBL',
+ columns = 'SYMBOL'
+ ) %>%
+ dplyr::distinct(ENSEMBL, .keep_all = TRUE) %>%
+ dplyr::mutate(NAME = ifelse(is.na(SYMBOL), ENSEMBL, SYMBOL))
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'select': there is no package called ‘org.Mm.eg.db’
Calls: %>% ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘org.Mm.eg.db’
Flavor: r-oldrel-macos-arm64
Version: 1.1.0
Check: installed package size
Result: NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
doc 2.3Mb
extdata 3.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.