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Last updated on 2026-07-21 23:58:24 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.1 | 23.21 | 453.23 | 476.44 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.1 | 16.71 | 300.21 | 316.92 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.1 | 44.00 | 697.83 | 741.83 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.1 | 17.00 | 291.49 | 308.49 | OK | |
| r-devel-windows-x86_64 | 0.2.1 | 26.00 | 398.00 | 424.00 | OK | |
| r-patched-linux-x86_64 | 0.2.1 | 22.64 | 422.79 | 445.43 | ERROR | |
| r-release-linux-x86_64 | 0.2.1 | 22.23 | 423.42 | 445.65 | OK | |
| r-release-macos-arm64 | 0.2.1 | 6.00 | 103.00 | 109.00 | OK | |
| r-release-macos-x86_64 | 0.2.1 | 17.00 | 383.00 | 400.00 | OK | |
| r-release-windows-x86_64 | 0.2.1 | 29.00 | 412.00 | 441.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.1 | 5.00 | 111.00 | 116.00 | OK | |
| r-oldrel-macos-x86_64 | 0.2.1 | 16.00 | 442.00 | 458.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.1 | 37.00 | 546.00 | 583.00 | OK |
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [169s/211s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do your testing?
> # - If you are developing a package, run your tests using covr::report(),
> # devtools::test(), or by pressing Ctrl/Cmd + Shift + T.
> # - If you are testing a script, run your tests using testthat::test_file()
>
> library(testthat)
> library(MAIHDA)
>
> test_check("MAIHDA")
── Intersectional interactions ─────────────────────────────────────────────────
4 of 9 strata flagged (95% interval).
Interaction reported on the link (latent) scale.
stratum label n interaction se lower upper p_value p_adjusted flagged
1 1 × 1 60 2.613 0.1245 2.369 2.857 8.752e-98 7.877e-97 TRUE
2 2 × 1 60 -2.608 0.1245 -2.852 -2.364 1.866e-97 8.398e-97 TRUE
5 2 × 2 60 2.568 0.1245 2.324 2.812 1.442e-94 4.326e-94 TRUE
4 1 × 2 60 -2.518 0.1245 -2.762 -2.274 5.585e-91 1.257e-90 TRUE
direction
above
below
above
below
Interaction BLUPs are shrunken (partially pooled) estimates; treat flags as
exploratory. See ?maihda_interactions.
── Intersectional interactions ─────────────────────────────────────────────────
3 of 3 strata flagged (95% interval).
Interaction reported on the link (latent) scale.
stratum label n interaction se lower upper p_value p_adjusted flagged
1 1 × 1 60 2.613 0.1245 2.369 2.857 8.752e-98 7.877e-97 TRUE
2 2 × 1 60 -2.608 0.1245 -2.852 -2.364 1.866e-97 8.398e-97 TRUE
5 2 × 2 60 2.568 0.1245 2.324 2.812 1.442e-94 4.326e-94 TRUE
direction
above
below
above
Interaction BLUPs are shrunken (partially pooled) estimates; treat flags as
exploratory. See ?maihda_interactions.
── Intersectional interactions ─────────────────────────────────────────────────
? of 9 strata flagged (95% interval).
Interaction reported on the link (latent) scale.
stratum label interaction
1 1 × 1 2.612662
2 2 × 1 -2.608177
5 2 × 2 2.568450
4 1 × 2 -2.518223
7 1 × 3 -0.094440
9 3 × 3 0.054712
6 3 × 2 -0.050227
8 2 × 3 0.039727
3 3 × 1 -0.004485
Interaction BLUPs are shrunken (partially pooled) estimates; treat flags as
exploratory. See ?maihda_interactions.
Intersectional interactions: 4 of 9 strata flagged (95% interval, no multiplicity correction)
strongest: 1 × 1 (+2.613, above)
uncorrected across 9 strata; maihda_interactions(x, adjust = "BH") for an FDR screen
── Intersectional interactions ─────────────────────────────────────────────────
4 of 9 strata flagged (95% interval; BH-adjusted p-values).
Model: adjusted (two-model); interaction on the link (latent) scale.
stratum label n interaction se lower upper p_value p_adjusted flagged
1 1 × 1 60 2.613 0.1245 2.369 2.857 8.752e-98 7.877e-97 TRUE
2 2 × 1 60 -2.608 0.1245 -2.852 -2.364 1.866e-97 8.398e-97 TRUE
5 2 × 2 60 2.568 0.1245 2.324 2.812 1.442e-94 4.326e-94 TRUE
direction
above
below
above
Interaction BLUPs are shrunken (partially pooled) estimates; treat flags as
exploratory. See ?maihda_interactions.
── Intersectional interactions ─────────────────────────────────────────────────
4 of 9 strata flagged (95% interval; BH-adjusted p-values).
Model: adjusted (two-model); interaction on the link (latent) scale.
stratum label n interaction se lower upper p_value p_adjusted flagged
1 1 × 1 60 2.613 0.1245 2.369 2.857 8.752e-98 7.877e-97 TRUE
2 2 × 1 60 -2.608 0.1245 -2.852 -2.364 1.866e-97 8.398e-97 TRUE
5 2 × 2 60 2.568 0.1245 2.324 2.812 1.442e-94 4.326e-94 TRUE
direction
above
below
above
Interaction BLUPs are shrunken (partially pooled) estimates; treat flags as
exploratory. See ?maihda_interactions.
── Intersectional interactions ─────────────────────────────────────────────────
4 of 9 strata flagged (95% interval; BH-adjusted p-values).
Model: adjusted (two-model); interaction on the link (latent) scale.
stratum label n interaction se lower upper p_value p_adjusted flagged
1 1 × 1 60 2.613 0.1245 2.369 2.857 8.752e-98 7.877e-97 TRUE
2 2 × 1 60 -2.608 0.1245 -2.852 -2.364 1.866e-97 8.398e-97 TRUE
5 2 × 2 60 2.568 0.1245 2.324 2.812 1.442e-94 4.326e-94 TRUE
4 1 × 2 60 -2.518 0.1245 -2.762 -2.274 5.585e-91 1.257e-90 TRUE
direction
above
below
above
below
Interaction BLUPs are shrunken (partially pooled) estimates; treat flags as
exploratory. See ?maihda_interactions.
── Intersectional interactions ─────────────────────────────────────────────────
? of 9 strata flagged (95% interval).
Interaction reported on the link (latent) scale.
stratum label interaction
1 1 × 1 2.612662
2 2 × 1 -2.608177
5 2 × 2 2.568450
4 1 × 2 -2.518223
7 1 × 3 -0.094440
9 3 × 3 0.054712
6 3 × 2 -0.050227
8 2 × 3 0.039727
3 3 × 1 -0.004485
Interaction BLUPs are shrunken (partially pooled) estimates; treat flags as
exploratory. See ?maihda_interactions.
Saving _problems/test-plot_upset-94.R
[ FAIL 1 | WARN 0 | SKIP 58 | PASS 1704 ]
══ Skipped tests (58) ══════════════════════════════════════════════════════════
• On CRAN (57): 'test-contextual.R:633:3', 'test-contextual.R:776:3',
'test-cross-classified.R:268:3', 'test-design-weights.R:266:3',
'test-design-weights.R:306:3', 'test-design-weights.R:326:3',
'test-design-weights.R:343:3', 'test-design-weights.R:364:3',
'test-design-weights.R:397:3', 'test-design-weights.R:423:3',
'test-design-weights.R:451:3', 'test-design-weights.R:472:3',
'test-design-weights.R:488:3', 'test-design-weights.R:517:3',
'test-design-weights.R:541:3', 'test-design-weights.R:557:3',
'test-design-weights.R:572:3', 'test-design-weights.R:591:3',
'test-design-weights.R:924:3', 'test-design-weights.R:983:3',
'test-discriminatory-accuracy.R:144:3',
'test-discriminatory-accuracy.R:226:3',
'test-discriminatory-accuracy.R:287:3',
'test-discriminatory-accuracy.R:394:3',
'test-discriminatory-accuracy.R:417:3',
'test-discriminatory-accuracy.R:438:3', 'test-fit_maihda.R:161:3',
'test-information_criteria.R:102:3', 'test-information_criteria.R:125:3',
'test-longitudinal.R:175:1', 'test-negbinomial.R:72:3',
'test-negbinomial.R:112:3', 'test-negbinomial.R:150:3',
'test-negbinomial.R:185:3', 'test-negbinomial.R:199:3',
'test-negbinomial.R:209:3', 'test-negbinomial.R:224:3',
'test-negbinomial.R:237:3', 'test-negbinomial.R:291:3',
'test-negbinomial.R:309:3', 'test-ordinal-engine.R:157:3',
'test-ordinal-engine.R:199:3', 'test-ordinal-engine.R:222:3',
'test-ordinal-engine.R:263:3', 'test-ordinal-engine.R:315:3',
'test-ordinal-engine.R:361:3', 'test-ordinal-engine.R:381:3',
'test-ordinal-engine.R:423:3', 'test-ordinal-engine.R:453:3',
'test-ordinal-engine.R:607:3', 'test-run_app.R:119:3',
'test-run_app.R:308:3', 'test-run_app.R:424:3',
'test-summary_variance.R:270:3', 'test-tidiers.R:148:3',
'test-weighted-count-vpc.R:32:3', 'test-weighted-count-vpc.R:80:3'
• brms Stan tests are opt-in; set MAIHDA_TEST_BRMS=true to run them (1):
'test-interactions.R:460:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-plot_upset.R:93:3'): plot.maihda_analysis dispatches type = 'upset' and forwards rope ──
<Rcpp::exception/C++Error/error/condition>
Error: Downdated VtV is not positive definite
Backtrace:
▆
1. └─MAIHDA::maihda(...) at test-plot_upset.R:93:3
2. └─MAIHDA (local) fit_maihda_fwd(...)
3. ├─base::do.call(fit_maihda, c(list(...), dots_eval))
4. └─MAIHDA (local) `<fn>`(...)
5. └─base::eval(fit_call, fit_env)
6. └─base::eval(fit_call, fit_env)
7. └─lme4::glmer(...)
8. └─lme4::optimizeGlmer(...)
9. └─lme4:::optwrap(...)
10. ├─base::withCallingHandlers(...)
11. ├─base::do.call(optfun, arglist)
12. └─lme4 (local) `<fn>`(...)
13. ├─nM$newf(fn(nM$xeval()))
14. │ └─base::stopifnot(length(value <- as.numeric(value)) == 1L)
15. └─lme4 (local) fn(nM$xeval())
16. └─lme4 (local) pwrssUpdate(...)
[ FAIL 1 | WARN 0 | SKIP 58 | PASS 1704 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
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