CRAN Package Check Results for Package PoolTestR

Last updated on 2026-07-23 17:52:17 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.2.0	299.44	148.82	448.26	NOTE
r-devel-linux-x86_64-debian-gcc	0.2.0	299.05	134.45	433.50	NOTE
r-devel-linux-x86_64-fedora-clang	0.2.0	337.00	241.39	578.39	NOTE
r-devel-linux-x86_64-fedora-gcc	0.2.0	322.00	103.06	425.06	ERROR
r-devel-windows-x86_64	0.2.0	357.00	192.00	549.00	NOTE
r-patched-linux-x86_64	0.2.0	364.72	178.48	543.20	NOTE
r-release-linux-x86_64	0.2.0	362.13	175.91	538.04	NOTE
r-release-macos-arm64	0.2.0	65.00	-5.00	60.00	NOTE
r-release-macos-x86_64	0.2.0	208.00	128.00	336.00	NOTE
r-release-windows-x86_64	0.2.0	361.00	193.00	554.00	NOTE
r-oldrel-macos-arm64	0.2.0				NOTE
r-oldrel-macos-x86_64	0.2.0	195.00	28.00	223.00	NOTE
r-oldrel-windows-x86_64	0.2.0	471.00	253.00	724.00	NOTE

Check Details

Version: 0.2.0
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘getPrevalence.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.2.0
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘RcppParallel’ ‘rstantools’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.0
Check: examples
Result: ERROR Running examples in ‘PoolTestR-Ex.R’ failed The error most likely occurred in: > ### Name: PoolRegBayes > ### Title: Bayesian Mixed or Fixed Effect Logistic Regression with > ### Presence/Absence Tests on Pooled Samples > ### Aliases: PoolRegBayes > > ### ** Examples > > # Perform logistic-type regression modelling for a synthetic dataset consisting > # of pools (sizes 1, 5, or 10) taken from 4 different regions and 3 different > # years. Within each region specimens are collected at 4 different villages, > # and within each village specimens are collected at 8 different sites. > > > ### Models in a frequentist framework > #ignoring hierarchical sampling frame within each region > Mod <- PoolReg(Result ~ Region + Year, + data = SimpleExampleData, + poolSize = NumInPool) [1] "Model has no group/random effects. Using a fixed effect model (glm)" > summary(Mod) Call: stats::glm(formula = formula, family = stats::binomial(PoolLink(data[[poolSize]])), data = data) Coefficients: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.97190 0.12559 -15.701 < 2e-16 *** RegionB -1.20591 0.17890 -6.741 1.58e-11 *** RegionC -2.40943 0.27082 -8.897 < 2e-16 *** RegionD -0.11001 0.14466 -0.760 0.4470 Year -0.13874 0.07716 -1.798 0.0722 . --- Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 (Dispersion parameter for binomial family taken to be 1) Null deviance: 1304.34 on 1151 degrees of freedom Residual deviance: 990.58 on 1147 degrees of freedom AIC: 1000.6 Number of Fisher Scoring iterations: 6 > > #accounting hierarchical sampling frame within each region > HierMod <- PoolReg(Result ~ Region + Year + (1|Village) + (1|Site), + data = SimpleExampleData, + poolSize = NumInPool) [1] "Detected group/random effects. Using a mixed effect model (glmer)" Error: Downdated VtV is not positive definite Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc