Last updated on 2025-06-01 11:49:56 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.0.3 | 12.89 | 950.17 | 963.06 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 3.0.3 | 7.19 | 740.57 | 747.76 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 3.0.3 | 1532.48 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 3.0.3 | 1542.37 | ERROR | |||
| r-devel-windows-x86_64 | 3.0.3 | 13.00 | 668.00 | 681.00 | ERROR | |
| r-patched-linux-x86_64 | 3.0.3 | 10.28 | 886.59 | 896.87 | ERROR | |
| r-release-linux-x86_64 | 3.0.3 | 12.24 | 903.49 | 915.73 | ERROR | |
| r-release-macos-arm64 | 3.0.3 | 202.00 | OK | |||
| r-release-macos-x86_64 | 3.0.3 | 411.00 | OK | |||
| r-release-windows-x86_64 | 3.0.3 | 13.00 | 743.00 | 756.00 | ERROR | |
| r-oldrel-macos-arm64 | 3.0.3 | 280.00 | OK | |||
| r-oldrel-macos-x86_64 | 3.0.3 | 438.00 | OK | |||
| r-oldrel-windows-x86_64 | 3.0.3 | 17.00 | 1104.00 | 1121.00 | ERROR |
Version: 3.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [15m/14m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(TreatmentPatterns)
>
> test_check("TreatmentPatterns")
Starting 2 test processes
[ FAIL 1 | WARN 6 | SKIP 60 | PASS 170 ]
══ Skipped tests (60) ══════════════════════════════════════════════════════════
• Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3',
'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3',
'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3',
'test-multipleCohortTables.R:68:3', 'test-computePathways.R:8:3',
'test-computePathways.R:53:3'
• On CRAN (45): 'test-CDMInterface.R:7:3', 'test-export.R:314:3',
'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3',
'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3',
'test-export.R:685:3', 'test-pathwaysLogical.R:8:3',
'test-pathwaysLogical.R:50:3', 'test-pathwaysLogical.R:94:3',
'test-pathwaysLogical.R:138:3', 'test-pathwaysLogical.R:182:3',
'test-pathwaysLogical.R:225:3', 'test-pathwaysLogical.R:270:3',
'test-pathwaysLogical.R:315:3', 'test-pathwaysLogical.R:359:3',
'test-pathwaysLogical.R:403:3', 'test-pathwaysLogical.R:447:3',
'test-pathwaysLogical.R:491:3', 'test-pathwaysLogical.R:535:3',
'test-pathwaysLogical.R:579:3', 'test-pathwaysLogical.R:624:3',
'test-pathwaysLogical.R:669:3', 'test-pathwaysLogical.R:712:3',
'test-pathwaysLogical.R:755:3', 'test-pathwaysLogical.R:800:3',
'test-pathwaysLogical.R:845:3', 'test-pathwaysLogical.R:886:3',
'test-pathwaysLogical.R:929:3', 'test-pathwaysLogical.R:971:3',
'test-pathwaysLogical.R:1013:3', 'test-pathwaysLogical.R:1055:3',
'test-pathwaysLogical.R:1098:3', 'test-pathwaysLogical.R:1144:3',
'test-pathwaysLogical.R:1188:3', 'test-pathwaysLogical.R:1232:3',
'test-pathwaysLogical.R:1276:3', 'test-pathwaysLogical.R:1322:3',
'test-pathwaysLogical.R:1369:3', 'test-pathwaysLogical.R:1416:3',
'test-pathwaysLogical.R:1462:3',
'test-pathwaysMultipleTargetsLogical.R:19:3',
'test-pathwaysMultipleTargetsLogical.R:225:3'
• On Linux (7): 'test-executeTreatmentPatterns.R:10:3', 'test-export.R:30:3',
'test-export.R:99:3', 'test-export.R:149:3', 'test-export.R:193:3',
'test-export.R:237:3', 'test-computePathways.R:715:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-CDMInterfaceCDMC.R:92:3'): Method: fetchCohortTable ────────────
Error: unable to find an inherited method for function 'dbWriteTable' for signature 'conn = "Andromeda", name = "character", value = "cohort_table"'
Backtrace:
▆
1. └─cdmInterface$fetchCohortTable(...) at test-CDMInterfaceCDMC.R:92:3
2. └─private$cdmconFetchCohortTable(...)
3. ├─methods (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
4. └─Andromeda (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
5. ├─methods (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
6. └─Andromeda (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
7. └─Andromeda (local) .local(x, i, ..., value)
8. └─duckdb::dbWriteTable(...)
9. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
[ FAIL 1 | WARN 6 | SKIP 60 | PASS 170 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [686s/444s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(TreatmentPatterns)
>
> test_check("TreatmentPatterns")
Starting 2 test processes
[ FAIL 1 | WARN 6 | SKIP 60 | PASS 170 ]
══ Skipped tests (60) ══════════════════════════════════════════════════════════
• Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3',
'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3',
'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3',
'test-multipleCohortTables.R:68:3', 'test-computePathways.R:8:3',
'test-computePathways.R:53:3'
• On CRAN (45): 'test-CDMInterface.R:7:3', 'test-export.R:314:3',
'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3',
'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3',
'test-export.R:685:3', 'test-pathwaysLogical.R:8:3',
'test-pathwaysLogical.R:50:3', 'test-pathwaysLogical.R:94:3',
'test-pathwaysLogical.R:138:3', 'test-pathwaysLogical.R:182:3',
'test-pathwaysLogical.R:225:3', 'test-pathwaysLogical.R:270:3',
'test-pathwaysLogical.R:315:3', 'test-pathwaysLogical.R:359:3',
'test-pathwaysLogical.R:403:3', 'test-pathwaysLogical.R:447:3',
'test-pathwaysLogical.R:491:3', 'test-pathwaysLogical.R:535:3',
'test-pathwaysLogical.R:579:3', 'test-pathwaysLogical.R:624:3',
'test-pathwaysLogical.R:669:3', 'test-pathwaysLogical.R:712:3',
'test-pathwaysLogical.R:755:3', 'test-pathwaysLogical.R:800:3',
'test-pathwaysLogical.R:845:3', 'test-pathwaysLogical.R:886:3',
'test-pathwaysLogical.R:929:3', 'test-pathwaysLogical.R:971:3',
'test-pathwaysLogical.R:1013:3', 'test-pathwaysLogical.R:1055:3',
'test-pathwaysLogical.R:1098:3', 'test-pathwaysLogical.R:1144:3',
'test-pathwaysLogical.R:1188:3', 'test-pathwaysLogical.R:1232:3',
'test-pathwaysLogical.R:1276:3', 'test-pathwaysLogical.R:1322:3',
'test-pathwaysLogical.R:1369:3', 'test-pathwaysLogical.R:1416:3',
'test-pathwaysLogical.R:1462:3',
'test-pathwaysMultipleTargetsLogical.R:19:3',
'test-pathwaysMultipleTargetsLogical.R:225:3'
• On Linux (7): 'test-executeTreatmentPatterns.R:10:3', 'test-export.R:30:3',
'test-export.R:99:3', 'test-export.R:149:3', 'test-export.R:193:3',
'test-export.R:237:3', 'test-computePathways.R:715:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-CDMInterfaceCDMC.R:92:3'): Method: fetchCohortTable ────────────
Error: unable to find an inherited method for function 'dbWriteTable' for signature 'conn = "Andromeda", name = "character", value = "cohort_table"'
Backtrace:
▆
1. └─cdmInterface$fetchCohortTable(...) at test-CDMInterfaceCDMC.R:92:3
2. └─private$cdmconFetchCohortTable(...)
3. ├─methods (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
4. └─Andromeda (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
5. ├─methods (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
6. └─Andromeda (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
7. └─Andromeda (local) .local(x, i, ..., value)
8. └─duckdb::dbWriteTable(...)
9. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
[ FAIL 1 | WARN 6 | SKIP 60 | PASS 170 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [23m/23m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(TreatmentPatterns)
>
> test_check("TreatmentPatterns")
Starting 2 test processes
[ FAIL 1 | WARN 6 | SKIP 60 | PASS 170 ]
══ Skipped tests (60) ══════════════════════════════════════════════════════════
• Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3',
'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3',
'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3',
'test-multipleCohortTables.R:68:3', 'test-computePathways.R:8:3',
'test-computePathways.R:53:3'
• On CRAN (45): 'test-CDMInterface.R:7:3', 'test-export.R:314:3',
'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3',
'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3',
'test-export.R:685:3', 'test-pathwaysLogical.R:8:3',
'test-pathwaysLogical.R:50:3', 'test-pathwaysLogical.R:94:3',
'test-pathwaysLogical.R:138:3', 'test-pathwaysLogical.R:182:3',
'test-pathwaysLogical.R:225:3', 'test-pathwaysLogical.R:270:3',
'test-pathwaysLogical.R:315:3', 'test-pathwaysLogical.R:359:3',
'test-pathwaysLogical.R:403:3', 'test-pathwaysLogical.R:447:3',
'test-pathwaysLogical.R:491:3', 'test-pathwaysLogical.R:535:3',
'test-pathwaysLogical.R:579:3', 'test-pathwaysLogical.R:624:3',
'test-pathwaysLogical.R:669:3', 'test-pathwaysLogical.R:712:3',
'test-pathwaysLogical.R:755:3', 'test-pathwaysLogical.R:800:3',
'test-pathwaysLogical.R:845:3', 'test-pathwaysLogical.R:886:3',
'test-pathwaysLogical.R:929:3', 'test-pathwaysLogical.R:971:3',
'test-pathwaysLogical.R:1013:3', 'test-pathwaysLogical.R:1055:3',
'test-pathwaysLogical.R:1098:3', 'test-pathwaysLogical.R:1144:3',
'test-pathwaysLogical.R:1188:3', 'test-pathwaysLogical.R:1232:3',
'test-pathwaysLogical.R:1276:3', 'test-pathwaysLogical.R:1322:3',
'test-pathwaysLogical.R:1369:3', 'test-pathwaysLogical.R:1416:3',
'test-pathwaysLogical.R:1462:3',
'test-pathwaysMultipleTargetsLogical.R:19:3',
'test-pathwaysMultipleTargetsLogical.R:225:3'
• On Linux (7): 'test-executeTreatmentPatterns.R:10:3', 'test-export.R:30:3',
'test-export.R:99:3', 'test-export.R:149:3', 'test-export.R:193:3',
'test-export.R:237:3', 'test-computePathways.R:715:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-CDMInterfaceCDMC.R:92:3'): Method: fetchCohortTable ────────────
Error: unable to find an inherited method for function 'dbWriteTable' for signature 'conn = "Andromeda", name = "character", value = "cohort_table"'
Backtrace:
▆
1. └─cdmInterface$fetchCohortTable(...) at test-CDMInterfaceCDMC.R:92:3
2. └─private$cdmconFetchCohortTable(...)
3. ├─methods (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
4. └─Andromeda (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
5. ├─methods (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
6. └─Andromeda (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
7. └─Andromeda (local) .local(x, i, ..., value)
8. └─duckdb::dbWriteTable(...)
9. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
[ FAIL 1 | WARN 6 | SKIP 60 | PASS 170 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [23m/29m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(TreatmentPatterns)
>
> test_check("TreatmentPatterns")
Starting 2 test processes
[ FAIL 1 | WARN 6 | SKIP 60 | PASS 170 ]
══ Skipped tests (60) ══════════════════════════════════════════════════════════
• Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3',
'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3',
'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3',
'test-multipleCohortTables.R:68:3', 'test-computePathways.R:8:3',
'test-computePathways.R:53:3'
• On CRAN (45): 'test-CDMInterface.R:7:3', 'test-export.R:314:3',
'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3',
'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3',
'test-export.R:685:3', 'test-pathwaysLogical.R:8:3',
'test-pathwaysLogical.R:50:3', 'test-pathwaysLogical.R:94:3',
'test-pathwaysLogical.R:138:3', 'test-pathwaysLogical.R:182:3',
'test-pathwaysLogical.R:225:3', 'test-pathwaysLogical.R:270:3',
'test-pathwaysLogical.R:315:3', 'test-pathwaysLogical.R:359:3',
'test-pathwaysLogical.R:403:3', 'test-pathwaysLogical.R:447:3',
'test-pathwaysLogical.R:491:3', 'test-pathwaysLogical.R:535:3',
'test-pathwaysLogical.R:579:3', 'test-pathwaysLogical.R:624:3',
'test-pathwaysLogical.R:669:3', 'test-pathwaysLogical.R:712:3',
'test-pathwaysLogical.R:755:3', 'test-pathwaysLogical.R:800:3',
'test-pathwaysLogical.R:845:3', 'test-pathwaysLogical.R:886:3',
'test-pathwaysLogical.R:929:3', 'test-pathwaysLogical.R:971:3',
'test-pathwaysLogical.R:1013:3', 'test-pathwaysLogical.R:1055:3',
'test-pathwaysLogical.R:1098:3', 'test-pathwaysLogical.R:1144:3',
'test-pathwaysLogical.R:1188:3', 'test-pathwaysLogical.R:1232:3',
'test-pathwaysLogical.R:1276:3', 'test-pathwaysLogical.R:1322:3',
'test-pathwaysLogical.R:1369:3', 'test-pathwaysLogical.R:1416:3',
'test-pathwaysLogical.R:1462:3',
'test-pathwaysMultipleTargetsLogical.R:19:3',
'test-pathwaysMultipleTargetsLogical.R:225:3'
• On Linux (7): 'test-executeTreatmentPatterns.R:10:3', 'test-export.R:30:3',
'test-export.R:99:3', 'test-export.R:149:3', 'test-export.R:193:3',
'test-export.R:237:3', 'test-computePathways.R:715:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-CDMInterfaceCDMC.R:92:3'): Method: fetchCohortTable ────────────
Error: unable to find an inherited method for function 'dbWriteTable' for signature 'conn = "Andromeda", name = "character", value = "cohort_table"'
Backtrace:
▆
1. └─cdmInterface$fetchCohortTable(...) at test-CDMInterfaceCDMC.R:92:3
2. └─private$cdmconFetchCohortTable(...)
3. ├─methods (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
4. └─Andromeda (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
5. ├─methods (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
6. └─Andromeda (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
7. └─Andromeda (local) .local(x, i, ..., value)
8. └─duckdb::dbWriteTable(...)
9. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
[ FAIL 1 | WARN 6 | SKIP 60 | PASS 170 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 3.0.3
Check: tests
Result: ERROR
Running 'testthat.R' [581s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(TreatmentPatterns)
>
> test_check("TreatmentPatterns")
Starting 2 test processes
[ FAIL 1 | WARN 6 | SKIP 58 | PASS 172 ]
══ Skipped tests (58) ══════════════════════════════════════════════════════════
• Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3',
'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3',
'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3',
'test-multipleCohortTables.R:68:3', 'test-computePathways.R:8:3',
'test-computePathways.R:53:3'
• On CRAN (50): 'test-CDMInterface.R:7:3', 'test-export.R:31:3',
'test-export.R:100:3', 'test-export.R:150:3', 'test-export.R:194:3',
'test-export.R:238:3', 'test-export.R:314:3', 'test-export.R:381:3',
'test-export.R:428:3', 'test-export.R:470:3', 'test-export.R:514:3',
'test-export.R:589:3', 'test-export.R:657:3', 'test-export.R:685:3',
'test-pathwaysLogical.R:8:3', 'test-pathwaysLogical.R:50:3',
'test-pathwaysLogical.R:94:3', 'test-pathwaysLogical.R:138:3',
'test-pathwaysLogical.R:182:3', 'test-pathwaysLogical.R:225:3',
'test-pathwaysLogical.R:270:3', 'test-pathwaysLogical.R:315:3',
'test-pathwaysLogical.R:359:3', 'test-pathwaysLogical.R:403:3',
'test-pathwaysLogical.R:447:3', 'test-pathwaysLogical.R:491:3',
'test-pathwaysLogical.R:535:3', 'test-pathwaysLogical.R:579:3',
'test-pathwaysLogical.R:624:3', 'test-pathwaysLogical.R:669:3',
'test-pathwaysLogical.R:712:3', 'test-pathwaysLogical.R:755:3',
'test-pathwaysLogical.R:800:3', 'test-pathwaysLogical.R:845:3',
'test-pathwaysLogical.R:886:3', 'test-pathwaysLogical.R:929:3',
'test-pathwaysLogical.R:971:3', 'test-pathwaysLogical.R:1013:3',
'test-pathwaysLogical.R:1055:3', 'test-pathwaysLogical.R:1098:3',
'test-pathwaysLogical.R:1144:3', 'test-pathwaysLogical.R:1188:3',
'test-pathwaysLogical.R:1232:3', 'test-pathwaysLogical.R:1276:3',
'test-pathwaysLogical.R:1322:3', 'test-pathwaysLogical.R:1369:3',
'test-pathwaysLogical.R:1416:3', 'test-pathwaysLogical.R:1462:3',
'test-pathwaysMultipleTargetsLogical.R:19:3',
'test-pathwaysMultipleTargetsLogical.R:225:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-CDMInterfaceCDMC.R:92:3'): Method: fetchCohortTable ────────────
Error: unable to find an inherited method for function 'dbWriteTable' for signature 'conn = "Andromeda", name = "character", value = "cohort_table"'
Backtrace:
▆
1. └─cdmInterface$fetchCohortTable(...) at test-CDMInterfaceCDMC.R:92:3
2. └─private$cdmconFetchCohortTable(...)
3. ├─methods (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
4. └─Andromeda (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
5. ├─methods (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
6. └─Andromeda (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
7. └─Andromeda (local) .local(x, i, ..., value)
8. └─duckdb::dbWriteTable(...)
9. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
[ FAIL 1 | WARN 6 | SKIP 58 | PASS 172 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 3.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [14m/13m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(TreatmentPatterns)
>
> test_check("TreatmentPatterns")
Starting 2 test processes
[ FAIL 1 | WARN 6 | SKIP 60 | PASS 170 ]
══ Skipped tests (60) ══════════════════════════════════════════════════════════
• Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3',
'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3',
'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3',
'test-multipleCohortTables.R:68:3', 'test-computePathways.R:8:3',
'test-computePathways.R:53:3'
• On CRAN (45): 'test-CDMInterface.R:7:3', 'test-export.R:314:3',
'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3',
'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3',
'test-export.R:685:3', 'test-pathwaysLogical.R:8:3',
'test-pathwaysLogical.R:50:3', 'test-pathwaysLogical.R:94:3',
'test-pathwaysLogical.R:138:3', 'test-pathwaysLogical.R:182:3',
'test-pathwaysLogical.R:225:3', 'test-pathwaysLogical.R:270:3',
'test-pathwaysLogical.R:315:3', 'test-pathwaysLogical.R:359:3',
'test-pathwaysLogical.R:403:3', 'test-pathwaysLogical.R:447:3',
'test-pathwaysLogical.R:491:3', 'test-pathwaysLogical.R:535:3',
'test-pathwaysLogical.R:579:3', 'test-pathwaysLogical.R:624:3',
'test-pathwaysLogical.R:669:3', 'test-pathwaysLogical.R:712:3',
'test-pathwaysLogical.R:755:3', 'test-pathwaysLogical.R:800:3',
'test-pathwaysLogical.R:845:3', 'test-pathwaysLogical.R:886:3',
'test-pathwaysLogical.R:929:3', 'test-pathwaysLogical.R:971:3',
'test-pathwaysLogical.R:1013:3', 'test-pathwaysLogical.R:1055:3',
'test-pathwaysLogical.R:1098:3', 'test-pathwaysLogical.R:1144:3',
'test-pathwaysLogical.R:1188:3', 'test-pathwaysLogical.R:1232:3',
'test-pathwaysLogical.R:1276:3', 'test-pathwaysLogical.R:1322:3',
'test-pathwaysLogical.R:1369:3', 'test-pathwaysLogical.R:1416:3',
'test-pathwaysLogical.R:1462:3',
'test-pathwaysMultipleTargetsLogical.R:19:3',
'test-pathwaysMultipleTargetsLogical.R:225:3'
• On Linux (7): 'test-executeTreatmentPatterns.R:10:3', 'test-export.R:30:3',
'test-export.R:99:3', 'test-export.R:149:3', 'test-export.R:193:3',
'test-export.R:237:3', 'test-computePathways.R:715:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-CDMInterfaceCDMC.R:92:3'): Method: fetchCohortTable ────────────
Error: unable to find an inherited method for function 'dbWriteTable' for signature 'conn = "Andromeda", name = "character", value = "cohort_table"'
Backtrace:
▆
1. └─cdmInterface$fetchCohortTable(...) at test-CDMInterfaceCDMC.R:92:3
2. └─private$cdmconFetchCohortTable(...)
3. ├─methods (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
4. └─Andromeda (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
5. ├─methods (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
6. └─Andromeda (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
7. └─Andromeda (local) .local(x, i, ..., value)
8. └─duckdb::dbWriteTable(...)
9. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
[ FAIL 1 | WARN 6 | SKIP 60 | PASS 170 ]
Error: Test failures
Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 3.0.3
Check: tests
Result: ERROR
Running 'testthat.R' [571s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(TreatmentPatterns)
>
> test_check("TreatmentPatterns")
Starting 2 test processes
[ FAIL 1 | WARN 6 | SKIP 58 | PASS 172 ]
══ Skipped tests (58) ══════════════════════════════════════════════════════════
• Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3',
'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3',
'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3',
'test-multipleCohortTables.R:68:3', 'test-computePathways.R:8:3',
'test-computePathways.R:53:3'
• On CRAN (50): 'test-CDMInterface.R:7:3', 'test-export.R:31:3',
'test-export.R:100:3', 'test-export.R:150:3', 'test-export.R:194:3',
'test-export.R:238:3', 'test-export.R:314:3', 'test-export.R:381:3',
'test-export.R:428:3', 'test-export.R:470:3', 'test-export.R:514:3',
'test-export.R:589:3', 'test-export.R:657:3', 'test-export.R:685:3',
'test-pathwaysLogical.R:8:3', 'test-pathwaysLogical.R:50:3',
'test-pathwaysLogical.R:94:3', 'test-pathwaysLogical.R:138:3',
'test-pathwaysLogical.R:182:3', 'test-pathwaysLogical.R:225:3',
'test-pathwaysLogical.R:270:3', 'test-pathwaysLogical.R:315:3',
'test-pathwaysLogical.R:359:3', 'test-pathwaysLogical.R:403:3',
'test-pathwaysLogical.R:447:3', 'test-pathwaysLogical.R:491:3',
'test-pathwaysLogical.R:535:3', 'test-pathwaysLogical.R:579:3',
'test-pathwaysLogical.R:624:3', 'test-pathwaysLogical.R:669:3',
'test-pathwaysLogical.R:712:3', 'test-pathwaysLogical.R:755:3',
'test-pathwaysLogical.R:800:3', 'test-pathwaysLogical.R:845:3',
'test-pathwaysLogical.R:886:3', 'test-pathwaysLogical.R:929:3',
'test-pathwaysLogical.R:971:3', 'test-pathwaysLogical.R:1013:3',
'test-pathwaysLogical.R:1055:3', 'test-pathwaysLogical.R:1098:3',
'test-pathwaysLogical.R:1144:3', 'test-pathwaysLogical.R:1188:3',
'test-pathwaysLogical.R:1232:3', 'test-pathwaysLogical.R:1276:3',
'test-pathwaysLogical.R:1322:3', 'test-pathwaysLogical.R:1369:3',
'test-pathwaysLogical.R:1416:3', 'test-pathwaysLogical.R:1462:3',
'test-pathwaysMultipleTargetsLogical.R:19:3',
'test-pathwaysMultipleTargetsLogical.R:225:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-CDMInterfaceCDMC.R:92:3'): Method: fetchCohortTable ────────────
Error: unable to find an inherited method for function 'dbWriteTable' for signature 'conn = "Andromeda", name = "character", value = "cohort_table"'
Backtrace:
▆
1. └─cdmInterface$fetchCohortTable(...) at test-CDMInterfaceCDMC.R:92:3
2. └─private$cdmconFetchCohortTable(...)
3. ├─methods (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
4. └─Andromeda (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
5. ├─methods (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
6. └─Andromeda (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
7. └─Andromeda (local) .local(x, i, ..., value)
8. └─duckdb::dbWriteTable(...)
9. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
[ FAIL 1 | WARN 6 | SKIP 58 | PASS 172 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 3.0.3
Check: tests
Result: ERROR
Running 'testthat.R' [14m]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(TreatmentPatterns)
>
> test_check("TreatmentPatterns")
Starting 2 test processes
[ FAIL 1 | WARN 6 | SKIP 58 | PASS 172 ]
══ Skipped tests (58) ══════════════════════════════════════════════════════════
• Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3',
'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3',
'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3',
'test-multipleCohortTables.R:68:3', 'test-computePathways.R:8:3',
'test-computePathways.R:53:3'
• On CRAN (50): 'test-CDMInterface.R:7:3', 'test-export.R:31:3',
'test-export.R:100:3', 'test-export.R:150:3', 'test-export.R:194:3',
'test-export.R:238:3', 'test-export.R:314:3', 'test-export.R:381:3',
'test-export.R:428:3', 'test-export.R:470:3', 'test-export.R:514:3',
'test-export.R:589:3', 'test-export.R:657:3', 'test-export.R:685:3',
'test-pathwaysLogical.R:8:3', 'test-pathwaysLogical.R:50:3',
'test-pathwaysLogical.R:94:3', 'test-pathwaysLogical.R:138:3',
'test-pathwaysLogical.R:182:3', 'test-pathwaysLogical.R:225:3',
'test-pathwaysLogical.R:270:3', 'test-pathwaysLogical.R:315:3',
'test-pathwaysLogical.R:359:3', 'test-pathwaysLogical.R:403:3',
'test-pathwaysLogical.R:447:3', 'test-pathwaysLogical.R:491:3',
'test-pathwaysLogical.R:535:3', 'test-pathwaysLogical.R:579:3',
'test-pathwaysLogical.R:624:3', 'test-pathwaysLogical.R:669:3',
'test-pathwaysLogical.R:712:3', 'test-pathwaysLogical.R:755:3',
'test-pathwaysLogical.R:800:3', 'test-pathwaysLogical.R:845:3',
'test-pathwaysLogical.R:886:3', 'test-pathwaysLogical.R:929:3',
'test-pathwaysLogical.R:971:3', 'test-pathwaysLogical.R:1013:3',
'test-pathwaysLogical.R:1055:3', 'test-pathwaysLogical.R:1098:3',
'test-pathwaysLogical.R:1144:3', 'test-pathwaysLogical.R:1188:3',
'test-pathwaysLogical.R:1232:3', 'test-pathwaysLogical.R:1276:3',
'test-pathwaysLogical.R:1322:3', 'test-pathwaysLogical.R:1369:3',
'test-pathwaysLogical.R:1416:3', 'test-pathwaysLogical.R:1462:3',
'test-pathwaysMultipleTargetsLogical.R:19:3',
'test-pathwaysMultipleTargetsLogical.R:225:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-CDMInterfaceCDMC.R:92:3'): Method: fetchCohortTable ────────────
Error: unable to find an inherited method for function 'dbWriteTable' for signature 'conn = "Andromeda", name = "character", value = "cohort_table"'
Backtrace:
▆
1. └─cdmInterface$fetchCohortTable(...) at test-CDMInterfaceCDMC.R:92:3
2. └─private$cdmconFetchCohortTable(...)
3. ├─methods (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
4. └─Andromeda (local) `$<-`(`*tmp*`, "tbl_temp", value = `<chrt_tbl[,7]>`)
5. ├─methods (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
6. └─Andromeda (local) `[[<-`(`*tmp*`, name, value = `<chrt_tbl[,7]>`)
7. └─Andromeda (local) .local(x, i, ..., value)
8. └─duckdb::dbWriteTable(...)
9. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
[ FAIL 1 | WARN 6 | SKIP 58 | PASS 172 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
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