CRAN Package Check Results for Package SMDIC

Last updated on 2024-10-20 01:48:43 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.6	48.14	437.91	486.05	OK
r-devel-linux-x86_64-debian-gcc	0.1.6	32.92	319.25	352.17	OK
r-devel-linux-x86_64-fedora-clang	0.1.6			846.10	OK
r-devel-linux-x86_64-fedora-gcc	0.1.6			781.68	OK
r-devel-windows-x86_64	0.1.6	67.00	384.00	451.00	OK
r-patched-linux-x86_64	0.1.6	41.75	397.81	439.56	OK
r-release-linux-x86_64	0.1.5	44.59	388.34	432.93	ERROR
r-release-macos-arm64	0.1.6			145.00	OK
r-release-macos-x86_64	0.1.6			245.00	OK
r-release-windows-x86_64	0.1.6	51.00	363.00	414.00	OK
r-oldrel-macos-arm64	0.1.6			10.00	ERROR
r-oldrel-macos-x86_64	0.1.6			11.00	ERROR
r-oldrel-windows-x86_64	0.1.6	59.00	431.00	490.00	OK

Check Details

Version: 0.1.5
Check: examples
Result: ERROR Running examples in ‘SMDIC-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: exp2cell > ### Title: exp2cell > ### Aliases: exp2cell > > ### ** Examples > > #get breast cancer gene expression profile. > exp.example<-GetExampleData("exp.example") > > #perform the exp2cell method. Method must be one of "xCell","ssGSEA" and "CIBERSORT". > cellmatrix<-exp2cell(exp=exp.example,method="ssGSEA") #cell abundance matrix ℹ GSVA version 1.53.27 ! 659 genes with constant values throughout the samples Error in h(simpleError(msg, call)) : error in evaluating the argument 'object' in selecting a method for function 'GeneSetCollection': unable to find an inherited method for function ‘GeneSet’ for signature ‘type = "factor"’ Calls: exp2cell ... GeneSetCollection -> mapply -> <Anonymous> -> GeneSet -> <Anonymous> Execution halted Flavor: r-release-linux-x86_64

Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘SMDIC.Rmd’ using rmarkdown Quitting from lines 63-70 [unnamed-chunk-2] (SMDIC.Rmd) Error: processing vignette 'SMDIC.Rmd' failed with diagnostics: error in evaluating the argument 'object' in selecting a method for function 'GeneSetCollection': unable to find an inherited method for function 'GeneSet' for signature 'type = "factor"' --- failed re-building ‘SMDIC.Rmd’ SUMMARY: processing the following file failed: ‘SMDIC.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64

Version: 0.1.6
Check: package dependencies
Result: ERROR Package required but not available: ‘GSVA’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64