Last updated on 2025-02-02 05:48:33 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.0 | 7.25 | 83.51 | 90.76 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.4.0 | 4.54 | 59.32 | 63.86 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.4.0 | 149.64 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4.0 | 154.65 | OK | |||
| r-devel-windows-x86_64 | 1.4.0 | 15.00 | 113.00 | 128.00 | OK | |
| r-patched-linux-x86_64 | 1.4.0 | 7.16 | 75.92 | 83.08 | OK | |
| r-release-linux-x86_64 | 1.4.0 | 7.06 | 76.30 | 83.36 | OK | |
| r-release-macos-arm64 | 1.4.0 | 60.00 | OK | |||
| r-release-macos-x86_64 | 1.4.0 | 102.00 | OK | |||
| r-release-windows-x86_64 | 1.4.0 | 14.00 | 113.00 | 127.00 | OK | |
| r-oldrel-macos-arm64 | 1.3 | 65.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.3 | 150.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.4.0 | 15.00 | 134.00 | 149.00 | OK |
Version: 1.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [17s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> require(testthat)
Loading required package: testthat
> require(Rdiagnosislist)
Loading required package: Rdiagnosislist
Loading required package: readxl
Attaching package: 'Rdiagnosislist'
The following object is masked from 'package:stats':
decompose
The following objects are masked from 'package:base':
intersect, setdiff, union
> require(bit64)
Loading required package: bit64
Loading required package: bit
Attaching package: 'bit'
The following object is masked from 'package:base':
xor
Attaching package bit64
package:bit64 (c) 2011-2017 Jens Oehlschlaegel
creators: integer64 runif64 seq :
coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bitstring
logical operator: ! & | xor != == < <= >= >
arithmetic operator: + - * / %/% %% ^
math: sign abs sqrt log log2 log10
math: floor ceiling trunc round
querying: is.integer64 is.vector [is.atomic} [length] format print str
values: is.na is.nan is.finite is.infinite
aggregation: any all min max range sum prod
cumulation: diff cummin cummax cumsum cumprod
access: length<- [ [<- [[ [[<-
combine: c rep cbind rbind as.data.frame
WARNING don't use as subscripts
WARNING semantics differ from integer
for more help type ?bit64
Attaching package: 'bit64'
The following object is masked from 'package:utils':
hashtab
The following objects are masked from 'package:base':
%in%, :, colSums, is.double, match, order, rank, rowSums
> require(data.table)
Loading required package: data.table
Attaching package: 'data.table'
The following object is masked from 'package:bit':
setattr
>
> test_check("Rdiagnosislist")
NAME NROW NCOL MB COLS
1: BODY 160 4 0 conceptId,term,laterality,multipart
2: BODY_LATERALITY 0 3 0 conceptId,laterality,nonlat_parentId
3: CAUSES 84 2 0 conceptId,term
4: FINDINGS 464 2 0 conceptId,term
5: LATERALITY 25 2 0 conceptId,term
6: MORPH 0 2 0 conceptId,term
7: OTHERCAUSE 36 3 0 conceptId,term,semType
8: OVERLAP 0 2 0 findingId,otherId
9: QUAL 2 2 0 conceptId,term
10: SEMTYPE 236 2 0 conceptId,semType
11: SEVERITY 0 2 0 conceptId,term
12: STAGE 0 2 0 conceptId,term
13: TRANSITIVE 5094 2 0 ancestorId,descendantId
KEY
1: term
2: conceptId
3: term
4: term
5: term
6: term
7: term
8: otherId
9: term
10: conceptId
11: term
12: term
13: descendantId
Total: 0MB using type_size
SNOMED CT tables loaded into environment:
NAME NROW NCOL MB
1: CONCEPT 509 5 0
2: DESCRIPTION 1596 9 0
3: EXTENDEDMAP 915 12 0
4: HISTORY 199 14 0
5: QUERY 1767 3 0
6: REFSET 428 5 0
7: RELATIONSHIP 1915 10 0
8: SIMPLEMAP 124 6 0
9: STATEDRELATIONSHIP 329 10 0
COLS
1: id,effectiveTime,active,moduleId,definitionStatusId
2: id,effectiveTime,active,moduleId,conceptId,languageCode,...
3: effectiveTime,active,moduleId,refsetId,referencedComponentId,mapGroup,...
4: OLDCONCEPTID,OLDCONCEPTSTATUS,NEWCONCEPTID,NEWCONCEPTSTATUS,PATH,ISAMBIGUOUS,...
5: supertypeId,subtypeId,provenance
6: effectiveTime,active,moduleId,refsetId,referencedComponentId
7: id,effectiveTime,active,moduleId,sourceId,destinationId,...
8: effectiveTime,active,moduleId,refsetId,referencedComponentId,mapTarget
9: id,effectiveTime,active,moduleId,sourceId,destinationId,...
KEY
1: id
2: id
3: mapPriority,mapCategoryId,refsetId,referencedComponentId
4: NEWCONCEPTID,OLDCONCEPTID
5: supertypeId,subtypeId
6: refsetId,referencedComponentId
7: sourceId,typeId,active
8: refsetId,mapTarget,referencedComponentId
9: sourceId,typeId,active
Total: 0MB using type_size
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'CONCEPT' not found
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'RELATIONSHIP' not found
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'SIMPLEMAP' not found
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'REFSET' not found
SNOMED CT tables loaded into environment:
NAME NROW NCOL MB
1: CONCEPT 509 5 0
2: DESCRIPTION 1596 9 0
3: EXTENDEDMAP 915 12 0
4: HISTORY 199 14 0
5: QUERY 1767 3 0
6: REFSET 428 5 0
7: RELATIONSHIP 1915 10 0
8: SIMPLEMAP 124 6 0
9: STATEDRELATIONSHIP 329 10 0
COLS
1: id,effectiveTime,active,moduleId,definitionStatusId
2: id,effectiveTime,active,moduleId,conceptId,languageCode,...
3: effectiveTime,active,moduleId,refsetId,referencedComponentId,mapGroup,...
4: OLDCONCEPTID,OLDCONCEPTSTATUS,NEWCONCEPTID,NEWCONCEPTSTATUS,PATH,ISAMBIGUOUS,...
5: supertypeId,subtypeId,provenance
6: effectiveTime,active,moduleId,refsetId,referencedComponentId
7: id,effectiveTime,active,moduleId,sourceId,destinationId,...
8: effectiveTime,active,moduleId,refsetId,referencedComponentId,mapTarget
9: id,effectiveTime,active,moduleId,sourceId,destinationId,...
KEY
1: id
2: id
3: mapPriority,mapCategoryId,refsetId,referencedComponentId
4: NEWCONCEPTID,OLDCONCEPTID
5: supertypeId,subtypeId
6: refsetId,referencedComponentId
7: sourceId,typeId,active
8: refsetId,mapTarget,referencedComponentId
9: sourceId,typeId,active
Total: 0MB using type_size
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'CONCEPT' not found
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'SIMPLEMAP' not found
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'REFSET' not found
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 131 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_loadSNOMED.R:17:2'): Test exporting and reloading sample SNOMED dictionary ──
TEST$DESCRIPTION not equal to TEST2$DESCRIPTION.
Attributes: < Component "index": Attributes: < Component "__conceptId__typeId__term__active": Attributes: < Component "maxgrpn": Mean relative difference: 1 > > >
Attributes: < Component "index": Attributes: < Component "__conceptId__typeId__term__active": Attributes: < Component "starts": Numeric: lengths (1596, 1595) differ > > >
Attributes: < Component "index": Attributes: < Component "__conceptId__typeId__term__active": Mean relative difference: 0.1006897 > >
Attributes: < Component "index": Attributes: < Component "__term__active": Attributes: < Component "starts": Numeric: lengths (1571, 1583) differ > > >
Attributes: < Component "index": Attributes: < Component "__term__active": Mean relative difference: 0.677056 > >
Attributes: < Component "index": Attributes: < Component "__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.6207289 > > >
Attributes: < Component "index": Attributes: < Component "__typeId__active": Attributes: < Component "starts": Numeric: lengths (4, 19) differ > > >
Attributes: < Component "index": Attributes: < Component "__typeId__active": Mean relative difference: 0.4855221 > >
── Failure ('test_loadSNOMED.R:18:2'): Test exporting and reloading sample SNOMED dictionary ──
TEST$RELATIONSHIP not equal to TEST2$RELATIONSHIP.
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.5 > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Attributes: < Component "starts": Numeric: lengths (1730, 1773) differ > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Mean relative difference: 0.001739979 > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.5352113 > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "starts": Numeric: lengths (474, 827) differ > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Mean relative difference: 0.4650144 > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.5 > > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Attributes: < Component "starts": Numeric: lengths (1730, 1773) differ > > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Mean relative difference: 0.001739979 > >
── Failure ('test_loadSNOMED.R:19:2'): Test exporting and reloading sample SNOMED dictionary ──
TEST$STATEDRELATIONSHIP not equal to TEST2$STATEDRELATIONSHIP.
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Mean relative difference: 0.0051563 > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.2 > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "starts": Numeric: lengths (132, 193) differ > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Mean relative difference: 0.167896 > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Mean relative difference: 0.0051563 > >
── Failure ('test_loadSNOMED.R:20:2'): Test exporting and reloading sample SNOMED dictionary ──
TEST$REFSET not equal to TEST2$REFSET.
Column 'active': 401 element mismatches
── Failure ('test_loadSNOMED.R:21:2'): Test exporting and reloading sample SNOMED dictionary ──
TEST$SIMPLEMAP not equal to TEST2$SIMPLEMAP.
Column 'active': 124 element mismatches
── Failure ('test_loadSNOMED.R:56:2'): Test exporting and reloading multiple files ──
TEST$DESCRIPTION not equal to TEST2$DESCRIPTION.
Attributes: < Component "index": Attributes: < Component "__conceptId__typeId__term__active": Attributes: < Component "maxgrpn": Mean relative difference: 1 > > >
Attributes: < Component "index": Attributes: < Component "__conceptId__typeId__term__active": Attributes: < Component "starts": Numeric: lengths (1596, 1595) differ > > >
Attributes: < Component "index": Attributes: < Component "__conceptId__typeId__term__active": Mean relative difference: 0.1006897 > >
Attributes: < Component "index": Attributes: < Component "__term__active": Attributes: < Component "starts": Numeric: lengths (1571, 1583) differ > > >
Attributes: < Component "index": Attributes: < Component "__term__active": Mean relative difference: 0.677056 > >
Attributes: < Component "index": Attributes: < Component "__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.6207289 > > >
Attributes: < Component "index": Attributes: < Component "__typeId__active": Attributes: < Component "starts": Numeric: lengths (4, 19) differ > > >
Attributes: < Component "index": Attributes: < Component "__typeId__active": Mean relative difference: 0.4855221 > >
── Failure ('test_loadSNOMED.R:57:2'): Test exporting and reloading multiple files ──
TEST$RELATIONSHIP not equal to TEST2$RELATIONSHIP.
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Attributes: < Component "starts": Numeric: lengths (1730, 1752) differ > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Mean relative difference: 0.002063746 > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.6760563 > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "starts": Numeric: lengths (474, 1072) differ > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Mean relative difference: 0.5414194 > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Attributes: < Component "starts": Numeric: lengths (1730, 1752) differ > > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Mean relative difference: 0.002063746 > >
── Failure ('test_loadSNOMED.R:58:2'): Test exporting and reloading multiple files ──
TEST$STATEDRELATIONSHIP not equal to TEST2$STATEDRELATIONSHIP.
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Mean relative difference: 0.006056371 > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.4666667 > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "starts": Numeric: lengths (132, 230) differ > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Mean relative difference: 0.1943718 > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Mean relative difference: 0.006056371 > >
── Failure ('test_loadSNOMED.R:59:2'): Test exporting and reloading multiple files ──
TEST$REFSET not equal to TEST2$REFSET.
Column 'active': 260 element mismatches
── Failure ('test_loadSNOMED.R:60:2'): Test exporting and reloading multiple files ──
TEST$SIMPLEMAP not equal to TEST2$SIMPLEMAP.
Column 'active': 124 element mismatches
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 131 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [12s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> require(testthat)
Loading required package: testthat
> require(Rdiagnosislist)
Loading required package: Rdiagnosislist
Loading required package: readxl
Attaching package: 'Rdiagnosislist'
The following object is masked from 'package:stats':
decompose
The following objects are masked from 'package:base':
intersect, setdiff, union
> require(bit64)
Loading required package: bit64
Loading required package: bit
Attaching package: 'bit'
The following object is masked from 'package:base':
xor
Attaching package bit64
package:bit64 (c) 2011-2017 Jens Oehlschlaegel
creators: integer64 runif64 seq :
coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bitstring
logical operator: ! & | xor != == < <= >= >
arithmetic operator: + - * / %/% %% ^
math: sign abs sqrt log log2 log10
math: floor ceiling trunc round
querying: is.integer64 is.vector [is.atomic} [length] format print str
values: is.na is.nan is.finite is.infinite
aggregation: any all min max range sum prod
cumulation: diff cummin cummax cumsum cumprod
access: length<- [ [<- [[ [[<-
combine: c rep cbind rbind as.data.frame
WARNING don't use as subscripts
WARNING semantics differ from integer
for more help type ?bit64
Attaching package: 'bit64'
The following object is masked from 'package:utils':
hashtab
The following objects are masked from 'package:base':
%in%, :, colSums, is.double, match, order, rank, rowSums
> require(data.table)
Loading required package: data.table
Attaching package: 'data.table'
The following object is masked from 'package:bit':
setattr
>
> test_check("Rdiagnosislist")
NAME NROW NCOL MB COLS
1: BODY 160 4 0 conceptId,term,laterality,multipart
2: BODY_LATERALITY 0 3 0 conceptId,laterality,nonlat_parentId
3: CAUSES 84 2 0 conceptId,term
4: FINDINGS 464 2 0 conceptId,term
5: LATERALITY 25 2 0 conceptId,term
6: MORPH 0 2 0 conceptId,term
7: OTHERCAUSE 36 3 0 conceptId,term,semType
8: OVERLAP 0 2 0 findingId,otherId
9: QUAL 2 2 0 conceptId,term
10: SEMTYPE 236 2 0 conceptId,semType
11: SEVERITY 0 2 0 conceptId,term
12: STAGE 0 2 0 conceptId,term
13: TRANSITIVE 5094 2 0 ancestorId,descendantId
KEY
1: term
2: conceptId
3: term
4: term
5: term
6: term
7: term
8: otherId
9: term
10: conceptId
11: term
12: term
13: descendantId
Total: 0MB using type_size
SNOMED CT tables loaded into environment:
NAME NROW NCOL MB
1: CONCEPT 509 5 0
2: DESCRIPTION 1596 9 0
3: EXTENDEDMAP 915 12 0
4: HISTORY 199 14 0
5: QUERY 1767 3 0
6: REFSET 428 5 0
7: RELATIONSHIP 1915 10 0
8: SIMPLEMAP 124 6 0
9: STATEDRELATIONSHIP 329 10 0
COLS
1: id,effectiveTime,active,moduleId,definitionStatusId
2: id,effectiveTime,active,moduleId,conceptId,languageCode,...
3: effectiveTime,active,moduleId,refsetId,referencedComponentId,mapGroup,...
4: OLDCONCEPTID,OLDCONCEPTSTATUS,NEWCONCEPTID,NEWCONCEPTSTATUS,PATH,ISAMBIGUOUS,...
5: supertypeId,subtypeId,provenance
6: effectiveTime,active,moduleId,refsetId,referencedComponentId
7: id,effectiveTime,active,moduleId,sourceId,destinationId,...
8: effectiveTime,active,moduleId,refsetId,referencedComponentId,mapTarget
9: id,effectiveTime,active,moduleId,sourceId,destinationId,...
KEY
1: id
2: id
3: mapPriority,mapCategoryId,refsetId,referencedComponentId
4: NEWCONCEPTID,OLDCONCEPTID
5: supertypeId,subtypeId
6: refsetId,referencedComponentId
7: sourceId,typeId,active
8: refsetId,mapTarget,referencedComponentId
9: sourceId,typeId,active
Total: 0MB using type_size
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'CONCEPT' not found
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'RELATIONSHIP' not found
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'SIMPLEMAP' not found
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'REFSET' not found
SNOMED CT tables loaded into environment:
NAME NROW NCOL MB
1: CONCEPT 509 5 0
2: DESCRIPTION 1596 9 0
3: EXTENDEDMAP 915 12 0
4: HISTORY 199 14 0
5: QUERY 1767 3 0
6: REFSET 428 5 0
7: RELATIONSHIP 1915 10 0
8: SIMPLEMAP 124 6 0
9: STATEDRELATIONSHIP 329 10 0
COLS
1: id,effectiveTime,active,moduleId,definitionStatusId
2: id,effectiveTime,active,moduleId,conceptId,languageCode,...
3: effectiveTime,active,moduleId,refsetId,referencedComponentId,mapGroup,...
4: OLDCONCEPTID,OLDCONCEPTSTATUS,NEWCONCEPTID,NEWCONCEPTSTATUS,PATH,ISAMBIGUOUS,...
5: supertypeId,subtypeId,provenance
6: effectiveTime,active,moduleId,refsetId,referencedComponentId
7: id,effectiveTime,active,moduleId,sourceId,destinationId,...
8: effectiveTime,active,moduleId,refsetId,referencedComponentId,mapTarget
9: id,effectiveTime,active,moduleId,sourceId,destinationId,...
KEY
1: id
2: id
3: mapPriority,mapCategoryId,refsetId,referencedComponentId
4: NEWCONCEPTID,OLDCONCEPTID
5: supertypeId,subtypeId
6: refsetId,referencedComponentId
7: sourceId,typeId,active
8: refsetId,mapTarget,referencedComponentId
9: sourceId,typeId,active
Total: 0MB using type_size
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'CONCEPT' not found
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'SIMPLEMAP' not found
Error in get(FILENAMES[thispattern == pattern]$table, envir = SNOMED, :
object 'REFSET' not found
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 131 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_loadSNOMED.R:17:2'): Test exporting and reloading sample SNOMED dictionary ──
TEST$DESCRIPTION not equal to TEST2$DESCRIPTION.
Attributes: < Component "index": Attributes: < Component "__conceptId__typeId__term__active": Attributes: < Component "maxgrpn": Mean relative difference: 1 > > >
Attributes: < Component "index": Attributes: < Component "__conceptId__typeId__term__active": Attributes: < Component "starts": Numeric: lengths (1596, 1595) differ > > >
Attributes: < Component "index": Attributes: < Component "__conceptId__typeId__term__active": Mean relative difference: 0.1006897 > >
Attributes: < Component "index": Attributes: < Component "__term__active": Attributes: < Component "starts": Numeric: lengths (1571, 1583) differ > > >
Attributes: < Component "index": Attributes: < Component "__term__active": Mean relative difference: 0.677056 > >
Attributes: < Component "index": Attributes: < Component "__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.6207289 > > >
Attributes: < Component "index": Attributes: < Component "__typeId__active": Attributes: < Component "starts": Numeric: lengths (4, 19) differ > > >
Attributes: < Component "index": Attributes: < Component "__typeId__active": Mean relative difference: 0.4855221 > >
── Failure ('test_loadSNOMED.R:18:2'): Test exporting and reloading sample SNOMED dictionary ──
TEST$RELATIONSHIP not equal to TEST2$RELATIONSHIP.
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.5 > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Attributes: < Component "starts": Numeric: lengths (1730, 1773) differ > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Mean relative difference: 0.001739979 > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.5352113 > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "starts": Numeric: lengths (474, 827) differ > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Mean relative difference: 0.4650144 > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.5 > > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Attributes: < Component "starts": Numeric: lengths (1730, 1773) differ > > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Mean relative difference: 0.001739979 > >
── Failure ('test_loadSNOMED.R:19:2'): Test exporting and reloading sample SNOMED dictionary ──
TEST$STATEDRELATIONSHIP not equal to TEST2$STATEDRELATIONSHIP.
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Mean relative difference: 0.006225308 > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.4333333 > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "starts": Numeric: lengths (132, 199) differ > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Mean relative difference: 0.2087406 > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Mean relative difference: 0.006225308 > >
── Failure ('test_loadSNOMED.R:20:2'): Test exporting and reloading sample SNOMED dictionary ──
TEST$REFSET not equal to TEST2$REFSET.
Column 'active': 427 element mismatches
── Failure ('test_loadSNOMED.R:21:2'): Test exporting and reloading sample SNOMED dictionary ──
TEST$SIMPLEMAP not equal to TEST2$SIMPLEMAP.
Column 'active': 124 element mismatches
── Failure ('test_loadSNOMED.R:56:2'): Test exporting and reloading multiple files ──
TEST$DESCRIPTION not equal to TEST2$DESCRIPTION.
Attributes: < Component "index": Attributes: < Component "__conceptId__typeId__term__active": Attributes: < Component "maxgrpn": Mean relative difference: 1 > > >
Attributes: < Component "index": Attributes: < Component "__conceptId__typeId__term__active": Attributes: < Component "starts": Numeric: lengths (1596, 1595) differ > > >
Attributes: < Component "index": Attributes: < Component "__conceptId__typeId__term__active": Mean relative difference: 0.1006897 > >
Attributes: < Component "index": Attributes: < Component "__term__active": Attributes: < Component "starts": Numeric: lengths (1571, 1583) differ > > >
Attributes: < Component "index": Attributes: < Component "__term__active": Mean relative difference: 0.677056 > >
Attributes: < Component "index": Attributes: < Component "__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.6207289 > > >
Attributes: < Component "index": Attributes: < Component "__typeId__active": Attributes: < Component "starts": Numeric: lengths (4, 19) differ > > >
Attributes: < Component "index": Attributes: < Component "__typeId__active": Mean relative difference: 0.4855221 > >
── Failure ('test_loadSNOMED.R:57:2'): Test exporting and reloading multiple files ──
TEST$RELATIONSHIP not equal to TEST2$RELATIONSHIP.
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.6428571 > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Attributes: < Component "starts": Numeric: lengths (1730, 1877) differ > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__sourceId__typeId__active": Mean relative difference: 0.001982537 > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.915493 > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "starts": Numeric: lengths (474, 1596) differ > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Mean relative difference: 0.3752516 > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.6428571 > > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Attributes: < Component "starts": Numeric: lengths (1730, 1877) differ > > >
Attributes: < Component "index": Attributes: < Component "__sourceId__destinationId__typeId__active": Mean relative difference: 0.001982537 > >
── Failure ('test_loadSNOMED.R:58:2'): Test exporting and reloading multiple files ──
TEST$STATEDRELATIONSHIP not equal to TEST2$STATEDRELATIONSHIP.
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "maxgrpn": Mean relative difference: 0.6666667 > > >
Attributes: < Component "index": Attributes: < Component "__destinationId__typeId__active": Attributes: < Component "starts": Numeric: lengths (132, 294) differ > > >
── Failure ('test_loadSNOMED.R:59:2'): Test exporting and reloading multiple files ──
TEST$REFSET not equal to TEST2$REFSET.
Column 'active': 245 element mismatches
── Failure ('test_loadSNOMED.R:60:2'): Test exporting and reloading multiple files ──
TEST$SIMPLEMAP not equal to TEST2$SIMPLEMAP.
Column 'active': 124 element mismatches
[ FAIL 10 | WARN 0 | SKIP 0 | PASS 131 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
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