CRAN Package Check Results for Package SCORPIUS

Last updated on 2025-10-30 01:50:15 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0.9	13.37	291.43	304.80	NOTE
r-devel-linux-x86_64-debian-gcc	1.0.9	9.35	210.55	219.90	NOTE
r-devel-linux-x86_64-fedora-clang	1.0.9	92.00	391.00	483.00	NOTE
r-devel-linux-x86_64-fedora-gcc	1.0.9	56.00	445.21	501.21	NOTE
r-devel-windows-x86_64	1.0.9	14.00	247.00	261.00	NOTE
r-patched-linux-x86_64	1.0.9	12.89	229.36	242.25	ERROR
r-release-linux-x86_64	1.0.9	11.08	272.33	283.41	NOTE
r-release-macos-arm64	1.0.9	5.00	120.00	125.00	NOTE
r-release-macos-x86_64	1.0.9	11.00	226.00	237.00	NOTE
r-release-windows-x86_64	1.0.9	15.00	249.00	264.00	NOTE
r-oldrel-macos-arm64	1.0.9	6.00	108.00	114.00	NOTE
r-oldrel-macos-x86_64	1.0.9	13.00	177.00	190.00	NOTE
r-oldrel-windows-x86_64	1.0.9	20.00	319.00	339.00	NOTE

Check Details

Version: 1.0.9
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>, rcannood), Wouter Saelens [ctb] (<https://orcid.org/0000-0002-7114-6248>, zouter)’ Authors@R: ‘Robrecht Cannoodt [aut, cre] (ORCID: <https://orcid.org/0000-0003-3641-729X>, github: rcannood), Wouter Saelens [ctb] (ORCID: <https://orcid.org/0000-0002-7114-6248>, github: zouter)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.9
Check: Rd files
Result: NOTE checkRd: (-1) reduce_dimensionality.Rd:19: Lost braces 19 | \item{ndim}{the maximum dimension of the space which the data are to be represented in; must be in {1, 2, \ldots, n-1}.} | ^ checkRd: (-1) ti_scorpius.Rd:18: Lost braces; missing escapes or markup? 18 | \item{distance_method}{A character string indicating which correlationcoefficient (or covariance) is to be computed. One of "pearson", "spearman" (default), or "cosine". Domain: {spearman, pearson, cosine}. Default: spearman. Format: character.} | ^ checkRd: (-1) ti_scorpius.Rd:30: Lost braces; missing escapes or markup? 30 | \item{smoother}{\code{principal_curve} parameter; choice of smoother. Domain: {smooth_spline, lowess, periodic_lowess}. Default: smooth_spline. Format: character.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.9
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘anndata.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘anndata.Rmd’ --- re-building ‘ginhoux.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘ginhoux.Rmd’ --- re-building ‘simulated-data.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘simulated-data.Rmd’ --- re-building ‘singlecellexperiment.Rmd’ using rmarkdown Quitting from singlecellexperiment.Rmd:25-40 [load_data] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'SingleCellExperiment' --- Backtrace: ▆ 1. └─base::library(SingleCellExperiment) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'singlecellexperiment.Rmd' failed with diagnostics: there is no package called 'SingleCellExperiment' --- failed re-building ‘singlecellexperiment.Rmd’ SUMMARY: processing the following file failed: ‘singlecellexperiment.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64