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CRAN Package Check Results for Package bonsaiforest

Last updated on 2026-11-03 00:54:20 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.1 56.08 649.93 706.01 OK
r-devel-linux-x86_64-debian-gcc 0.1.1 46.70 535.96 582.66 OK
r-devel-linux-x86_64-fedora-clang 0.1.1 47.00 343.16 390.16 OK
r-devel-linux-x86_64-fedora-gcc 0.1.1 46.00 475.98 521.98 OK
r-devel-windows-x86_64 0.1.1 74.00 448.00 522.00 ERROR
r-patched-linux-x86_64 0.1.1 57.78 685.64 743.42 OK
r-release-linux-x86_64 0.1.1 53.42 656.69 710.11 OK
r-release-macos-arm64 0.1.1 16.00 113.00 129.00 OK
r-release-macos-x86_64 0.1.1 44.00 668.00 712.00 OK
r-release-windows-x86_64 0.1.1 74.00 326.00 400.00 ERROR
r-oldrel-macos-arm64 0.1.1 OK
r-oldrel-macos-x86_64 0.1.1 39.00 614.00 653.00 OK
r-oldrel-windows-x86_64 0.1.1 87.00 426.00 513.00 ERROR

Check Details

Version: 0.1.1
Check: tests
Result: ERROR Running 'testthat.R' [106s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(bonsaiforest) Attaching package: 'bonsaiforest' The following object is masked from 'package:testthat': compare > > test_check("bonsaiforest") Compiling Stan program... specified C++17 make cmd is make -f "D:/RCompile/recent/R/etc/x64/Makeconf" -f "D:/RCompile/recent/R/share/make/winshlib.mk" CXX='$(CXX17) $(CXX17STD)' CXXFLAGS='$(CXX17FLAGS)' CXXPICFLAGS='$(CXX17PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX17LDFLAGS)' SHLIB_LD='$(SHLIB_CXX17LD)' SHLIB="fileb9905bd41758.dll" WIN=64 TCLBIN= OBJECTS="fileb9905bd41758.o" make would use make[1]: Entering directory '/d/temp/2026_10_25_01_50_00_21025/RtmpGqELcv' g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.7/Rcpp/include/" -I"D:/temp/2026_10_25_01_50_00_21025/RtmpuONEao/RLIBS_82b0754f70a4/RcppEigen/include/" -I"D:/temp/2026_10_25_01_50_00_21025/RtmpuONEao/RLIBS_82b0754f70a4/RcppEigen/include/unsupported" -I"D:/temp/2026_10_25_01_50_00_21025/RtmpuONEao/RLIBS_82b0754f70a4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.7/StanHeaders/include/src/" -I"D:/RCompile/CRANpkg/lib/4.7/StanHeaders/include/" -I"D:/RCompile/CRANpkg/lib/4.7/RcppParallel/include/" -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -ID:/RCompile/CRANpkg/lib/4.7/RcppParallel/include -I"D:/RCompile/CRANpkg/lib/4.7/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include "D:/RCompile/CRANpkg/lib/4.7/StanHeaders/include/stan/math/prim/fun/Eigen.hpp" -std=c++1y -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fileb9905bd41758.cpp -o fileb9905bd41758.o if test "zfileb9905bd41758.o" != "z"; then \ if test -e "fileb9905bd41758-win.def"; then \ echo g++ -shared -s -static-libgcc -o fileb9905bd41758.dll fileb9905bd41758-win.def fileb9905bd41758.o "D:/RCompile/CRANpkg/lib/4.7/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.7/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o fileb9905bd41758.dll fileb9905bd41758-win.def fileb9905bd41758.o "D:/RCompile/CRANpkg/lib/4.7/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.7/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \ else \ echo EXPORTS > tmp.def; \ nm fileb9905bd41758.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \ echo g++ -shared -s -static-libgcc -o fileb9905bd41758.dll tmp.def fileb9905bd41758.o "D:/RCompile/CRANpkg/lib/4.7/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.7/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o fileb9905bd41758.dll tmp.def fileb9905bd41758.o "D:/RCompile/CRANpkg/lib/4.7/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.7/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.7/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \ rm -f tmp.def; \ fi \ fi make[1]: Leaving directory '/d/temp/2026_10_25_01_50_00_21025/RtmpGqELcv' Saving _problems/test-horseshoe-14.R [ FAIL 2 | WARN 25 | SKIP 12 | PASS 68 ] ══ Skipped tests (12) ══════════════════════════════════════════════════════════ • On CRAN (12): 'test-horseshoe.R:60:3', 'test-plot.R:1:1', 'test-plot.R:6:1', 'test-plot.R:11:1', 'test-plot.R:16:1', 'test-print.R:1:1', 'test-print.R:6:1', 'test-print.R:11:1', 'test-print.R:16:1', 'test-simulation.R:12:1', 'test-simulation.R:19:1', 'test-simulation.R:26:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-horseshoe.R:2:3'): horseshoe outputs the right elements for survival ── Error in `compileCode(f, code, language = language, verbose = verbose)`: odel = modelb9907a6b54c3__namespace::modelb9907a6b54c3_; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]' 22 | return 0.5 * z.p.transpose() * z.inv_e_metric_ * z.p; D:/RCompile/CRANpkg/lib/4.7/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here 21 | double T(dense_e_point& z) { D:/RCompile/CRANpkg/lib/4.7/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m); | ^~~~~~~~~ make[1]: *** [D:/RCompile/recent/R/etc/x64/Makeconf:304: fileb9905bd41758.o] Error 1 Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-horseshoe.R:2:3 2. │ └─base::withCallingHandlers(...) 3. └─bonsaiforest::horseshoe(...) 4. ├─base::do.call(fit_function, args = list_arguments) 5. └─bonsaiforest (local) `<fn>`(iter = 20, warmup = 10, chains = 1, seed = 0, control = `<named list>`) 6. └─brms::brm(...) 7. └─brms::do_call(compile_model, compile_args) 8. └─brms:::eval2(call, envir = args, enclos = envir) 9. └─base::eval(expr, envir, ...) 10. └─base::eval(expr, envir, ...) 11. └─brms (local) .fun(...) 12. └─brms (local) .compile_model(model, ...) 13. ├─brms:::eval_silent(...) 14. │ └─base::eval(expr, envir) 15. │ └─base::eval(expr, envir) 16. └─brms::do_call(rstan::stan_model, args) 17. └─brms:::eval2(call, envir = args, enclos = envir) 18. └─base::eval(expr, envir, ...) 19. └─base::eval(expr, envir, ...) 20. └─rstan (local) .fun(model_code = .x1) 21. └─rstan:::cxxfunctionplus(...) 22. ├─pkgbuild::with_build_tools(...) 23. │ └─pkgbuild:::withr_with_path(rtools_path(), code) 24. │ └─base::force(code) 25. └─inline::cxxfunction(...) 26. └─inline:::compileCode(f, code, language = language, verbose = verbose) ── Error ('test-horseshoe.R:2:3'): horseshoe outputs the right elements for survival ── Error in `sink(type = "output")`: invalid connection Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-horseshoe.R:2:3 2. │ └─base::withCallingHandlers(...) 3. └─bonsaiforest::horseshoe(...) 4. ├─base::do.call(fit_function, args = list_arguments) 5. └─bonsaiforest (local) `<fn>`(iter = 20, warmup = 10, chains = 1, seed = 0, control = `<named list>`) 6. └─brms::brm(...) 7. └─brms::do_call(compile_model, compile_args) 8. └─brms:::eval2(call, envir = args, enclos = envir) 9. └─base::eval(expr, envir, ...) 10. └─base::eval(expr, envir, ...) 11. └─brms (local) .fun(...) 12. └─brms (local) .compile_model(model, ...) 13. ├─brms:::eval_silent(...) 14. │ └─base::eval(expr, envir) 15. │ └─base::eval(expr, envir) 16. └─brms::do_call(rstan::stan_model, args) 17. └─brms:::eval2(call, envir = args, enclos = envir) 18. └─base::eval(expr, envir, ...) 19. └─base::eval(expr, envir, ...) 20. └─rstan (local) .fun(model_code = .x1) 21. └─rstan:::cxxfunctionplus(...) 22. └─base::sink(type = "output") [ FAIL 2 | WARN 25 | SKIP 12 | PASS 68 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 0.1.1
Check: tests
Result: ERROR Running 'testthat.R' [103s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(bonsaiforest) Attaching package: 'bonsaiforest' The following object is masked from 'package:testthat': compare > > test_check("bonsaiforest") Compiling Stan program... specified C++17 make cmd is make -f "D:/RCompile/recent/R-4.6.1/etc/x64/Makeconf" -f "D:/RCompile/recent/R-4.6.1/share/make/winshlib.mk" CXX='$(CXX17) $(CXX17STD)' CXXFLAGS='$(CXX17FLAGS)' CXXPICFLAGS='$(CXX17PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX17LDFLAGS)' SHLIB_LD='$(SHLIB_CXX17LD)' SHLIB="file290c41d84098.dll" WIN=64 TCLBIN= OBJECTS="file290c41d84098.o" make would use make[1]: Entering directory '/d/temp/2026_10_28_01_50_00_27251/Rtmpw7VVCD' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.1/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/" -I"D:/temp/2026_10_28_01_50_00_27251/RtmpEVuMbB/RLIBS_1fdd0307117f/RcppEigen/include/" -I"D:/temp/2026_10_28_01_50_00_27251/RtmpEVuMbB/RLIBS_1fdd0307117f/RcppEigen/include/unsupported" -I"D:/temp/2026_10_28_01_50_00_27251/RtmpEVuMbB/RLIBS_1fdd0307117f/BH/include" -I"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/include/src/" -I"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/include/" -I"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include/" -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -ID:/RCompile/CRANpkg/lib/4.6/RcppParallel/include -I"D:/RCompile/CRANpkg/lib/4.6/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include "D:/RCompile/CRANpkg/lib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp" -std=c++1y -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c file290c41d84098.cpp -o file290c41d84098.o if test "zfile290c41d84098.o" != "z"; then \ if test -e "file290c41d84098-win.def"; then \ echo g++ -shared -s -static-libgcc -o file290c41d84098.dll file290c41d84098-win.def file290c41d84098.o "D:/RCompile/CRANpkg/lib/4.6/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.6.1/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o file290c41d84098.dll file290c41d84098-win.def file290c41d84098.o "D:/RCompile/CRANpkg/lib/4.6/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.6.1/bin/x64" -lR ; \ else \ echo EXPORTS > tmp.def; \ nm file290c41d84098.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \ echo g++ -shared -s -static-libgcc -o file290c41d84098.dll tmp.def file290c41d84098.o "D:/RCompile/CRANpkg/lib/4.6/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.6.1/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o file290c41d84098.dll tmp.def file290c41d84098.o "D:/RCompile/CRANpkg/lib/4.6/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.6.1/bin/x64" -lR ; \ rm -f tmp.def; \ fi \ fi make[1]: Leaving directory '/d/temp/2026_10_28_01_50_00_27251/Rtmpw7VVCD' Saving _problems/test-horseshoe-14.R [ FAIL 2 | WARN 25 | SKIP 12 | PASS 68 ] ══ Skipped tests (12) ══════════════════════════════════════════════════════════ • On CRAN (12): 'test-horseshoe.R:60:3', 'test-plot.R:1:1', 'test-plot.R:6:1', 'test-plot.R:11:1', 'test-plot.R:16:1', 'test-print.R:1:1', 'test-print.R:6:1', 'test-print.R:11:1', 'test-print.R:16:1', 'test-simulation.R:12:1', 'test-simulation.R:19:1', 'test-simulation.R:26:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-horseshoe.R:2:3'): horseshoe outputs the right elements for survival ── Error in `compileCode(f, code, language = language, verbose = verbose)`: odel290c47464636d__namespace::model290c47464636d_; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]' 22 | return 0.5 * z.p.transpose() * z.inv_e_metric_ * z.p; D:/RCompile/CRANpkg/lib/4.6/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here 21 | double T(dense_e_point& z) { D:/RCompile/CRANpkg/lib/4.6/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m); | ^~~~~~~~~ make[1]: *** [D:/RCompile/recent/R-4.6.1/etc/x64/Makeconf:304: file290c41d84098.o] Error 1 Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-horseshoe.R:2:3 2. │ └─base::withCallingHandlers(...) 3. └─bonsaiforest::horseshoe(...) 4. ├─base::do.call(fit_function, args = list_arguments) 5. └─bonsaiforest (local) `<fn>`(iter = 20, warmup = 10, chains = 1, seed = 0, control = `<named list>`) 6. └─brms::brm(...) 7. └─brms::do_call(compile_model, compile_args) 8. └─brms:::eval2(call, envir = args, enclos = envir) 9. └─base::eval(expr, envir, ...) 10. └─base::eval(expr, envir, ...) 11. └─brms (local) .fun(...) 12. └─brms (local) .compile_model(model, ...) 13. ├─brms:::eval_silent(...) 14. │ └─base::eval(expr, envir) 15. │ └─base::eval(expr, envir) 16. └─brms::do_call(rstan::stan_model, args) 17. └─brms:::eval2(call, envir = args, enclos = envir) 18. └─base::eval(expr, envir, ...) 19. └─base::eval(expr, envir, ...) 20. └─rstan (local) .fun(model_code = .x1) 21. └─rstan:::cxxfunctionplus(...) 22. ├─pkgbuild::with_build_tools(...) 23. │ └─pkgbuild:::withr_with_path(rtools_path(), code) 24. │ └─base::force(code) 25. └─inline::cxxfunction(...) 26. └─inline:::compileCode(f, code, language = language, verbose = verbose) ── Error ('test-horseshoe.R:2:3'): horseshoe outputs the right elements for survival ── Error in `sink(type = "output")`: invalid connection Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-horseshoe.R:2:3 2. │ └─base::withCallingHandlers(...) 3. └─bonsaiforest::horseshoe(...) 4. ├─base::do.call(fit_function, args = list_arguments) 5. └─bonsaiforest (local) `<fn>`(iter = 20, warmup = 10, chains = 1, seed = 0, control = `<named list>`) 6. └─brms::brm(...) 7. └─brms::do_call(compile_model, compile_args) 8. └─brms:::eval2(call, envir = args, enclos = envir) 9. └─base::eval(expr, envir, ...) 10. └─base::eval(expr, envir, ...) 11. └─brms (local) .fun(...) 12. └─brms (local) .compile_model(model, ...) 13. ├─brms:::eval_silent(...) 14. │ └─base::eval(expr, envir) 15. │ └─base::eval(expr, envir) 16. └─brms::do_call(rstan::stan_model, args) 17. └─brms:::eval2(call, envir = args, enclos = envir) 18. └─base::eval(expr, envir, ...) 19. └─base::eval(expr, envir, ...) 20. └─rstan (local) .fun(model_code = .x1) 21. └─rstan:::cxxfunctionplus(...) 22. └─base::sink(type = "output") [ FAIL 2 | WARN 25 | SKIP 12 | PASS 68 ] Error: ! Test failures. Execution halted Flavor: r-release-windows-x86_64

Version: 0.1.1
Check: tests
Result: ERROR Running 'testthat.R' [137s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(bonsaiforest) Attaching package: 'bonsaiforest' The following object is masked from 'package:testthat': compare > > test_check("bonsaiforest") Compiling Stan program... make cmd is make -f "D:/RCompile/recent/R-4.5.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-4.5.3/share/make/winshlib.mk" CXX='$(CXX17) $(CXX17STD)' CXXFLAGS='$(CXX17FLAGS)' CXXPICFLAGS='$(CXX17PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX17LDFLAGS)' SHLIB_LD='$(SHLIB_CXX17LD)' SHLIB="file830c5a3c35b5.dll" WIN=64 TCLBIN= OBJECTS="file830c5a3c35b5.o" make would use make[1]: Entering directory '/d/temp/2026_10_31_01_50_00_21721/Rtmp4Sfx5q' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/" -I"D:/temp/2026_10_31_01_50_00_21721/Rtmpi0sEEo/RLIBS_e8d875a241d2/RcppEigen/include/" -I"D:/temp/2026_10_31_01_50_00_21721/Rtmpi0sEEo/RLIBS_e8d875a241d2/RcppEigen/include/unsupported" -I"D:/temp/2026_10_31_01_50_00_21721/Rtmpi0sEEo/RLIBS_e8d875a241d2/BH/include" -I"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/src/" -I"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/" -I"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include/" -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -ID:/RCompile/CRANpkg/lib/4.5/RcppParallel/include -I"D:/RCompile/CRANpkg/lib/4.5/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include "D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp" -std=c++1y -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c file830c5a3c35b5.cpp -o file830c5a3c35b5.o if test "zfile830c5a3c35b5.o" != "z"; then \ if test -e "file830c5a3c35b5-win.def"; then \ echo g++ -shared -s -static-libgcc -o file830c5a3c35b5.dll file830c5a3c35b5-win.def file830c5a3c35b5.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o file830c5a3c35b5.dll file830c5a3c35b5-win.def file830c5a3c35b5.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ else \ echo EXPORTS > tmp.def; \ nm file830c5a3c35b5.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \ echo g++ -shared -s -static-libgcc -o file830c5a3c35b5.dll tmp.def file830c5a3c35b5.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o file830c5a3c35b5.dll tmp.def file830c5a3c35b5.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ rm -f tmp.def; \ fi \ fi make[1]: Leaving directory '/d/temp/2026_10_31_01_50_00_21721/Rtmp4Sfx5q' Saving _problems/test-horseshoe-14.R [ FAIL 2 | WARN 25 | SKIP 12 | PASS 68 ] ══ Skipped tests (12) ══════════════════════════════════════════════════════════ • On CRAN (12): 'test-horseshoe.R:60:3', 'test-plot.R:1:1', 'test-plot.R:6:1', 'test-plot.R:11:1', 'test-plot.R:16:1', 'test-print.R:1:1', 'test-print.R:6:1', 'test-print.R:11:1', 'test-print.R:16:1', 'test-simulation.R:12:1', 'test-simulation.R:19:1', 'test-simulation.R:26:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-horseshoe.R:2:3'): horseshoe outputs the right elements for survival ── Error in `compileCode(f, code, language = language, verbose = verbose)`: model830c545d3269__namespace::model830c545d3269_; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]' 22 | return 0.5 * z.p.transpose() * z.inv_e_metric_ * z.p; D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here 21 | double T(dense_e_point& z) { D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m); | ^~~~~~~~~ make[1]: *** [D:/RCompile/recent/R-4.5.3/etc/x64/Makeconf:302: file830c5a3c35b5.o] Error 1 Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-horseshoe.R:2:3 2. │ └─base::withCallingHandlers(...) 3. └─bonsaiforest::horseshoe(...) 4. ├─base::do.call(fit_function, args = list_arguments) 5. └─bonsaiforest (local) `<fn>`(iter = 20, warmup = 10, chains = 1, seed = 0, control = `<named list>`) 6. └─brms::brm(...) 7. └─brms::do_call(compile_model, compile_args) 8. └─brms:::eval2(call, envir = args, enclos = envir) 9. └─base::eval(expr, envir, ...) 10. └─base::eval(expr, envir, ...) 11. └─brms (local) .fun(...) 12. └─brms (local) .compile_model(model, ...) 13. ├─brms:::eval_silent(...) 14. │ └─base::eval(expr, envir) 15. │ └─base::eval(expr, envir) 16. └─brms::do_call(rstan::stan_model, args) 17. └─brms:::eval2(call, envir = args, enclos = envir) 18. └─base::eval(expr, envir, ...) 19. └─base::eval(expr, envir, ...) 20. └─rstan (local) .fun(model_code = .x1) 21. └─rstan:::cxxfunctionplus(...) 22. ├─pkgbuild::with_build_tools(...) 23. │ └─pkgbuild:::withr_with_path(rtools_path(), code) 24. │ └─base::force(code) 25. └─inline::cxxfunction(...) 26. └─inline:::compileCode(f, code, language = language, verbose = verbose) ── Error ('test-horseshoe.R:2:3'): horseshoe outputs the right elements for survival ── Error in `sink(type = "output")`: invalid connection Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-horseshoe.R:2:3 2. │ └─base::withCallingHandlers(...) 3. └─bonsaiforest::horseshoe(...) 4. ├─base::do.call(fit_function, args = list_arguments) 5. └─bonsaiforest (local) `<fn>`(iter = 20, warmup = 10, chains = 1, seed = 0, control = `<named list>`) 6. └─brms::brm(...) 7. └─brms::do_call(compile_model, compile_args) 8. └─brms:::eval2(call, envir = args, enclos = envir) 9. └─base::eval(expr, envir, ...) 10. └─base::eval(expr, envir, ...) 11. └─brms (local) .fun(...) 12. └─brms (local) .compile_model(model, ...) 13. ├─brms:::eval_silent(...) 14. │ └─base::eval(expr, envir) 15. │ └─base::eval(expr, envir) 16. └─brms::do_call(rstan::stan_model, args) 17. └─brms:::eval2(call, envir = args, enclos = envir) 18. └─base::eval(expr, envir, ...) 19. └─base::eval(expr, envir, ...) 20. └─rstan (local) .fun(model_code = .x1) 21. └─rstan:::cxxfunctionplus(...) 22. └─base::sink(type = "output") [ FAIL 2 | WARN 25 | SKIP 12 | PASS 68 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-windows-x86_64

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