Last updated on 2026-02-10 21:50:05 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.5.0 | ERROR | ||||
| r-devel-linux-x86_64-debian-gcc | 3.5.0 | 4.54 | 36.07 | 40.61 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 3.5.0 | 10.00 | 80.38 | 90.38 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 3.5.0 | 9.00 | 81.07 | 90.07 | ERROR | |
| r-devel-windows-x86_64 | 3.5.0 | 8.00 | 69.00 | 77.00 | ERROR | |
| r-patched-linux-x86_64 | 3.5.0 | 5.98 | 45.21 | 51.19 | ERROR | |
| r-release-linux-x86_64 | 3.5.0 | 3.38 | 45.63 | 49.01 | ERROR | |
| r-release-macos-arm64 | 3.5.0 | OK | ||||
| r-release-macos-x86_64 | 3.5.0 | 4.00 | 73.00 | 77.00 | OK | |
| r-release-windows-x86_64 | 3.5.0 | 8.00 | 72.00 | 80.00 | OK | |
| r-oldrel-macos-arm64 | 3.5.0 | OK | ||||
| r-oldrel-macos-x86_64 | 3.5.0 | 4.00 | 89.00 | 93.00 | OK | |
| r-oldrel-windows-x86_64 | 3.5.0 | 10.00 | 81.00 | 91.00 | ERROR |
Version: 3.5.0
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Michael Sovic [aut, ccp, cre] (<https://orcid.org/0000-0002-8556-3704>), Francesca Savona [res], Zuzana Bohrerova [res, fnd], Seth Faith [ccp, ctb] (0000-0002-0441-9859)’
Authors@R: ‘Michael Sovic [aut, ccp, cre] (ORCID: <https://orcid.org/0000-0002-8556-3704>), Francesca Savona [res], Zuzana Bohrerova [res, fnd], Seth Faith [ccp, ctb] (ORDIC: 0000-0002-0441-9859)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 3.5.0
Check: examples
Result: ERROR
Running examples in ‘MixviR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: create_ref
> ### Title: Create MixVir-formatted reference genome object
> ### Aliases: create_ref
> ### Keywords: reference
>
> ### ** Examples
>
> site1 <- "https://raw.githubusercontent.com/mikesovic/MixviR/main/raw_files/GCF_ASM985889v3.fa"
> site2 <- "https://raw.githubusercontent.com/mikesovic/MixviR/main/raw_files/sars_cov2_genes.bed"
>
> if (httr::http_error(site1) | httr::http_error(site2)) {
+ message("No internet connection or data source broken.")
+ return(NULL)
+ } else {
+ create_ref(
+ genome = site1,
+ feature.bed = site2,
+ code.num = "1")
+ }
Rows: 12 Columns: 6
── Column specification ────────────────────────────────────────────────────────
Delimiter: "\t"
chr (4): X1, X4, X5, X6
dbl (2): X2, X3
ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
trying URL 'https://raw.githubusercontent.com/mikesovic/MixviR/main/raw_files/GCF_ASM985889v3.fa'
Content type 'text/plain; charset=utf-8' length 30290 bytes (29 KB)
==================================================
downloaded 29 KB
Error in `dplyr::summarise()`:
ℹ In argument: `translation = translate_fwd(REF_BASE, code = code.num)`.
ℹ In group 1: `GENE = "E"`.
Caused by error:
! `translation` must be size 1, not 228.
ℹ To return more or less than 1 row per group, use `reframe()`.
Backtrace:
▆
1. ├─MixviR::create_ref(genome = site1, feature.bed = site2, code.num = "1")
2. │ └─... %>% dplyr::pull(translation)
3. ├─dplyr::pull(., translation)
4. ├─dplyr::arrange(., GENE, POS)
5. ├─dplyr::summarise(...)
6. ├─dplyr:::summarise.grouped_df(...)
7. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
8. │ └─base::withCallingHandlers(...)
9. ├─dplyr:::dplyr_internal_error(...)
10. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
11. │ └─rlang:::signal_abort(cnd, .file)
12. │ └─base::signalCondition(cnd)
13. └─dplyr (local) `<fn>`(`<dpl:::__>`)
14. └─dplyr (local) handler(cnd)
15. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 3.5.0
Check: examples
Result: ERROR
Running examples in ‘MixviR-Ex.R’ failed
The error most likely occurred in:
> ### Name: create_ref
> ### Title: Create MixVir-formatted reference genome object
> ### Aliases: create_ref
> ### Keywords: reference
>
> ### ** Examples
>
> site1 <- "https://raw.githubusercontent.com/mikesovic/MixviR/main/raw_files/GCF_ASM985889v3.fa"
> site2 <- "https://raw.githubusercontent.com/mikesovic/MixviR/main/raw_files/sars_cov2_genes.bed"
>
> if (httr::http_error(site1) | httr::http_error(site2)) {
+ message("No internet connection or data source broken.")
+ return(NULL)
+ } else {
+ create_ref(
+ genome = site1,
+ feature.bed = site2,
+ code.num = "1")
+ }
Rows: 12 Columns: 6
── Column specification ────────────────────────────────────────────────────────
Delimiter: "\t"
chr (4): X1, X4, X5, X6
dbl (2): X2, X3
ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
trying URL 'https://raw.githubusercontent.com/mikesovic/MixviR/main/raw_files/GCF_ASM985889v3.fa'
Content type 'text/plain; charset=utf-8' length 30290 bytes (29 KB)
==================================================
downloaded 29 KB
Error in `dplyr::summarise()`:
ℹ In argument: `translation = translate_fwd(REF_BASE, code = code.num)`.
ℹ In group 1: `GENE = "E"`.
Caused by error:
! `translation` must be size 1, not 228.
ℹ To return more or less than 1 row per group, use `reframe()`.
Backtrace:
▆
1. ├─MixviR::create_ref(genome = site1, feature.bed = site2, code.num = "1")
2. │ └─... %>% dplyr::pull(translation)
3. ├─dplyr::pull(., translation)
4. ├─dplyr::arrange(., GENE, POS)
5. ├─dplyr::summarise(...)
6. ├─dplyr:::summarise.grouped_df(...)
7. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
8. │ └─base::withCallingHandlers(...)
9. ├─dplyr:::dplyr_internal_error(...)
10. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
11. │ └─rlang:::signal_abort(cnd, .file)
12. │ └─base::signalCondition(cnd)
13. └─dplyr (local) `<fn>`(`<dpl:::__>`)
14. └─dplyr (local) handler(cnd)
15. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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