Last updated on 2025-04-02 23:00:47 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.6.1 | 8.76 | 99.42 | 108.18 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 3.6.1 | 6.57 | 69.03 | 75.60 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 3.6.1 | 177.93 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 3.6.1 | 179.61 | OK | |||
| r-devel-macos-arm64 | 3.6.1 | 65.00 | OK | |||
| r-devel-macos-x86_64 | 3.6.1 | 110.00 | OK | |||
| r-devel-windows-x86_64 | 3.6.1 | 10.00 | 114.00 | 124.00 | OK | |
| r-patched-linux-x86_64 | 3.6.1 | 9.52 | 95.07 | 104.59 | ERROR | |
| r-release-linux-x86_64 | 3.6.1 | 7.63 | 92.81 | 100.44 | ERROR | |
| r-release-macos-arm64 | 3.6.1 | 53.00 | OK | |||
| r-release-macos-x86_64 | 3.6.1 | 115.00 | OK | |||
| r-release-windows-x86_64 | 3.6.1 | 13.00 | 112.00 | 125.00 | OK | |
| r-oldrel-macos-arm64 | 3.6.1 | OK | ||||
| r-oldrel-macos-x86_64 | 3.6.1 | 83.00 | OK | |||
| r-oldrel-windows-x86_64 | 3.6.1 | 13.00 | 136.00 | 149.00 | OK |
Version: 3.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/33s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(biodosetools)
>
> test_check("biodosetools")
! Problem with `glm()` -> constraint ML optimization will be used instead
! Problem with `glm()` -> constraint ML optimization will be used instead
number of iterations= 43
Loading required package: shiny
── Dose estimation calculations ────────────────────────────────────────────────
ℹ Parsing dose-effect curve...
── Dose estimation calculations ────────────────────────────────────────────────
ℹ Parsing dose-effect curve...
── Dose estimation calculations ────────────────────────────────────────────────
ℹ Parsing dose-effect curve...
! Problem with `glm()` -> constraint ML optimization will be used instead
! Problem with `glm()` -> constraint ML optimization will be used instead
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 234 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-golem-recommended.R:71:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-golem-recommended.R:2:3'): app ui ──────────────────────────────
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─biodosetools:::app_ui() at test-golem-recommended.R:2:3
2. ├─htmltools::tagList(...)
3. │ └─rlang::dots_list(...)
4. ├─shinydashboard::dashboardPage(...)
5. │ └─shinydashboard:::tagAssert(body, type = "div", class = "content-wrapper")
6. └─biodosetools:::dashboard_body()
7. ├─shinydashboard::dashboardBody(...)
8. │ ├─htmltools::div(...)
9. │ │ └─rlang::dots_list(...)
10. │ └─tags$section(class = "content", ...)
11. │ └─rlang::dots_list(...)
12. ├─shinydashboard::tabItems(...)
13. │ └─base::lapply(list(...), tagAssert, class = "tab-pane")
14. └─biodosetools:::dashboard_home()
15. ├─shinydashboard::tabItem(...)
16. │ └─htmltools::div(...)
17. │ └─rlang::dots_list(...)
18. ├─htmltools::div(...)
19. │ └─rlang::dots_list(...)
20. └─htmltools::includeMarkdown(...)
21. └─markdown::mark(path, output = NULL)
22. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file)
23. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)
24. └─base::file(con, "w")
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 234 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [13s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(biodosetools)
>
> test_check("biodosetools")
! Problem with `glm()` -> constraint ML optimization will be used instead
! Problem with `glm()` -> constraint ML optimization will be used instead
number of iterations= 43
Loading required package: shiny
── Dose estimation calculations ────────────────────────────────────────────────
ℹ Parsing dose-effect curve...
── Dose estimation calculations ────────────────────────────────────────────────
ℹ Parsing dose-effect curve...
── Dose estimation calculations ────────────────────────────────────────────────
ℹ Parsing dose-effect curve...
! Problem with `glm()` -> constraint ML optimization will be used instead
! Problem with `glm()` -> constraint ML optimization will be used instead
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 234 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-golem-recommended.R:71:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-golem-recommended.R:2:3'): app ui ──────────────────────────────
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─biodosetools:::app_ui() at test-golem-recommended.R:2:3
2. ├─htmltools::tagList(...)
3. │ └─rlang::dots_list(...)
4. ├─shinydashboard::dashboardPage(...)
5. │ └─shinydashboard:::tagAssert(body, type = "div", class = "content-wrapper")
6. └─biodosetools:::dashboard_body()
7. ├─shinydashboard::dashboardBody(...)
8. │ ├─htmltools::div(...)
9. │ │ └─rlang::dots_list(...)
10. │ └─tags$section(class = "content", ...)
11. │ └─rlang::dots_list(...)
12. ├─shinydashboard::tabItems(...)
13. │ └─base::lapply(list(...), tagAssert, class = "tab-pane")
14. └─biodosetools:::dashboard_home()
15. ├─shinydashboard::tabItem(...)
16. │ └─htmltools::div(...)
17. │ └─rlang::dots_list(...)
18. ├─htmltools::div(...)
19. │ └─rlang::dots_list(...)
20. └─htmltools::includeMarkdown(...)
21. └─markdown::mark(path, output = NULL)
22. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file)
23. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)
24. └─base::file(con, "w")
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 234 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/31s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(biodosetools)
>
> test_check("biodosetools")
! Problem with `glm()` -> constraint ML optimization will be used instead
! Problem with `glm()` -> constraint ML optimization will be used instead
number of iterations= 43
Loading required package: shiny
── Dose estimation calculations ────────────────────────────────────────────────
ℹ Parsing dose-effect curve...
── Dose estimation calculations ────────────────────────────────────────────────
ℹ Parsing dose-effect curve...
── Dose estimation calculations ────────────────────────────────────────────────
ℹ Parsing dose-effect curve...
! Problem with `glm()` -> constraint ML optimization will be used instead
! Problem with `glm()` -> constraint ML optimization will be used instead
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 234 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-golem-recommended.R:71:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-golem-recommended.R:2:3'): app ui ──────────────────────────────
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─biodosetools:::app_ui() at test-golem-recommended.R:2:3
2. ├─htmltools::tagList(...)
3. │ └─rlang::dots_list(...)
4. ├─shinydashboard::dashboardPage(...)
5. │ └─shinydashboard:::tagAssert(body, type = "div", class = "content-wrapper")
6. └─biodosetools:::dashboard_body()
7. ├─shinydashboard::dashboardBody(...)
8. │ ├─htmltools::div(...)
9. │ │ └─rlang::dots_list(...)
10. │ └─tags$section(class = "content", ...)
11. │ └─rlang::dots_list(...)
12. ├─shinydashboard::tabItems(...)
13. │ └─base::lapply(list(...), tagAssert, class = "tab-pane")
14. └─biodosetools:::dashboard_home()
15. ├─shinydashboard::tabItem(...)
16. │ └─htmltools::div(...)
17. │ └─rlang::dots_list(...)
18. ├─htmltools::div(...)
19. │ └─rlang::dots_list(...)
20. └─htmltools::includeMarkdown(...)
21. └─markdown::mark(path, output = NULL)
22. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file)
23. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)
24. └─base::file(con, "w")
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 234 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 3.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/26s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(biodosetools)
>
> test_check("biodosetools")
! Problem with `glm()` -> constraint ML optimization will be used instead
! Problem with `glm()` -> constraint ML optimization will be used instead
number of iterations= 43
Loading required package: shiny
── Dose estimation calculations ────────────────────────────────────────────────
ℹ Parsing dose-effect curve...
── Dose estimation calculations ────────────────────────────────────────────────
ℹ Parsing dose-effect curve...
── Dose estimation calculations ────────────────────────────────────────────────
ℹ Parsing dose-effect curve...
! Problem with `glm()` -> constraint ML optimization will be used instead
! Problem with `glm()` -> constraint ML optimization will be used instead
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 234 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-golem-recommended.R:71:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-golem-recommended.R:2:3'): app ui ──────────────────────────────
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─biodosetools:::app_ui() at test-golem-recommended.R:2:3
2. ├─htmltools::tagList(...)
3. │ └─rlang::dots_list(...)
4. ├─shinydashboard::dashboardPage(...)
5. │ └─shinydashboard:::tagAssert(body, type = "div", class = "content-wrapper")
6. └─biodosetools:::dashboard_body()
7. ├─shinydashboard::dashboardBody(...)
8. │ ├─htmltools::div(...)
9. │ │ └─rlang::dots_list(...)
10. │ └─tags$section(class = "content", ...)
11. │ └─rlang::dots_list(...)
12. ├─shinydashboard::tabItems(...)
13. │ └─base::lapply(list(...), tagAssert, class = "tab-pane")
14. └─biodosetools:::dashboard_home()
15. ├─shinydashboard::tabItem(...)
16. │ └─htmltools::div(...)
17. │ └─rlang::dots_list(...)
18. ├─htmltools::div(...)
19. │ └─rlang::dots_list(...)
20. └─htmltools::includeMarkdown(...)
21. └─markdown::mark(path, output = NULL)
22. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file)
23. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)
24. └─base::file(con, "w")
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 234 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
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