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Last updated on 2026-04-30 05:51:15 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 15.84 | 265.66 | 281.50 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 10.17 | 180.03 | 190.20 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 28.00 | 406.72 | 434.72 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 26.00 | 417.46 | 443.46 | OK | |
| r-devel-windows-x86_64 | 1.0.0 | 22.00 | 255.00 | 277.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 15.05 | 245.98 | 261.03 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 15.55 | 244.22 | 259.77 | OK | |
| r-release-macos-arm64 | 1.0.0 | 4.00 | 67.00 | 71.00 | OK | |
| r-release-macos-x86_64 | 1.0.0 | 11.00 | 155.00 | 166.00 | ERROR | |
| r-release-windows-x86_64 | 1.0.0 | 19.00 | 255.00 | 274.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 4.00 | 69.00 | 73.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.0 | 11.00 | 176.00 | 187.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.0 | 26.00 | 348.00 | 374.00 | OK |
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘FAQs.Rmd’ using rmarkdown
--- finished re-building ‘FAQs.Rmd’
--- re-building ‘Pk_Pv_Pf_Serology_Tutorial.Rmd’ using rmarkdown
Quitting from Pk_Pv_Pf_Serology_Tutorial.Rmd:63-72 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dyn.load()`:
! unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so':
dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE
Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so
Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib
---
Backtrace:
▆
1. ├─SeroTrackR::runPlasmoPipeline(...)
2. │ └─SeroTrackR::classifyResults(...)
3. │ ├─dplyr::mutate(...)
4. │ ├─stats::predict(model, new_data = rau_data, type = "prob")
5. │ └─workflows:::predict.workflow(model, new_data = rau_data, type = "prob")
6. │ └─workflows:::forge_predictors(new_data, workflow)
7. │ ├─hardhat::forge(new_data, blueprint = mold$blueprint)
8. │ └─hardhat:::forge.data.frame(new_data, blueprint = mold$blueprint)
9. │ ├─hardhat::run_forge(blueprint, new_data = new_data, outcomes = outcomes)
10. │ └─hardhat:::run_forge.default_recipe_blueprint(...)
11. │ └─hardhat:::forge_recipe_default_process(...)
12. └─base::loadNamespace(x)
13. ├─base::namespaceImportFrom(...)
14. │ └─base::asNamespace(ns)
15. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
16. ├─base::namespaceImportFrom(...)
17. │ └─base::asNamespace(ns)
18. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
19. ├─base::namespaceImport(...)
20. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
21. └─base::library.dynam(lib, package, package.lib)
22. └─base::dyn.load(file, DLLpath = DLLpath, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Pk_Pv_Pf_Serology_Tutorial.Rmd' failed with diagnostics:
unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so':
dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE
Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so
Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib
--- failed re-building ‘Pk_Pv_Pf_Serology_Tutorial.Rmd’
--- re-building ‘PvLDH_Tutorial.Rmd’ using rmarkdown
--- finished re-building ‘PvLDH_Tutorial.Rmd’
--- re-building ‘PvSeroApp_R_Tutorial.Rmd’ using rmarkdown
Quitting from PvSeroApp_R_Tutorial.Rmd:75-86 [runPvSeroPipeline with classification]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dyn.load()`:
! unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so':
dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE
Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so
Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib
---
Backtrace:
▆
1. ├─SeroTrackR::runPvSeroPipeline(...)
2. │ └─SeroTrackR::classifyResults(...)
3. │ ├─dplyr::mutate(...)
4. │ ├─stats::predict(model, new_data = rau_data, type = "prob")
5. │ └─workflows:::predict.workflow(model, new_data = rau_data, type = "prob")
6. │ └─workflows:::forge_predictors(new_data, workflow)
7. │ ├─hardhat::forge(new_data, blueprint = mold$blueprint)
8. │ └─hardhat:::forge.data.frame(new_data, blueprint = mold$blueprint)
9. │ ├─hardhat::run_forge(blueprint, new_data = new_data, outcomes = outcomes)
10. │ └─hardhat:::run_forge.default_recipe_blueprint(...)
11. │ └─hardhat:::forge_recipe_default_process(...)
12. └─base::loadNamespace(x)
13. ├─base::namespaceImportFrom(...)
14. │ └─base::asNamespace(ns)
15. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
16. ├─base::namespaceImportFrom(...)
17. │ └─base::asNamespace(ns)
18. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
19. ├─base::namespaceImport(...)
20. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
21. └─base::library.dynam(lib, package, package.lib)
22. └─base::dyn.load(file, DLLpath = DLLpath, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'PvSeroApp_R_Tutorial.Rmd' failed with diagnostics:
unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so':
dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE
Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so
Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib
--- failed re-building ‘PvSeroApp_R_Tutorial.Rmd’
--- re-building ‘setup.Rmd’ using rmarkdown
[WARNING] Could not fetch resource ../man/figures/magpix_raw.jpeg
[WARNING] Could not fetch resource ../man/figures/bioplex_raw.jpeg
[WARNING] Could not fetch resource ../man/figures/plate_layout_1.jpeg
--- finished re-building ‘setup.Rmd’
SUMMARY: processing the following files failed:
‘Pk_Pv_Pf_Serology_Tutorial.Rmd’ ‘PvSeroApp_R_Tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
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