Last updated on 2024-08-16 21:49:06 CEST.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 2.0.3 | 14.18 | 124.46 | 138.64 | NOTE | |
r-devel-linux-x86_64-debian-gcc | 2.0.3 | 13.04 | 87.62 | 100.66 | NOTE | |
r-devel-linux-x86_64-fedora-clang | 2.0.3 | 242.97 | NOTE | |||
r-devel-linux-x86_64-fedora-gcc | 2.0.3 | 227.28 | NOTE | |||
r-devel-windows-x86_64 | 2.0.3 | 18.00 | 128.00 | 146.00 | NOTE | |
r-patched-linux-x86_64 | 2.0.3 | 16.69 | 115.94 | 132.63 | NOTE | |
r-release-linux-x86_64 | 2.0.3 | 16.83 | 116.63 | 133.46 | NOTE | |
r-release-macos-arm64 | 2.0.3 | 66.00 | NOTE | |||
r-release-macos-x86_64 | 2.0.3 | 98.00 | NOTE | |||
r-release-windows-x86_64 | 2.0.3 | 17.00 | 133.00 | 150.00 | NOTE | |
r-oldrel-macos-arm64 | 2.0.3 | 73.00 | NOTE | |||
r-oldrel-macos-x86_64 | 2.0.3 | 113.00 | NOTE | |||
r-oldrel-windows-x86_64 | 2.0.3 | 24.00 | 155.00 | 179.00 | NOTE |
Version: 2.0.3
Check: Rd files
Result: NOTE
checkRd: (-1) mPhen.defineOptions.Rd:4: Escaped LaTeX specials: \$
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.0.3
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘MultiPhen.Rnw’ using Sweave
Loading required package: MASS
Loading required package: abind
Loading required package: epitools
Loading required package: meta
Loading 'meta' package (version 6.2-1).
Type 'help(meta)' for a brief overview.
Readers of 'Meta-Analysis with R (Use R!)' should install
older version of 'meta' package: https://tinyurl.com/dt4y5drs
Warning in betasg/normg :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in betasg/normg :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in betasg/normg :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in plot.window(...) : "na.color" is not a graphical parameter
Warning in plot.window(...) : "dendrogram" is not a graphical parameter
Warning in plot.window(...) :
"density.info" is not a graphical parameter
Warning in plot.window(...) : "trace" is not a graphical parameter
Warning in plot.window(...) : "key" is not a graphical parameter
Warning in plot.window(...) : "symbreaks" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"na.color" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"dendrogram" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"density.info" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"trace" is not a graphical parameter
Warning in plot.xy(xy, type, ...) : "key" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"symbreaks" is not a graphical parameter
Warning in title(...) : "na.color" is not a graphical parameter
Warning in title(...) : "dendrogram" is not a graphical parameter
Warning in title(...) : "density.info" is not a graphical parameter
Warning in title(...) : "trace" is not a graphical parameter
Warning in title(...) : "key" is not a graphical parameter
Warning in title(...) : "symbreaks" is not a graphical parameter
Warning in plot.window(...) : "na.color" is not a graphical parameter
Warning in plot.window(...) : "dendrogram" is not a graphical parameter
Warning in plot.window(...) :
"density.info" is not a graphical parameter
Warning in plot.window(...) : "trace" is not a graphical parameter
Warning in plot.window(...) : "key" is not a graphical parameter
Warning in plot.window(...) : "symbreaks" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"na.color" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"dendrogram" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"density.info" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"trace" is not a graphical parameter
Warning in plot.xy(xy, type, ...) : "key" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"symbreaks" is not a graphical parameter
Warning in title(...) : "na.color" is not a graphical parameter
Warning in title(...) : "dendrogram" is not a graphical parameter
Warning in title(...) : "density.info" is not a graphical parameter
Warning in title(...) : "trace" is not a graphical parameter
Warning in title(...) : "key" is not a graphical parameter
Warning in title(...) : "symbreaks" is not a graphical parameter
Warning in .heatm(outC$beta, effPhe, logfun1, opts, TRUE, filek) :
unable to make heatmap resultsDir/resultsJoint.heatm.pdf all all beta
Warning in max(abs(as.vector(res[, snpinds, , 1]))[pvs < 0.05], na.rm = T) :
no non-missing arguments to max; returning -Inf
Warning in plot.window(...) : "na.color" is not a graphical parameter
Warning in plot.window(...) : "dendrogram" is not a graphical parameter
Warning in plot.window(...) :
"density.info" is not a graphical parameter
Warning in plot.window(...) : "trace" is not a graphical parameter
Warning in plot.window(...) : "key" is not a graphical parameter
Warning in plot.window(...) : "symbreaks" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"na.color" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"dendrogram" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"density.info" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"trace" is not a graphical parameter
Warning in plot.xy(xy, type, ...) : "key" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"symbreaks" is not a graphical parameter
Warning in title(...) : "na.color" is not a graphical parameter
Warning in title(...) : "dendrogram" is not a graphical parameter
Warning in title(...) : "density.info" is not a graphical parameter
Warning in title(...) : "trace" is not a graphical parameter
Warning in title(...) : "key" is not a graphical parameter
Warning in title(...) : "symbreaks" is not a graphical parameter
Warning in plot.window(...) : "na.color" is not a graphical parameter
Warning in plot.window(...) : "dendrogram" is not a graphical parameter
Warning in plot.window(...) :
"density.info" is not a graphical parameter
Warning in plot.window(...) : "trace" is not a graphical parameter
Warning in plot.window(...) : "key" is not a graphical parameter
Warning in plot.window(...) : "symbreaks" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"na.color" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"dendrogram" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"density.info" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"trace" is not a graphical parameter
Warning in plot.xy(xy, type, ...) : "key" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"symbreaks" is not a graphical parameter
Warning in title(...) : "na.color" is not a graphical parameter
Warning in title(...) : "dendrogram" is not a graphical parameter
Warning in title(...) : "density.info" is not a graphical parameter
Warning in title(...) : "trace" is not a graphical parameter
Warning in title(...) : "key" is not a graphical parameter
Warning in title(...) : "symbreaks" is not a graphical parameter
Warning in .heatm(outC$beta, effPhe, logfun1, opts, TRUE, filek) :
unable to make heatmap resultsDir/resultsBackwardSelection.heatm.pdf all all beta
Warning in plot.window(...) : "na.color" is not a graphical parameter
Warning in plot.window(...) : "dendrogram" is not a graphical parameter
Warning in plot.window(...) :
"density.info" is not a graphical parameter
Warning in plot.window(...) : "trace" is not a graphical parameter
Warning in plot.window(...) : "key" is not a graphical parameter
Warning in plot.window(...) : "symbreaks" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"na.color" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"dendrogram" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"density.info" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"trace" is not a graphical parameter
Warning in plot.xy(xy, type, ...) : "key" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"symbreaks" is not a graphical parameter
Warning in title(...) : "na.color" is not a graphical parameter
Warning in title(...) : "dendrogram" is not a graphical parameter
Warning in title(...) : "density.info" is not a graphical parameter
Warning in title(...) : "trace" is not a graphical parameter
Warning in title(...) : "key" is not a graphical parameter
Warning in title(...) : "symbreaks" is not a graphical parameter
Warning in plot.window(...) : "na.color" is not a graphical parameter
Warning in plot.window(...) : "dendrogram" is not a graphical parameter
Warning in plot.window(...) :
"density.info" is not a graphical parameter
Warning in plot.window(...) : "trace" is not a graphical parameter
Warning in plot.window(...) : "key" is not a graphical parameter
Warning in plot.window(...) : "symbreaks" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"na.color" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"dendrogram" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"density.info" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"trace" is not a graphical parameter
Warning in plot.xy(xy, type, ...) : "key" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"symbreaks" is not a graphical parameter
Warning in title(...) : "na.color" is not a graphical parameter
Warning in title(...) : "dendrogram" is not a graphical parameter
Warning in title(...) : "density.info" is not a graphical parameter
Warning in title(...) : "trace" is not a graphical parameter
Warning in title(...) : "key" is not a graphical parameter
Warning in title(...) : "symbreaks" is not a graphical parameter
Warning in .manhattan(topl, logfun, beta1 = NULL, paste(opts$mPhen.title, :
NAs introduced by coercion
Warning in plot.window(...) : "na.color" is not a graphical parameter
Warning in plot.window(...) : "dendrogram" is not a graphical parameter
Warning in plot.window(...) :
"density.info" is not a graphical parameter
Warning in plot.window(...) : "trace" is not a graphical parameter
Warning in plot.window(...) : "key" is not a graphical parameter
Warning in plot.window(...) : "symbreaks" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"na.color" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"dendrogram" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"density.info" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"trace" is not a graphical parameter
Warning in plot.xy(xy, type, ...) : "key" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"symbreaks" is not a graphical parameter
Warning in title(...) : "na.color" is not a graphical parameter
Warning in title(...) : "dendrogram" is not a graphical parameter
Warning in title(...) : "density.info" is not a graphical parameter
Warning in title(...) : "trace" is not a graphical parameter
Warning in title(...) : "key" is not a graphical parameter
Warning in title(...) : "symbreaks" is not a graphical parameter
Warning in plot.window(...) : "na.color" is not a graphical parameter
Warning in plot.window(...) : "dendrogram" is not a graphical parameter
Warning in plot.window(...) :
"density.info" is not a graphical parameter
Warning in plot.window(...) : "trace" is not a graphical parameter
Warning in plot.window(...) : "key" is not a graphical parameter
Warning in plot.window(...) : "symbreaks" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"na.color" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"dendrogram" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"density.info" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"trace" is not a graphical parameter
Warning in plot.xy(xy, type, ...) : "key" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"symbreaks" is not a graphical parameter
Warning in title(...) : "na.color" is not a graphical parameter
Warning in title(...) : "dendrogram" is not a graphical parameter
Warning in title(...) : "density.info" is not a graphical parameter
Warning in title(...) : "trace" is not a graphical parameter
Warning in title(...) : "key" is not a graphical parameter
Warning in title(...) : "symbreaks" is not a graphical parameter
Warning in betag/(betag %*% betag) :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Error: processing vignette 'MultiPhen.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'MultiPhen.tex' failed.
LaTeX errors:
! LaTeX Error: File `underscore.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.12 \usepackage
{Sweave}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘MultiPhen.Rnw’
SUMMARY: processing the following file failed:
‘MultiPhen.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.