Last updated on 2025-12-04 09:49:59 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.2 | 5.46 | 67.53 | 72.99 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1.2 | 4.03 | 47.67 | 51.70 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.2 | 14.00 | 97.99 | 111.99 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.2 | 12.00 | 90.01 | 102.01 | ERROR | |
| r-devel-windows-x86_64 | 1.1.2 | 7.00 | 72.00 | 79.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1.2 | 4.69 | 60.31 | 65.00 | ERROR | |
| r-release-linux-x86_64 | 1.1.2 | 4.25 | 61.10 | 65.35 | ERROR | |
| r-release-macos-arm64 | 1.1.2 | OK | ||||
| r-release-macos-x86_64 | 1.1.2 | 4.00 | 46.00 | 50.00 | OK | |
| r-release-windows-x86_64 | 1.1.2 | 9.00 | 73.00 | 82.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1.2 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.1.2 | 3.00 | 42.00 | 45.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.1.2 | 9.00 | 91.00 | 100.00 | ERROR |
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [23s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
Saving _problems/test_load_metaphlan_assignment-14.R
Saving _problems/test_pipeline-37.R
Saving _problems/test_plot_bwa_assignment-31.R
Saving _problems/test_plot_diamond_assignment-31.R
Saving _problems/test_plot_gottcha_assignment-31.R
Saving _problems/test_plot_kraken_assignment-31.R
Saving _problems/test_plot_merged_assignment_b-80.R
Saving _problems/test_plot_merged_assignment_d-80.R
Saving _problems/test_plot_merged_assignment_g-78.R
Saving _problems/test_plot_merged_assignment_g2-78.R
Saving _problems/test_plot_merged_assignment_k-80.R
Saving _problems/test_plot_merged_assignment_m-80.R
Saving _problems/test_plot_merged_assignment_p-81.R
Saving _problems/test_plot_metaphlan_assignment-31.R
Saving _problems/test_plot_pangia_assignment-31.R
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
Error in `matches("LEVEL")`: could not find function "matches"
Backtrace:
▆
1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_pipeline.R:37:1
── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
Saving _problems/test_load_metaphlan_assignment-14.R
Saving _problems/test_pipeline-37.R
Saving _problems/test_plot_bwa_assignment-31.R
Saving _problems/test_plot_diamond_assignment-31.R
Saving _problems/test_plot_gottcha_assignment-31.R
Saving _problems/test_plot_kraken_assignment-31.R
Saving _problems/test_plot_merged_assignment_b-80.R
Saving _problems/test_plot_merged_assignment_d-80.R
Saving _problems/test_plot_merged_assignment_g-78.R
Saving _problems/test_plot_merged_assignment_g2-78.R
Saving _problems/test_plot_merged_assignment_k-80.R
Saving _problems/test_plot_merged_assignment_m-80.R
Saving _problems/test_plot_merged_assignment_p-81.R
Saving _problems/test_plot_metaphlan_assignment-31.R
Saving _problems/test_plot_pangia_assignment-31.R
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
Error in `matches("LEVEL")`: could not find function "matches"
Backtrace:
▆
1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_pipeline.R:37:1
── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [34s/45s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
Saving _problems/test_load_metaphlan_assignment-14.R
Saving _problems/test_pipeline-37.R
Saving _problems/test_plot_bwa_assignment-31.R
Saving _problems/test_plot_diamond_assignment-31.R
Saving _problems/test_plot_gottcha_assignment-31.R
Saving _problems/test_plot_kraken_assignment-31.R
Saving _problems/test_plot_merged_assignment_b-80.R
Saving _problems/test_plot_merged_assignment_d-80.R
Saving _problems/test_plot_merged_assignment_g-78.R
Saving _problems/test_plot_merged_assignment_g2-78.R
Saving _problems/test_plot_merged_assignment_k-80.R
Saving _problems/test_plot_merged_assignment_m-80.R
Saving _problems/test_plot_merged_assignment_p-81.R
Saving _problems/test_plot_metaphlan_assignment-31.R
Saving _problems/test_plot_pangia_assignment-31.R
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
Error in `matches("LEVEL")`: could not find function "matches"
Backtrace:
▆
1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_pipeline.R:37:1
── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [31s/36s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
Saving _problems/test_load_metaphlan_assignment-14.R
Saving _problems/test_pipeline-37.R
Saving _problems/test_plot_bwa_assignment-31.R
Saving _problems/test_plot_diamond_assignment-31.R
Saving _problems/test_plot_gottcha_assignment-31.R
Saving _problems/test_plot_kraken_assignment-31.R
Saving _problems/test_plot_merged_assignment_b-80.R
Saving _problems/test_plot_merged_assignment_d-80.R
Saving _problems/test_plot_merged_assignment_g-78.R
Saving _problems/test_plot_merged_assignment_g2-78.R
Saving _problems/test_plot_merged_assignment_k-80.R
Saving _problems/test_plot_merged_assignment_m-80.R
Saving _problems/test_plot_merged_assignment_p-81.R
Saving _problems/test_plot_metaphlan_assignment-31.R
Saving _problems/test_plot_pangia_assignment-31.R
[ FAIL 15 | WARN 18 | SKIP 0 | PASS 108 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
Error in `matches("LEVEL")`: could not find function "matches"
Backtrace:
▆
1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_pipeline.R:37:1
── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
[ FAIL 15 | WARN 18 | SKIP 0 | PASS 108 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.1.2
Check: tests
Result: ERROR
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
Saving _problems/test_load_metaphlan_assignment-14.R
Saving _problems/test_pipeline-37.R
Saving _problems/test_plot_bwa_assignment-31.R
Saving _problems/test_plot_diamond_assignment-31.R
Saving _problems/test_plot_gottcha_assignment-31.R
Saving _problems/test_plot_kraken_assignment-31.R
Saving _problems/test_plot_merged_assignment_b-80.R
Saving _problems/test_plot_merged_assignment_d-80.R
Saving _problems/test_plot_merged_assignment_g-78.R
Saving _problems/test_plot_merged_assignment_g2-78.R
Saving _problems/test_plot_merged_assignment_k-80.R
Saving _problems/test_plot_merged_assignment_m-80.R
Saving _problems/test_plot_merged_assignment_p-81.R
Saving _problems/test_plot_metaphlan_assignment-31.R
Saving _problems/test_plot_pangia_assignment-31.R
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
Error in `matches("LEVEL")`: could not find function "matches"
Backtrace:
▆
1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_pipeline.R:37:1
── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [20s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
Saving _problems/test_load_metaphlan_assignment-14.R
Saving _problems/test_pipeline-37.R
Saving _problems/test_plot_bwa_assignment-31.R
Saving _problems/test_plot_diamond_assignment-31.R
Saving _problems/test_plot_gottcha_assignment-31.R
Saving _problems/test_plot_kraken_assignment-31.R
Saving _problems/test_plot_merged_assignment_b-80.R
Saving _problems/test_plot_merged_assignment_d-80.R
Saving _problems/test_plot_merged_assignment_g-78.R
Saving _problems/test_plot_merged_assignment_g2-78.R
Saving _problems/test_plot_merged_assignment_k-80.R
Saving _problems/test_plot_merged_assignment_m-80.R
Saving _problems/test_plot_merged_assignment_p-81.R
Saving _problems/test_plot_metaphlan_assignment-31.R
Saving _problems/test_plot_pangia_assignment-31.R
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
Error in `matches("LEVEL")`: could not find function "matches"
Backtrace:
▆
1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_pipeline.R:37:1
── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [20s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
Saving _problems/test_load_metaphlan_assignment-14.R
Saving _problems/test_pipeline-37.R
Saving _problems/test_plot_bwa_assignment-31.R
Saving _problems/test_plot_diamond_assignment-31.R
Saving _problems/test_plot_gottcha_assignment-31.R
Saving _problems/test_plot_kraken_assignment-31.R
Saving _problems/test_plot_merged_assignment_b-80.R
Saving _problems/test_plot_merged_assignment_d-80.R
Saving _problems/test_plot_merged_assignment_g-78.R
Saving _problems/test_plot_merged_assignment_g2-78.R
Saving _problems/test_plot_merged_assignment_k-80.R
Saving _problems/test_plot_merged_assignment_m-80.R
Saving _problems/test_plot_merged_assignment_p-81.R
Saving _problems/test_plot_metaphlan_assignment-31.R
Saving _problems/test_plot_pangia_assignment-31.R
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
Error in `matches("LEVEL")`: could not find function "matches"
Backtrace:
▆
1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_pipeline.R:37:1
── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.1.2
Check: tests
Result: ERROR
Running 'testthat.R' [17s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
Saving _problems/test_load_metaphlan_assignment-14.R
Saving _problems/test_pipeline-37.R
Saving _problems/test_plot_bwa_assignment-31.R
Saving _problems/test_plot_diamond_assignment-31.R
Saving _problems/test_plot_gottcha_assignment-31.R
Saving _problems/test_plot_kraken_assignment-31.R
Saving _problems/test_plot_merged_assignment_b-80.R
Saving _problems/test_plot_merged_assignment_d-80.R
Saving _problems/test_plot_merged_assignment_g-78.R
Saving _problems/test_plot_merged_assignment_g2-78.R
Saving _problems/test_plot_merged_assignment_k-80.R
Saving _problems/test_plot_merged_assignment_m-80.R
Saving _problems/test_plot_merged_assignment_p-81.R
Saving _problems/test_plot_metaphlan_assignment-31.R
Saving _problems/test_plot_pangia_assignment-31.R
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
Error in `matches("LEVEL")`: could not find function "matches"
Backtrace:
▆
1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_pipeline.R:37:1
── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.1.2
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.1.2
Check: tests
Result: ERROR
Running 'testthat.R' [22s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
Saving _problems/test_load_metaphlan_assignment-14.R
Saving _problems/test_pipeline-37.R
Saving _problems/test_plot_bwa_assignment-31.R
Saving _problems/test_plot_diamond_assignment-31.R
Saving _problems/test_plot_gottcha_assignment-31.R
Saving _problems/test_plot_kraken_assignment-31.R
Saving _problems/test_plot_merged_assignment_b-80.R
Saving _problems/test_plot_merged_assignment_d-80.R
Saving _problems/test_plot_merged_assignment_g-78.R
Saving _problems/test_plot_merged_assignment_g2-78.R
Saving _problems/test_plot_merged_assignment_k-80.R
Saving _problems/test_plot_merged_assignment_m-80.R
Saving _problems/test_plot_merged_assignment_p-81.R
Saving _problems/test_plot_metaphlan_assignment-31.R
Saving _problems/test_plot_pangia_assignment-31.R
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──
Error in `matches("LEVEL")`: could not find function "matches"
Backtrace:
▆
1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1
── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_pipeline.R:37:1
── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1
── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1
── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1
── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1
── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1
── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1
── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1
── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1
── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1
── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1
── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1
── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1
── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──
Error in `is_true()`: could not find function "is_true"
Backtrace:
▆
1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1
[ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
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