CRAN Package Check Results for Package PGRdup

Last updated on 2025-12-11 07:49:47 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.2.3.9	9.48	134.18	143.66	NOTE
r-devel-linux-x86_64-debian-gcc	0.2.3.9	7.21	91.08	98.29	NOTE
r-devel-linux-x86_64-fedora-clang	0.2.3.9	43.00	179.76	222.76	NOTE
r-devel-linux-x86_64-fedora-gcc	0.2.3.9	20.00	196.19	216.19	NOTE
r-devel-windows-x86_64	0.2.3.9	14.00	152.00	166.00	NOTE
r-patched-linux-x86_64	0.2.3.9	9.45	72.05	81.50	ERROR
r-release-linux-x86_64	0.2.3.9	9.76	126.19	135.95	NOTE
r-release-macos-arm64	0.2.3.9				NOTE
r-release-macos-x86_64	0.2.3.9	10.00	106.00	116.00	NOTE
r-release-windows-x86_64	0.2.3.9	15.00	151.00	166.00	NOTE
r-oldrel-macos-arm64	0.2.3.9				NOTE
r-oldrel-macos-x86_64	0.2.3.9	8.00	83.00	91.00	NOTE
r-oldrel-windows-x86_64	0.2.3.9	19.00	171.00	190.00	NOTE

Check Details

Version: 0.2.3.9
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘J. Aravind [aut, cre] (<https://orcid.org/0000-0002-4791-442X>), J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], Rishi Kumar Tyagi [aut], ICAR-NBGPR [cph] (www.nbpgr.ernet.in), Maurice Aubrey [ctb] (Double Metaphone), Kevin Atkinson [ctb] (Double Metaphone), Lawrence Philips [ctb] (Double Metaphone)’ Authors@R: ‘J. Aravind [aut, cre] (ORCID: <https://orcid.org/0000-0002-4791-442X>), J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], Rishi Kumar Tyagi [aut], ICAR-NBGPR [cph] (url: www.nbpgr.ernet.in), Maurice Aubrey [ctb] (Double Metaphone), Kevin Atkinson [ctb] (Double Metaphone), Lawrence Philips [ctb] (Double Metaphone)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2.3.9
Check: Rd files
Result: NOTE checkRd: (-1) GN1000.Rd:8: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:8: Lost braces 8 | columns(fields): \itemize{ \item{CommonName}{ : }{Common name} | ^ checkRd: (-1) GN1000.Rd:9: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:9: Lost braces 9 | \item{BotanicalName}{ : }{Botanical name} \item{NationalID}{ : }{NBPGR | ^ checkRd: (-1) GN1000.Rd:9-10: Lost braces 9 | \item{BotanicalName}{ : }{Botanical name} \item{NationalID}{ : }{NBPGR | ^ checkRd: (-1) GN1000.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:10: Lost braces 10 | National identifier} \item{CollNo}{ : }{Collector number} \item{DonorID}{ : | ^ checkRd: (-1) GN1000.Rd:10-11: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:11: Lost braces 11 | }{Donor ID} \item{OtherID1}{ : }{Other ID field 1} \item{OtherID2}{ : | ^ checkRd: (-1) GN1000.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:11: Lost braces 11 | }{Donor ID} \item{OtherID1}{ : }{Other ID field 1} \item{OtherID2}{ : | ^ checkRd: (-1) GN1000.Rd:11-12: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:12: Lost braces 12 | }{Other ID field 2} \item{BioStatus}{ : }{Biological status} | ^ checkRd: (-1) GN1000.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:12: Lost braces 12 | }{Other ID field 2} \item{BioStatus}{ : }{Biological status} | ^ checkRd: (-1) GN1000.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) GN1000.Rd:13: Lost braces 13 | \item{SourceCountry}{ : }{Country of origin} \item{TransferYear}{ : }{Year | ^ checkRd: (-1) GN1000.Rd:13-14: Lost braces 13 | \item{SourceCountry}{ : }{Country of origin} \item{TransferYear}{ : }{Year | ^ checkRd: (-1) ReviewProbDup.Rd:35: Lost braces 35 | \item{insert.blanks}{logical. If \code{TRUE}, inserts a row of /code{NAs} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.2.3.9
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘J. Aravind <j.aravind@icar.gov.in>’ Found the following (possibly) invalid file URIs: URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf URI: filecf4485cd5a332.html From: inst/doc/Introduction.pdf Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.3.9
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Introduction.Rmd’ using rmarkdown_notangle Quitting from Introduction.Rmd:227-260 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `curl::curl_fetch_memory()`: ! Timeout was reached [cran.r-project.org]: Connection timed out after 10005 milliseconds --- Backtrace: x 1. +-httr::GET(link) 2. | \-httr:::request_perform(req, hu$handle$handle) 3. | +-httr:::request_fetch(req$output, req$url, handle) 4. | \-httr:::request_fetch.write_memory(req$output, req$url, handle) 5. | \-curl::curl_fetch_memory(url, handle = handle) 6. \-curl:::raise_libcurl_error(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Introduction.Rmd' failed with diagnostics: Timeout was reached [cran.r-project.org]: Connection timed out after 10005 milliseconds --- failed re-building ‘Introduction.Rmd’ SUMMARY: processing the following file failed: ‘Introduction.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64