CRAN Package Check Results for Package SCpubr

Last updated on 2025-04-03 17:49:58 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	2.0.2	14.45	237.25	251.70	OK
r-devel-linux-x86_64-debian-gcc	2.0.2	8.61	156.27	164.88	OK
r-devel-linux-x86_64-fedora-clang	2.0.2			441.68	OK
r-devel-linux-x86_64-fedora-gcc	2.0.2			412.82	OK
r-devel-macos-arm64	2.0.2			114.00	ERROR
r-devel-macos-x86_64	2.0.2			116.00	OK
r-devel-windows-x86_64	2.0.2	14.00	241.00	255.00	OK
r-patched-linux-x86_64	2.0.2	16.87	230.63	247.50	OK
r-release-linux-x86_64	2.0.2	13.44	232.11	245.55	OK
r-release-macos-arm64	2.0.2			105.00	NOTE
r-release-macos-x86_64	2.0.2			176.00	OK
r-release-windows-x86_64	2.0.2	14.00	239.00	253.00	OK
r-oldrel-macos-arm64	2.0.2				NOTE
r-oldrel-macos-x86_64	2.0.2			355.00	NOTE
r-oldrel-windows-x86_64	2.0.2	17.00	316.00	333.00	OK

Check Details

Version: 2.0.2
Check: tests
Result: ERROR Running ‘testthat.R’ [9s/15s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # nolint start > library(testthat) > library(SCpubr) ── SCpubr 2.0.2 ──────────────────────────────────────────────────────────────── ℹ Have a look at extensive tutorials in SCpubr's book. ✔ If you use SCpubr in your research, please cite it accordingly. ★ If the package is useful to you, consider leaving a Star in the GitHub repository. ! Keep track of the package updates on Twitter (@Enblacar) or in the Official NEWS website. ♥ Happy plotting! ── Tips! ── ℹ To remove the white and black end from continuous palettes, use: options("SCpubr.ColorPaletteEnds" = FALSE) ✖ To suppress this startup message, use: suppressPackageStartupMessages(library(SCpubr)) ✖ Alternatively, you can also set the following option: options("SCpubr.verbose" = FALSE) And then load the package normally (and faster) as: library(SCpubr) ──────────────────────────────────────────────────────────────────────────────── > # nolint end > test_check("SCpubr") Error in `FUN()`: ! In path: "/Volumes/Builds/packages/big-sur-arm64/results/4.5/SCpubr.Rcheck/tests/testthat/setup.R" Caused by error in `dbFileConnect()`: ! DB file '' not found Backtrace: ▆ 1. ├─testthat::test_check("SCpubr") 2. │ └─testthat::test_dir(...) 3. │ └─testthat:::test_files(...) 4. │ └─testthat:::test_files_serial(...) 5. │ └─testthat:::test_files_setup_state(...) 6. │ └─testthat::source_test_setup(".", env) 7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE) 8. │ └─base::lapply(...) 9. │ └─testthat (local) FUN(X[[i]], ...) 10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap) 11. │ ├─base::withCallingHandlers(...) 12. │ └─base::eval(exprs, env) 13. │ └─base::eval(exprs, env) 14. │ └─AnnotationDbi::loadDb(...) at tests/testthat/setup.R:72:5 15. │ └─AnnotationDbi::dbFileConnect(file) 16. │ └─base::stop("DB file '", dbfile, "' not found") 17. └─base::.handleSimpleError(`<fn>`, "DB file '' not found", base::quote(dbFileConnect(file))) 18. └─testthat (local) h(simpleError(msg, call)) 19. └─rlang::abort(...) Execution halted Flavor: r-devel-macos-arm64

Version: 2.0.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'AUCell', 'infercnv', 'Nebulosa' Flavor: r-release-macos-arm64

Version: 2.0.2
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘infercnv’ Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 2.0.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'AUCell', 'decoupleR', 'infercnv', 'Nebulosa' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64