CRAN Package Check Results for Maintainer ‘Bernd Gruber <bernd.gruber at canberra.edu.au>’

Last updated on 2024-05-02 13:50:34 CEST.

Package	ERROR	NOTE	OK
dartR	1	11	1
dartR.base		4	9
dartR.captive			13
dartR.data			12
dartR.popgen		2	11
dartR.spatial			13
dartRverse		2	11
PopGenReport			12

Package dartR

Current CRAN status: ERROR: 1, NOTE: 11, OK: 1

Version: 2.9.7
Check: Rd files
Result: NOTE checkRd: (-1) gl.filter.maf.Rd:7: Lost braces; missing escapes or markup? 7 | {adegenet} object} | ^ checkRd: (-1) gl.pcoa.Rd:68: Lost braces; missing escapes or markup? 68 | The function is essentially a wrapper for glPca {adegenet} or pcoa \{ape\} | ^ checkRd: (-1) gl.play.history.Rd:17: Lost braces 17 | code{x2@other$history[c(1,4,5)]}). [optional].} | ^ checkRd: (-1) utils.jackknife.Rd:49: Lost braces 49 | bold{Note} that when n is very small, jackknife resampling is not recommended. | ^ checkRd: (-1) utils.jackknife.Rd:51: Lost braces 51 | Parallel computation is implemented. The argument code{n.cores} indicates the | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64

Version: 2.9.7
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘snpStats’ Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64

Version: 2.9.7
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘snpStats’ Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64

Version: 2.9.7
Check: examples
Result: ERROR Running examples in 'dartR-Ex.R' failed The error most likely occurred in: > ### Name: gl.pcoa.plot > ### Title: Bivariate or trivariate plot of the results of an ordination > ### generated using gl.pcoa() > ### Aliases: gl.pcoa.plot > > ### ** Examples > > test <- gl.pcoa(platypus.gl) Starting gl.pcoa Processing genlight object with SNP data Warning: data include loci that are scored NA across all individuals. Consider filtering using gl <- gl.filter.allna(gl) Performing a PCA, individuals as entities, loci as attributes, SNP genotype as state Flavor: r-oldrel-windows-x86_64

Package dartR.base

Current CRAN status: NOTE: 4, OK: 9

Version: 0.65
Check: installed package size
Result: NOTE installed size is 5.1Mb sub-directories of 1Mb or more: R 2.0Mb help 2.2Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.65
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘snpStats’ Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64

Version: 0.65
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘snpStats’ Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64

Package dartR.captive

Current CRAN status: OK: 13

Package dartR.data

Current CRAN status: OK: 12

Package dartR.popgen

Current CRAN status: NOTE: 2, OK: 11

Version: 0.32
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘snpStats’ Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64

Version: 0.32
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘snpStats’ Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64

Package dartR.spatial

Current CRAN status: OK: 13

Package dartRverse

Current CRAN status: NOTE: 2, OK: 11

Version: 0.51
Check: whether startup messages can be suppressed
Result: NOTE Error: package or namespace load failed for ‘dartRverse’: .onAttach failed in attachNamespace() for 'dartRverse', details: call: utils::packageVersion(pkg) error: there is no package called ‘dartR.popgen’ Execution halted It looks like this package (or a package it requires) has a startup message which cannot be suppressed: see ?packageStartupMessage. Flavor: r-release-macos-arm64

Version: 0.51
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'dartR.sim', 'dartR.spatial' Flavor: r-release-macos-x86_64

Package PopGenReport

Current CRAN status: OK: 12