CRAN Package Check Results for Package PhenotypeR

Last updated on 2025-02-08 19:49:27 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.2	4.61	529.58	534.19	OK
r-devel-linux-x86_64-debian-gcc	0.1.2	3.26	421.84	425.10	OK
r-devel-linux-x86_64-fedora-clang	0.1.2			833.77	OK
r-devel-linux-x86_64-fedora-gcc	0.1.2			859.68	OK
r-devel-windows-x86_64	0.1.2	7.00	291.00	298.00	OK
r-patched-linux-x86_64	0.1.2	4.95	529.31	534.26	OK
r-release-linux-x86_64	0.1.1	4.36	654.38	658.74	OK
r-release-macos-arm64	0.1.2			407.00	ERROR
r-release-macos-x86_64	0.1.2			480.00	OK
r-release-windows-x86_64	0.1.2	8.00	317.00	325.00	OK
r-oldrel-macos-arm64	0.1.0			224.00	OK
r-oldrel-macos-x86_64	0.1.0			349.00	OK
r-oldrel-windows-x86_64	0.1.2	10.00	389.00	399.00	OK

Check Details

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘a01_DatabaseDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Warning in file(con, "w") : cannot open file 'a01_DatabaseDiagnostics.knit.md': No space left on device Error: processing vignette 'a01_DatabaseDiagnostics.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘a01_DatabaseDiagnostics.Rmd’ --- re-building ‘a02_CodelistDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Warning in file(con, "w") : cannot open file 'a02_CodelistDiagnostics.knit.md': No space left on device Error: processing vignette 'a02_CodelistDiagnostics.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘a02_CodelistDiagnostics.Rmd’ --- re-building ‘a03_CohortDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Warning in close.connection(con) : Problem closing connection: No space left on device Quitting from lines 36-61 [unnamed-chunk-3] (a03_CohortDiagnostics.Rmd) Error: processing vignette 'a03_CohortDiagnostics.Rmd' failed with diagnostics: rapi_execute: Failed to run query Error: IO Error: Could not write file "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpF3dqsj/synpuf-1k_5.3_1.1.duckdb": No space left on device --- failed re-building ‘a03_CohortDiagnostics.Rmd’ --- re-building ‘a04_MatchedDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB --- finished re-building ‘a04_MatchedDiagnostics.Rmd’ --- re-building ‘a05_PopulationDiagnostics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/synpuf-1k_5.3.zip' Content type 'application/zip' length 593048982 bytes (565.6 MB) ================================================== downloaded 565.6 MB Warning in file(con, "w") : cannot open file 'a05_PopulationDiagnostics.knit.md': No space left on device Error: processing vignette 'a05_PopulationDiagnostics.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘a05_PopulationDiagnostics.Rmd’ SUMMARY: processing the following files failed: ‘a01_DatabaseDiagnostics.Rmd’ ‘a02_CodelistDiagnostics.Rmd’ ‘a03_CohortDiagnostics.Rmd’ ‘a05_PopulationDiagnostics.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-arm64