Last updated on 2024-12-22 08:50:07 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 923.00 | 204.85 | 1127.85 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 817.49 | 193.22 | 1010.71 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 1710.79 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 2557.79 | NOTE | |||
| r-devel-windows-x86_64 | 0.1.0 | 804.00 | 305.00 | 1109.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 1080.20 | 280.81 | 1361.01 | NOTE | |
| r-release-linux-x86_64 | 0.1.0 | 1077.95 | 285.75 | 1363.70 | NOTE | |
| r-release-macos-arm64 | 0.1.0 | 434.00 | NOTE | |||
| r-release-macos-x86_64 | 0.1.0 | 413.00 | NOTE | |||
| r-release-windows-x86_64 | 0.1.0 | 804.00 | 299.00 | 1103.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.1.0 | 447.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.1.0 | 708.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.1.0 | 1110.00 | 383.00 | 1493.00 | NOTE |
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [40s/47s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MIRES)
>
> test_check("MIRES")
[1] "no object returned"
[1] "no object returned"
Chain 1: ------------------------------------------------------------
Chain 1: EXPERIMENTAL ALGORITHM:
Chain 1: This procedure has not been thoroughly tested and may be unstable
Chain 1: or buggy. The interface is subject to change.
Chain 1: ------------------------------------------------------------
Chain 1:
Chain 1:
Chain 1:
Chain 1: Gradient evaluation took 0.025269 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 252.69 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Begin eta adaptation.
Chain 1: Iteration: 1 / 250 [ 0%] (Adaptation)
Chain 1: Iteration: 50 / 250 [ 20%] (Adaptation)
Chain 1: Iteration: 100 / 250 [ 40%] (Adaptation)
Chain 1: Iteration: 150 / 250 [ 60%] (Adaptation)
Chain 1: Iteration: 200 / 250 [ 80%] (Adaptation)
Chain 1: Success! Found best value [eta = 1] earlier than expected.
Chain 1:
Chain 1: Begin stochastic gradient ascent.
Chain 1: iter ELBO delta_ELBO_mean delta_ELBO_med notes
Chain 1: 100 -1499.252 1.000 1.000
Chain 1: 200 -1221.577 0.614 1.000 MEAN ELBO CONVERGED
Chain 1:
Chain 1: Drawing a sample of size 1000 from the approximate posterior...
Chain 1: COMPLETED.
SAMPLING FOR MODEL 'redifhm_all' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.0009 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 9 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
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Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.056 seconds (Warm-up)
Chain 1: 0.231 seconds (Sampling)
Chain 1: 0.287 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'redifhm_all' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000527 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 5.27 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
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Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.061 seconds (Warm-up)
Chain 1: 0.011 seconds (Sampling)
Chain 1: 0.072 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'redifhm_all' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.00053 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 5.3 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.06 seconds (Warm-up)
Chain 1: 0.084 seconds (Sampling)
Chain 1: 0.144 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'redifhm_all' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000483 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 4.83 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.087 seconds (Warm-up)
Chain 1: 0.25 seconds (Sampling)
Chain 1: 0.337 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'redifhm_all' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000422 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 4.22 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.28 seconds (Warm-up)
Chain 1: 0.443 seconds (Sampling)
Chain 1: 0.723 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'redifhm_all' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000432 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 4.32 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.215 seconds (Warm-up)
Chain 1: 0.518 seconds (Sampling)
Chain 1: 0.733 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'redifhm_all' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000395 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 3.95 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.487 seconds (Warm-up)
Chain 1: 0.258 seconds (Sampling)
Chain 1: 0.745 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'redifhm_all' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000405 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 4.05 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
Chain 1: Iteration: 10 / 10 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.466 seconds (Warm-up)
Chain 1: 0.41 seconds (Sampling)
Chain 1: 0.876 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'redifhm_all' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000371 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 3.71 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 7
Chain 1: adapt_window = 38
Chain 1: term_buffer = 5
Chain 1:
Chain 1: Iteration: 1 / 100 [ 1%] (Warmup)
Chain 1: Iteration: 10 / 100 [ 10%] (Warmup)
Chain 1: Iteration: 20 / 100 [ 20%] (Warmup)
Chain 1: Iteration: 30 / 100 [ 30%] (Warmup)
Chain 1: Iteration: 40 / 100 [ 40%] (Warmup)
Chain 1: Iteration: 50 / 100 [ 50%] (Warmup)
Chain 1: Iteration: 51 / 100 [ 51%] (Sampling)
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Chain 1: Iteration: 90 / 100 [ 90%] (Sampling)
Chain 1: Iteration: 100 / 100 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 8.218 seconds (Warm-up)
Chain 1: 7.269 seconds (Sampling)
Chain 1: 15.487 seconds (Total)
Chain 1:
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 93 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_density_funs.R:20:5'): posterior_density_funs_sigmas calls DP when needed. ──
Error in `validate_ll(log_ratios)`: All input values must be finite or -Inf.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test_density_funs.R:20:5
2. │ └─base::withCallingHandlers(...)
3. └─MIRES:::posterior_density_funs_sigmas(test_obj, tol_rel_obj = 1)
4. └─base::sapply(...)
5. └─base::lapply(X = X, FUN = FUN, ...)
6. └─MIRES (local) FUN(X[[i]], ...)
7. ├─rstan::vb(...)
8. └─rstan::vb(...)
9. └─rstan (local) .local(object, ...)
10. ├─base::suppressWarnings(loo::psis(lr, r_eff = 1))
11. │ └─base::withCallingHandlers(...)
12. ├─loo::psis(lr, r_eff = 1)
13. └─loo:::psis.default(lr, r_eff = 1)
14. └─loo:::importance_sampling.default(...)
15. └─loo:::importance_sampling.matrix(...)
16. └─loo:::validate_ll(log_ratios)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 93 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘pracma’ ‘rstantools’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.0
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.1.0
Check: installed package size
Result: NOTE
installed size is 164.3Mb
sub-directories of 1Mb or more:
libs 163.7Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.