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Last updated on 2026-06-14 05:50:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.2 | 21.68 | 388.96 | 410.64 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 15.03 | 235.50 | 250.53 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 39.00 | 638.58 | 677.58 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 36.00 | 608.56 | 644.56 | ERROR | |
| r-devel-windows-x86_64 | 0.1.2 | 25.00 | 324.00 | 349.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.2 | 21.60 | 361.53 | 383.13 | NOTE | |
| r-release-linux-x86_64 | 0.1.2 | 20.91 | 348.26 | 369.17 | ERROR | |
| r-release-macos-arm64 | 0.1.2 | 5.00 | 88.00 | 93.00 | NOTE | |
| r-release-macos-x86_64 | 0.1.2 | 15.00 | 365.00 | 380.00 | NOTE | |
| r-release-windows-x86_64 | 0.1.2 | 27.00 | 336.00 | 363.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.1.2 | NOTE | ||||
| r-oldrel-macos-x86_64 | 0.1.2 | 12.00 | 289.00 | 301.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.1.2 | 35.00 | 400.00 | 435.00 | NOTE |
Version: 0.1.2
Check: Rd files
Result: NOTE
checkRd: (-1) imput_cov.Rd:79: Lost braces
79 | \item van Buuren, S., Groothuis-Oudshoorn, K. (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1–67. url{https://www.jstatsoft.org/v45/i03/}
| ^
checkRd: (-1) indiv_grp_closest.Rd:47: Lost braces; missing escapes or markup?
47 | The function \code{indiv_grp_closest} is an intermediate function used in the implementation of an algorithm called {OUTCOME} (and its enrichment {R-OUTCOME}, see the reference (2) for more details) dedicated to the solving of recoding problems in data fusion using Optimal Transportation theory.
| ^
checkRd: (-1) indiv_grp_closest.Rd:47: Lost braces; missing escapes or markup?
47 | The function \code{indiv_grp_closest} is an intermediate function used in the implementation of an algorithm called {OUTCOME} (and its enrichment {R-OUTCOME}, see the reference (2) for more details) dedicated to the solving of recoding problems in data fusion using Optimal Transportation theory.
| ^
checkRd: (-1) merge_dbs.Rd:179: Lost braces
179 | \item van Buuren, S., Groothuis-Oudshoorn, K. (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1–67. url{https://www.jstatsoft.org/v45/i03/}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in ‘OTrecod-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: imput_cov
> ### Title: imput_cov()
> ### Aliases: imput_cov
>
> ### ** Examples
>
> # Imputation of all incomplete covariates in the table simu_data:
> data(simu_data)
>
> # Here we keep the complete variable "Gender" in the imputation model.
> # Using MICE (REP = 3):
> imput_mice <- imput_cov(simu_data,
+ indcol = 4:8, R_mice = 3,
+ meth = c("logreg", "polyreg", "polr", "logreg", "pmm")
+ )
> summary(imput_mice)
Length Class Mode
RAW 8 data.frame list
IMPUTE 1 -none- character
DATA_IMPUTE 5 data.frame list
MICE_IMPS 3 mild list
>
>
> # Using FAMD (NB_COMP = 3):
> imput_famd <- imput_cov(simu_data,
+ indcol = 4:8,
+ meth = c("logreg", "polyreg", "polr", "logreg", "pmm"),
+ missMDA = TRUE
+ )
Error in svd(A) : infinite or missing values in 'x'
Calls: imput_cov ... imputeMFA -> impute -> <Anonymous> -> <Anonymous> -> svd
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [27s/43s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(OTrecod)
>
> test_check("OTrecod")
Saving _problems/test-imput-cov-48.R
Saving _problems/test-merge_dbs-73.R
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 178 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-imput-cov.R:45:3'): famd works ─────────────────────────────────
Error in `svd(A)`: infinite or missing values in 'x'
Backtrace:
▆
1. └─OTrecod::imput_cov(...) at test-imput-cov.R:45:3
2. └─missMDA::imputeFAMD(datcov, ncp = NB_COMP, seed = seed_choice)
3. └─missMDA::imputeMFA(...)
4. └─missMDA (local) impute(...)
5. └─FactoMineR::svd.triplet(aux.base, row.w = row.w, ncp = 1)
6. └─irlba::irlba(X, nu = ncp, nv = ncp)
7. └─base::svd(A)
── Error ('test-merge_dbs.R:68:3'): the dimensions of the output objects are validated ──
Error in `svd(A)`: infinite or missing values in 'x'
Backtrace:
▆
1. └─OTrecod::merge_dbs(...) at test-merge_dbs.R:68:3
2. └─OTrecod::imput_cov(...)
3. └─missMDA::imputeFAMD(datcov, ncp = NB_COMP, seed = seed_choice)
4. └─missMDA::imputeMFA(...)
5. └─missMDA (local) impute(...)
6. └─FactoMineR::svd.triplet(aux.base, row.w = row.w, ncp = 1)
7. └─irlba::irlba(X, nu = ncp, nv = ncp)
8. └─base::svd(A)
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 178 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in ‘OTrecod-Ex.R’ failed
The error most likely occurred in:
> ### Name: imput_cov
> ### Title: imput_cov()
> ### Aliases: imput_cov
>
> ### ** Examples
>
> # Imputation of all incomplete covariates in the table simu_data:
> data(simu_data)
>
> # Here we keep the complete variable "Gender" in the imputation model.
> # Using MICE (REP = 3):
> imput_mice <- imput_cov(simu_data,
+ indcol = 4:8, R_mice = 3,
+ meth = c("logreg", "polyreg", "polr", "logreg", "pmm")
+ )
> summary(imput_mice)
Length Class Mode
RAW 8 data.frame list
IMPUTE 1 -none- character
DATA_IMPUTE 5 data.frame list
MICE_IMPS 3 mild list
>
>
> # Using FAMD (NB_COMP = 3):
> imput_famd <- imput_cov(simu_data,
+ indcol = 4:8,
+ meth = c("logreg", "polyreg", "polr", "logreg", "pmm"),
+ missMDA = TRUE
+ )
Error in svd(A) : infinite or missing values in 'x'
Calls: imput_cov ... imputeMFA -> impute -> <Anonymous> -> <Anonymous> -> svd
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [71s/159s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(OTrecod)
>
> test_check("OTrecod")
Saving _problems/test-imput-cov-48.R
Saving _problems/test-merge_dbs-73.R
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 178 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-imput-cov.R:45:3'): famd works ─────────────────────────────────
Error in `svd(A)`: infinite or missing values in 'x'
Backtrace:
▆
1. └─OTrecod::imput_cov(...) at test-imput-cov.R:45:3
2. └─missMDA::imputeFAMD(datcov, ncp = NB_COMP, seed = seed_choice)
3. └─missMDA::imputeMFA(...)
4. └─missMDA (local) impute(...)
5. └─FactoMineR::svd.triplet(aux.base, row.w = row.w, ncp = 1)
6. └─irlba::irlba(X, nu = ncp, nv = ncp)
7. └─base::svd(A)
── Error ('test-merge_dbs.R:68:3'): the dimensions of the output objects are validated ──
Error in `svd(A)`: infinite or missing values in 'x'
Backtrace:
▆
1. └─OTrecod::merge_dbs(...) at test-merge_dbs.R:68:3
2. └─OTrecod::imput_cov(...)
3. └─missMDA::imputeFAMD(datcov, ncp = NB_COMP, seed = seed_choice)
4. └─missMDA::imputeMFA(...)
5. └─missMDA (local) impute(...)
6. └─FactoMineR::svd.triplet(aux.base, row.w = row.w, ncp = 1)
7. └─irlba::irlba(X, nu = ncp, nv = ncp)
8. └─base::svd(A)
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 178 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [68s/82s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(OTrecod)
>
> test_check("OTrecod")
Saving _problems/test-imput-cov-48.R
Saving _problems/test-merge_dbs-73.R
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 178 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-imput-cov.R:45:3'): famd works ─────────────────────────────────
Error in `svd(A)`: infinite or missing values in 'x'
Backtrace:
▆
1. └─OTrecod::imput_cov(...) at test-imput-cov.R:45:3
2. └─missMDA::imputeFAMD(datcov, ncp = NB_COMP, seed = seed_choice)
3. └─missMDA::imputeMFA(...)
4. └─missMDA (local) impute(...)
5. └─FactoMineR::svd.triplet(aux.base, row.w = row.w, ncp = 1)
6. └─irlba::irlba(X, nu = ncp, nv = ncp)
7. └─base::svd(A)
── Error ('test-merge_dbs.R:68:3'): the dimensions of the output objects are validated ──
Error in `svd(A)`: infinite or missing values in 'x'
Backtrace:
▆
1. └─OTrecod::merge_dbs(...) at test-merge_dbs.R:68:3
2. └─OTrecod::imput_cov(...)
3. └─missMDA::imputeFAMD(datcov, ncp = NB_COMP, seed = seed_choice)
4. └─missMDA::imputeMFA(...)
5. └─missMDA (local) impute(...)
6. └─FactoMineR::svd.triplet(aux.base, row.w = row.w, ncp = 1)
7. └─irlba::irlba(X, nu = ncp, nv = ncp)
8. └─base::svd(A)
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 178 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.1.2
Check: tests
Result: ERROR
Running 'testthat.R' [35s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(OTrecod)
>
> test_check("OTrecod")
Saving _problems/test-imput-cov-48.R
Saving _problems/test-merge_dbs-73.R
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 178 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-imput-cov.R:45:3'): famd works ─────────────────────────────────
Error in `svd(A)`: infinite or missing values in 'x'
Backtrace:
▆
1. └─OTrecod::imput_cov(...) at test-imput-cov.R:45:3
2. └─missMDA::imputeFAMD(datcov, ncp = NB_COMP, seed = seed_choice)
3. └─missMDA::imputeMFA(...)
4. └─missMDA (local) impute(...)
5. └─FactoMineR::svd.triplet(aux.base, row.w = row.w, ncp = 1)
6. └─irlba::irlba(X, nu = ncp, nv = ncp)
7. └─base::svd(A)
── Error ('test-merge_dbs.R:68:3'): the dimensions of the output objects are validated ──
Error in `svd(A)`: infinite or missing values in 'x'
Backtrace:
▆
1. └─OTrecod::merge_dbs(...) at test-merge_dbs.R:68:3
2. └─OTrecod::imput_cov(...)
3. └─missMDA::imputeFAMD(datcov, ncp = NB_COMP, seed = seed_choice)
4. └─missMDA::imputeMFA(...)
5. └─missMDA (local) impute(...)
6. └─FactoMineR::svd.triplet(aux.base, row.w = row.w, ncp = 1)
7. └─irlba::irlba(X, nu = ncp, nv = ncp)
8. └─base::svd(A)
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 178 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [43s/74s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(OTrecod)
>
> test_check("OTrecod")
Saving _problems/test-imput-cov-48.R
Saving _problems/test-merge_dbs-73.R
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 178 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-imput-cov.R:45:3'): famd works ─────────────────────────────────
Error in `svd(A)`: infinite or missing values in 'x'
Backtrace:
▆
1. └─OTrecod::imput_cov(...) at test-imput-cov.R:45:3
2. └─missMDA::imputeFAMD(datcov, ncp = NB_COMP, seed = seed_choice)
3. └─missMDA::imputeMFA(...)
4. └─missMDA (local) impute(...)
5. └─FactoMineR::svd.triplet(aux.base, row.w = row.w, ncp = 1)
6. └─irlba::irlba(X, nu = ncp, nv = ncp)
7. └─base::svd(A)
── Error ('test-merge_dbs.R:68:3'): the dimensions of the output objects are validated ──
Error in `svd(A)`: infinite or missing values in 'x'
Backtrace:
▆
1. └─OTrecod::merge_dbs(...) at test-merge_dbs.R:68:3
2. └─OTrecod::imput_cov(...)
3. └─missMDA::imputeFAMD(datcov, ncp = NB_COMP, seed = seed_choice)
4. └─missMDA::imputeMFA(...)
5. └─missMDA (local) impute(...)
6. └─FactoMineR::svd.triplet(aux.base, row.w = row.w, ncp = 1)
7. └─irlba::irlba(X, nu = ncp, nv = ncp)
8. └─base::svd(A)
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 178 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
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