CRAN Package Check Results for Package MSiP

Last updated on 2026-02-11 03:50:21 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.3.7				ERROR
r-devel-linux-x86_64-debian-gcc	1.3.7	13.41	96.84	110.25	ERROR
r-devel-linux-x86_64-fedora-clang	1.3.7	31.00	222.79	253.79	ERROR
r-devel-linux-x86_64-fedora-gcc	1.3.7	29.00	214.30	243.30	ERROR
r-devel-windows-x86_64	1.3.7	18.00	129.00	147.00	ERROR
r-patched-linux-x86_64	1.3.7	15.57	128.58	144.15	ERROR
r-release-linux-x86_64	1.3.7	15.54	127.43	142.97	ERROR
r-release-macos-arm64	1.3.7				OK
r-release-macos-x86_64	1.3.7	10.00	217.00	227.00	OK
r-release-windows-x86_64	1.3.7	18.00	225.00	243.00	OK
r-oldrel-macos-arm64	1.3.7				OK
r-oldrel-macos-x86_64	1.3.7	11.00	137.00	148.00	OK
r-oldrel-windows-x86_64	1.3.7	24.00	166.00	190.00	ERROR

Check Details

Version: 1.3.7
Check: examples
Result: ERROR Running examples in ‘MSiP-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: Weighted.matrixModel > ### Title: Weighted.matrixModel > ### Aliases: Weighted.matrixModel > > ### ** Examples > > data(SampleDatInput) > datScoring <- Weighted.matrixModel(SampleDatInput) Error: ! `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `across()` instead. Backtrace: ▆ 1. ├─MSiP::Weighted.matrixModel(SampleDatInput) 2. │ └─... %>% dplyr::select(-1) 3. ├─dplyr::select(., -1) 4. ├─base (local) set_rownames(., .$Experiment.id) 5. │ └─base::is.data.frame(x) 6. ├─base::as.data.frame(.) 7. └─dplyr::summarise_each(., funs(max(.))) 8. └─dplyr:::each_defunct("summarise_each()") 9. └─lifecycle::deprecate_stop(when = "0.7.0", what = fun, with = "across()") 10. └─lifecycle:::deprecate_stop0(msg) 11. └─rlang::cnd_signal(...) Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.3.7
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘MSiP_tutorial.Rmd’ using knitr Quitting from MSiP_tutorial.Rmd:45-49 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/lifecycle_error_deprecated> Error: ! `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `across()` instead. --- Backtrace: ▆ 1. ├─MSiP::diceCoefficient(SampleDatInput) 2. │ ├─base::suppressWarnings(...) 3. │ │ └─base::withCallingHandlers(...) 4. │ └─... %>% dplyr::select(-1) 5. ├─dplyr::select(., -1) 6. └─dplyr::summarise_each(., funs(max(.))) 7. └─dplyr:::each_defunct("summarise_each()") 8. └─lifecycle::deprecate_stop(when = "0.7.0", what = fun, with = "across()") 9. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MSiP_tutorial.Rmd' failed with diagnostics: `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `across()` instead. --- failed re-building ‘MSiP_tutorial.Rmd’ SUMMARY: processing the following file failed: ‘MSiP_tutorial.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.3.7
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘ranger’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3.7
Check: examples
Result: ERROR Running examples in ‘MSiP-Ex.R’ failed The error most likely occurred in: > ### Name: Weighted.matrixModel > ### Title: Weighted.matrixModel > ### Aliases: Weighted.matrixModel > > ### ** Examples > > data(SampleDatInput) > datScoring <- Weighted.matrixModel(SampleDatInput) Error: ! `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `across()` instead. Backtrace: ▆ 1. ├─MSiP::Weighted.matrixModel(SampleDatInput) 2. │ └─... %>% dplyr::select(-1) 3. ├─dplyr::select(., -1) 4. ├─base (local) set_rownames(., .$Experiment.id) 5. │ └─base::is.data.frame(x) 6. ├─base::as.data.frame(.) 7. └─dplyr::summarise_each(., funs(max(.))) 8. └─dplyr:::each_defunct("summarise_each()") 9. └─lifecycle::deprecate_stop(when = "0.7.0", what = fun, with = "across()") 10. └─lifecycle:::deprecate_stop0(msg) 11. └─rlang::cnd_signal(...) Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-windows-x86_64

Version: 1.3.7
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘MSiP_tutorial.Rmd’ using knitr Quitting from MSiP_tutorial.Rmd:45-49 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/lifecycle_error_deprecated> Error: ! `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `across()` instead. --- Backtrace: ▆ 1. ├─MSiP::diceCoefficient(SampleDatInput) 2. │ ├─base::suppressWarnings(...) 3. │ │ └─base::withCallingHandlers(...) 4. │ └─... %>% dplyr::select(-1) 5. ├─dplyr::select(., -1) 6. └─dplyr::summarise_each(., funs(max(.))) 7. └─dplyr:::each_defunct("summarise_each()") 8. └─lifecycle::deprecate_stop(when = "0.7.0", what = fun, with = "across()") 9. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MSiP_tutorial.Rmd' failed with diagnostics: `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `across()` instead. --- failed re-building ‘MSiP_tutorial.Rmd’ SUMMARY: processing the following file failed: ‘MSiP_tutorial.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-windows-x86_64