The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Last updated on 2026-10-12 23:49:51 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.11 | 60.47 | 142.10 | 202.57 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.11 | 49.13 | 221.92 | 271.05 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1.11 | 52.00 | 204.16 | 256.16 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.11 | 54.00 | 214.37 | 268.37 | NOTE | |
| r-devel-windows-x86_64 | 0.1.11 | 89.00 | 496.00 | 585.00 | NOTE | |
| r-patched-linux-x86_64 | 0.1.11 | 64.66 | 305.26 | 369.92 | OK | |
| r-release-linux-x86_64 | 0.1.11 | 66.38 | 302.07 | 368.45 | OK | |
| r-release-macos-arm64 | 0.1.11 | 13.00 | 76.00 | 89.00 | OK | |
| r-release-macos-x86_64 | 0.1.11 | 38.00 | 331.00 | 369.00 | OK | |
| r-release-windows-x86_64 | 0.1.11 | 88.00 | 415.00 | 503.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.11 | 12.00 | 105.00 | 117.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.11 | 42.00 | 393.00 | 435.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.11 | 102.00 | 501.00 | 603.00 | OK |
Version: 0.1.11
Check: R code for possible problems
Result: NOTE
Found calls to structure() using deprecated special names:
babelmixr2/R/monolixNlmixr2est.R (.Label: 1)
'.Label' should be changed to 'levels'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.1.11
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [5s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(babelmixr2)
>
> test_check("babelmixr2")
*** caught segfault ***
address (nil), cause 'memory not mapped'
Traceback:
1: .rxOptExprC(.norm)
2: rxOptExpr(.txt, msg = msg, chunkLines = 0L)
3: .rxOptExprChunked(x, msg = msg, chunkLines = .chunkLines, parallel = parallel)
4: rxode2::rxOptExpr(.s$..pred, ifelse(.getRxPredLlikOption(), "Llik EBE model", "EBE model"), parallel = cores)
5: .rxFinalizePred(.s, .sumProd, .optExpression, .optExprCores(x[[1]]))
6: rxUiGet.getEBEEnv(x, ...)
7: rxUiGet.ebe(.obj)
8: rxUiGet(.obj)
9: `$.rxUi`(.ui, "ebe")
10: .ui$ebe
11: .monolixFinalizeEnv(.ret, .ui)
12: .monolixFamilyFit(env, ...)
13: nlmixr2est::.uiFinalizeMu2(.monolixFamilyFit(env, ...), .model)
14: nlmixr2Est.monolix(env, ...)
15: nlmixr2Est(env, ...)
16: withCallingHandlers(expr, warning = function(w) { assign("ws", unique(c(w$message, ws)), this.env)}, error = function(e) { assign("es", unique(c(e$message, es)), this.env)})
17: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
18: suppressWarnings(withCallingHandlers(expr, warning = function(w) { assign("ws", unique(c(w$message, ws)), this.env)}, error = function(e) { assign("es", unique(c(e$message, es)), this.env)}))
19: doTryCatch(return(expr), name, parentenv, handler)
20: tryCatchOne(expr, names, parentenv, handlers[[1L]])
21: tryCatchList(expr, classes, parentenv, handlers)
22: tryCatch(suppressWarnings(withCallingHandlers(expr, warning = function(w) { assign("ws", unique(c(w$message, ws)), this.env)}, error = function(e) { assign("es", unique(c(e$message, es)), this.env)})), error = function(e) { assign("errored", TRUE, this.env) NULL})
23: .collectWarn(nlmixr2Est(env, ...), lst = TRUE, collectErr = TRUE)
24: nlmixr2Est0(.env)
25: nlmixr2.function(...)
26: nlmixr2est::nlmixr(...)
27: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
28: suppressMessages(nlmixr2est::nlmixr(...))
29: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
30: suppressWarnings(suppressMessages(nlmixr2est::nlmixr(...)))
31: .nlmixr(pk.turnover.emax3, nlmixr2data::warfarin, "monolix", control = monolixControl(modelName = "pk.turnover.emax3"))
32: force(code)
33: withr::with_dir(tmp, code)
34: withr::with_tempdir({ unzip(.path) f <- .nlmixr(pk.turnover.emax3, nlmixr2data::warfarin, "monolix", control = monolixControl(modelName = "pk.turnover.emax3")) expect_true(inherits(f, "nlmixr2FitData"))})
35: eval(code, test_env)
36: eval(code, test_env)
37: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
38: doTryCatch(return(expr), name, parentenv, handler)
39: tryCatchOne(expr, names, parentenv, handlers[[1L]])
40: tryCatchList(expr, classes, parentenv, handlers)
41: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
42: doWithOneRestart(return(expr), restart)
43: withOneRestart(expr, restarts[[1L]])
44: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
45: test_code(code, parent.frame())
46: test_that("test monolix reading for 2019, 2020, and 2021", { if (file.exists(test_path("pk.turnover.emax3-2019.zip"))) { .path <- normalizePath(test_path("pk.turnover.emax3-2019.zip")) withr::with_tempdir({ unzip(.path) f <- .nlmixr(pk.turnover.emax3, nlmixr2data::warfarin, "monolix", control = monolixControl(modelName = "pk.turnover.emax3")) expect_true(inherits(f, "nlmixr2FitData")) }) } if (file.exists("pk.turnover.emax3-2020.zip")) { .path <- normalizePath(test_path("pk.turnover.emax3-2020.zip")) withr::with_tempdir({ unzip(.path) f <- .nlmixr(pk.turnover.emax3, nlmixr2data::warfarin, "monolix", control = monolixControl(modelName = "pk.turnover.emax3")) expect_true(inherits(f, "nlmixr2FitData")) }) } if (file.exists("pk.turnover.emax3-2021.zip")) { .path <- normalizePath(test_path("pk.turnover.emax3-2021.zip")) withr::with_tempdir({ unzip(.path) f <- .nlmixr(pk.turnover.emax3, nlmixr2data::warfarin, "monolix", control = monolixControl(modelName = "pk.turnover.emax3")) expect_true(inherits(f, "nlmixr2FitData")) }) }})
47: eval(code, test_env)
48: eval(code, test_env)
49: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
50: doTryCatch(return(expr), name, parentenv, handler)
51: tryCatchOne(expr, names, parentenv, handlers[[1L]])
52: tryCatchList(expr, classes, parentenv, handlers)
53: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
54: doWithOneRestart(return(expr), restart)
55: withOneRestart(expr, restarts[[1L]])
56: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
57: test_code(code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new())
58: source_file(path, env = env(env), desc = desc, shuffle = shuffle, error_call = error_call)
59: FUN(X[[i]], ...)
60: lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call)
61: doTryCatch(return(expr), name, parentenv, handler)
62: tryCatchOne(expr, names, parentenv, handlers[[1L]])
63: tryCatchList(expr, classes, parentenv, handlers)
64: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
65: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call))
66: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, shuffle = shuffle, error_call = error_call)
67: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel, shuffle = shuffle)
68: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
69: test_check("babelmixr2")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavor: r-devel-linux-x86_64-debian-clang
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.