CRAN Package Check Results for Package PhenotypeR

Last updated on 2025-08-01 17:50:32 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.6	4.75	413.69	418.44	OK
r-devel-linux-x86_64-debian-gcc	0.1.6	3.02	311.06	314.08	OK
r-devel-linux-x86_64-fedora-clang	0.2.0			842.47	OK
r-devel-linux-x86_64-fedora-gcc	0.2.0			881.39	OK
r-devel-windows-x86_64	0.1.6	7.00	229.00	236.00	OK
r-patched-linux-x86_64	0.1.6	4.56	389.11	393.67	OK
r-release-linux-x86_64	0.1.6	4.31	393.60	397.91	OK
r-release-macos-arm64	0.2.0			357.00	OK
r-release-macos-x86_64	0.2.0			314.00	ERROR
r-release-windows-x86_64	0.1.6	6.00	234.00	240.00	OK
r-oldrel-macos-arm64	0.2.0			367.00	NOTE
r-oldrel-macos-x86_64	0.2.0			331.00	ERROR
r-oldrel-windows-x86_64	0.2.0	9.00	480.00	489.00	NOTE

Check Details

Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘CodelistDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from CodelistDiagnostics.Rmd:28-56 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'CodelistDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpTYoe2N/synpuf-1k_5.3_1.3.duckdb": No space left on device --- failed re-building ‘CodelistDiagnostics.Rmd’ --- re-building ‘CohortDiagnostics.Rmd’ using rmarkdown --- finished re-building ‘CohortDiagnostics.Rmd’ --- re-building ‘DatabaseDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from DatabaseDiagnostics.Rmd:26-40 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'DatabaseDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpKeprHq/synpuf-1k_5.3_1.3.duckdb": No space left on device --- failed re-building ‘DatabaseDiagnostics.Rmd’ --- re-building ‘PhenotypeDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB --- finished re-building ‘PhenotypeDiagnostics.Rmd’ --- re-building ‘PhenotypeExpectations.Rmd’ using rmarkdown --- finished re-building ‘PhenotypeExpectations.Rmd’ --- re-building ‘PopulationDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from PopulationDiagnostics.Rmd:26-48 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'PopulationDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpYezXyM/synpuf-1k_5.3_1.3.duckdb": No space left on device --- failed re-building ‘PopulationDiagnostics.Rmd’ --- re-building ‘ShinyDiagnostics.Rmd’ using rmarkdown --- finished re-building ‘ShinyDiagnostics.Rmd’ SUMMARY: processing the following files failed: ‘CodelistDiagnostics.Rmd’ ‘DatabaseDiagnostics.Rmd’ ‘PopulationDiagnostics.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64

Version: 0.2.0
Check: installed package size
Result: NOTE installed size is 5.2Mb sub-directories of 1Mb or more: doc 4.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘CodelistDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from CodelistDiagnostics.Rmd:28-56 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'CodelistDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp2ZjuzL/synpuf-1k_5.3_1.3.duckdb": No space left on device --- failed re-building ‘CodelistDiagnostics.Rmd’ --- re-building ‘CohortDiagnostics.Rmd’ using rmarkdown --- finished re-building ‘CohortDiagnostics.Rmd’ --- re-building ‘DatabaseDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from DatabaseDiagnostics.Rmd:26-40 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'DatabaseDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpeNH2x9/synpuf-1k_5.3_1.3.duckdb": No space left on device --- failed re-building ‘DatabaseDiagnostics.Rmd’ --- re-building ‘PhenotypeDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB --- finished re-building ‘PhenotypeDiagnostics.Rmd’ --- re-building ‘PhenotypeExpectations.Rmd’ using rmarkdown --- finished re-building ‘PhenotypeExpectations.Rmd’ --- re-building ‘PopulationDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Quitting from PopulationDiagnostics.Rmd:26-48 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'PopulationDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/Rtmp15PPKO/synpuf-1k_5.3_1.3.duckdb": No space left on device --- failed re-building ‘PopulationDiagnostics.Rmd’ --- re-building ‘ShinyDiagnostics.Rmd’ using rmarkdown --- finished re-building ‘ShinyDiagnostics.Rmd’ SUMMARY: processing the following files failed: ‘CodelistDiagnostics.Rmd’ ‘DatabaseDiagnostics.Rmd’ ‘PopulationDiagnostics.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-x86_64