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CRAN Package Check Results for Package Eunomia

Last updated on 2026-10-15 05:58:38 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.0 5.11 56.30 61.41 ERROR
r-devel-linux-x86_64-debian-gcc 2.2.0 3.67 90.01 93.68 OK
r-devel-linux-x86_64-fedora-clang 2.2.0 4.00 74.79 78.79 OK
r-devel-linux-x86_64-fedora-gcc 2.2.0 4.00 85.74 89.74 OK
r-devel-windows-x86_64 2.1.0 9.00 73.00 82.00 ERROR
r-patched-linux-x86_64 2.2.0 5.16 147.03 152.19 OK
r-release-linux-x86_64 2.1.0 5.19 52.23 57.42 ERROR
r-release-macos-arm64 2.2.0 1.00 52.00 53.00 OK
r-release-macos-x86_64 2.2.0 4.00 337.00 341.00 OK
r-release-windows-x86_64 2.2.0 13.00 207.00 220.00 OK
r-oldrel-macos-arm64 2.2.0 2.00 71.00 73.00 OK
r-oldrel-macos-x86_64 2.2.0 4.00 253.00 257.00 OK
r-oldrel-windows-x86_64 2.2.0 12.00 224.00 236.00 OK

Check Details

Version: 2.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [10s/15s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(Eunomia) > test_check("Eunomia") trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB Saving _problems/test-DBI-2.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB Saving _problems/test-DBI-13.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/Synthea27Nj/Synthea27Nj_5.4.zip' Content type 'application/zip' length 3351707 bytes (3.2 MB) ================================================== downloaded 3.2 MB Saving _problems/test-EunomiaData-14.R adding: home/hornik/tmp/scratch/RtmpyKRRKT/file3be8c75ce48139somefile.txt (stored 0%) trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB Saving _problems/test-basic-9.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB Saving _problems/test-basic-17.R Saving _problems/test-basic-49.R Cohorts created in table main.cohort Saving _problems/test-basic-62.R Cohorts created in table main.cohort [ FAIL 7 | WARN 0 | SKIP 0 | PASS 54 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-DBI.R:2:3'): dbConnect works with sqlite ─────────────────────── Error: not an error Backtrace: ▆ 1. ├─DBI::dbConnect(...) at test-DBI.R:2:3 2. ├─DBI::dbConnect(...) 3. │ └─RSQLite (local) .local(drv, ...) 4. │ └─base::stopifnot(length(dbname) == 1, !is.na(dbname)) 5. └─Eunomia::getDatabaseFile(...) 6. └─Eunomia::extractLoadData(...) 7. └─Eunomia::loadDataFiles(...) 8. ├─DBI::dbExecute(conn = connection, statement = statement) 9. └─DBI::dbExecute(conn = connection, statement = statement) 10. ├─DBI::dbSendStatement(conn, statement, ...) 11. └─DBI::dbSendStatement(conn, statement, ...) 12. ├─DBI::dbSendQuery(conn, statement, ...) 13. └─RSQLite::dbSendQuery(conn, statement, ...) 14. └─RSQLite (local) .local(conn, statement, ...) 15. ├─methods::new(...) 16. │ ├─methods::initialize(value, ...) 17. │ └─methods::initialize(value, ...) 18. └─RSQLite:::result_create(conn@ptr, statement) ── Error ('test-DBI.R:13:3'): dbConnect works with duckdb ────────────────────── <duckdb_error/rlang_error/error/condition> Error in `dbSendQuery(conn, statement, ...)`: No statements to execute ℹ Context: rapi_prepare Backtrace: ▆ 1. ├─DBI::dbConnect(...) at test-DBI.R:13:3 2. ├─DBI::dbConnect(...) 3. │ └─duckdb (local) .local(drv, ...) 4. │ └─duckdb:::path_normalize(dbdir) 5. ├─Eunomia::getDatabaseFile(...) 6. │ └─Eunomia::extractLoadData(...) 7. │ └─Eunomia::loadDataFiles(...) 8. │ ├─DBI::dbExecute(conn = connection, statement = statement) 9. │ └─DBI::dbExecute(conn = connection, statement = statement) 10. │ ├─DBI::dbSendStatement(conn, statement, ...) 11. │ └─DBI::dbSendStatement(conn, statement, ...) 12. │ ├─DBI::dbSendQuery(conn, statement, ...) 13. │ └─duckdb::dbSendQuery(conn, statement, ...) 14. │ └─duckdb (local) .local(conn, statement, ...) 15. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env) 16. │ ├─rlang::try_fetch(...) 17. │ │ ├─base::tryCatch(...) 18. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 19. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 20. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 21. │ │ └─base::withCallingHandlers(...) 22. │ └─duckdb:::rapi_prepare(conn, query, env) 23. ├─duckdb (local) `<fn>`("rapi_prepare", "No statements to execute") 24. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields) 25. │ └─rlang:::signal_abort(cnd, .file) 26. │ └─base::signalCondition(cnd) 27. └─rlang (local) `<fn>`(`<dckdb_rr>`) 28. └─handlers[[1L]](cnd) 29. └─duckdb:::rethrow_error_from_rapi(e, call) 30. └─rlang::abort(msg, class = "duckdb_error", call = call, !!!fields) ── Error ('test-EunomiaData.R:14:3'): Eunomia works with 5.4 ─────────────────── Error: not an error Backtrace: ▆ 1. └─Eunomia::getDatabaseFile(...) at test-EunomiaData.R:14:3 2. └─Eunomia::extractLoadData(...) 3. └─Eunomia::loadDataFiles(...) 4. ├─DBI::dbExecute(conn = connection, statement = statement) 5. └─DBI::dbExecute(conn = connection, statement = statement) 6. ├─DBI::dbSendStatement(conn, statement, ...) 7. └─DBI::dbSendStatement(conn, statement, ...) 8. ├─DBI::dbSendQuery(conn, statement, ...) 9. └─RSQLite::dbSendQuery(conn, statement, ...) 10. └─RSQLite (local) .local(conn, statement, ...) 11. ├─methods::new(...) 12. │ ├─methods::initialize(value, ...) 13. │ └─methods::initialize(value, ...) 14. └─RSQLite:::result_create(conn@ptr, statement) ── Failure ('test-basic.R:9:3'): Dataset not downloaded and not loaded into SQLite ── `getDatabaseFile(datasetName = "GiBleed")` threw an error. Message: not an error Class: simpleError/error/condition Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-basic.R:9:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─Eunomia::getDatabaseFile(datasetName = "GiBleed") 7. └─Eunomia::extractLoadData(...) 8. └─Eunomia::loadDataFiles(...) 9. ├─DBI::dbExecute(conn = connection, statement = statement) 10. └─DBI::dbExecute(conn = connection, statement = statement) 11. ├─DBI::dbSendStatement(conn, statement, ...) 12. └─DBI::dbSendStatement(conn, statement, ...) 13. ├─DBI::dbSendQuery(conn, statement, ...) 14. └─RSQLite::dbSendQuery(conn, statement, ...) 15. └─RSQLite (local) .local(conn, statement, ...) 16. ├─methods::new(...) 17. │ ├─methods::initialize(value, ...) 18. │ └─methods::initialize(value, ...) 19. └─RSQLite:::result_create(conn@ptr, statement) ── Failure ('test-basic.R:17:3'): Dataset downloaded but not loaded into SQLite ── `getDatabaseFile(datasetName = "GiBleed")` threw an error. Message: not an error Class: simpleError/error/condition Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-basic.R:17:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─Eunomia::getDatabaseFile(datasetName = "GiBleed") 7. └─Eunomia::extractLoadData(...) 8. └─Eunomia::loadDataFiles(...) 9. ├─DBI::dbExecute(conn = connection, statement = statement) 10. └─DBI::dbExecute(conn = connection, statement = statement) 11. ├─DBI::dbSendStatement(conn, statement, ...) 12. └─DBI::dbSendStatement(conn, statement, ...) 13. ├─DBI::dbSendQuery(conn, statement, ...) 14. └─RSQLite::dbSendQuery(conn, statement, ...) 15. └─RSQLite (local) .local(conn, statement, ...) 16. ├─methods::new(...) 17. │ ├─methods::initialize(value, ...) 18. │ └─methods::initialize(value, ...) 19. └─RSQLite:::result_create(conn@ptr, statement) ── Failure ('test-basic.R:49:3'): Query ──────────────────────────────────────── Expected `personCount` > 0. Actual comparison: "0" <= "0" ── Failure ('test-basic.R:62:3'): Cohort construction ────────────────────────── Expected `cohortCount` > 0. Actual comparison: "0" <= "0" [ FAIL 7 | WARN 0 | SKIP 0 | PASS 54 ] Error: ! Test failures. Warning message: call dbDisconnect() when finished working with a connection Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.1.0
Check: tests
Result: ERROR Running 'testthat.R' [10s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(Eunomia) > test_check("Eunomia") trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB Saving _problems/test-DBI-2.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB Saving _problems/test-DBI-13.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/Synthea27Nj/Synthea27Nj_5.4.zip' Content type 'application/zip' length 3351707 bytes (3.2 MB) ================================================== downloaded 3.2 MB Saving _problems/test-EunomiaData-14.R adding: temp/2026_10_12_01_50_00_23142/RtmpY9ewJ6/file167c83d5018basomefile.txt (stored 0%) trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB Saving _problems/test-basic-9.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB Saving _problems/test-basic-17.R Saving _problems/test-basic-49.R Cohorts created in table main.cohort Saving _problems/test-basic-62.R Cohorts created in table main.cohort [ FAIL 7 | WARN 0 | SKIP 0 | PASS 54 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-DBI.R:2:3'): dbConnect works with sqlite ─────────────────────── Error: not an error Backtrace: ▆ 1. ├─DBI::dbConnect(...) at test-DBI.R:2:3 2. ├─DBI::dbConnect(...) 3. │ └─RSQLite (local) .local(drv, ...) 4. │ └─base::stopifnot(length(dbname) == 1, !is.na(dbname)) 5. └─Eunomia::getDatabaseFile(...) 6. └─Eunomia::extractLoadData(...) 7. └─Eunomia::loadDataFiles(...) 8. ├─DBI::dbExecute(conn = connection, statement = statement) 9. └─DBI::dbExecute(conn = connection, statement = statement) 10. ├─DBI::dbSendStatement(conn, statement, ...) 11. └─DBI::dbSendStatement(conn, statement, ...) 12. ├─DBI::dbSendQuery(conn, statement, ...) 13. └─RSQLite::dbSendQuery(conn, statement, ...) 14. └─RSQLite (local) .local(conn, statement, ...) 15. ├─methods::new(...) 16. │ ├─methods::initialize(value, ...) 17. │ └─methods::initialize(value, ...) 18. └─RSQLite:::result_create(conn@ptr, statement) ── Error ('test-DBI.R:13:3'): dbConnect works with duckdb ────────────────────── <duckdb_error/rlang_error/error/condition> Error in `dbSendQuery(conn, statement, ...)`: No statements to execute ℹ Context: rapi_prepare Backtrace: ▆ 1. ├─DBI::dbConnect(...) at test-DBI.R:13:3 2. ├─DBI::dbConnect(...) 3. │ └─duckdb (local) .local(drv, ...) 4. │ └─duckdb:::path_normalize(dbdir) 5. ├─Eunomia::getDatabaseFile(...) 6. │ └─Eunomia::extractLoadData(...) 7. │ └─Eunomia::loadDataFiles(...) 8. │ ├─DBI::dbExecute(conn = connection, statement = statement) 9. │ └─DBI::dbExecute(conn = connection, statement = statement) 10. │ ├─DBI::dbSendStatement(conn, statement, ...) 11. │ └─DBI::dbSendStatement(conn, statement, ...) 12. │ ├─DBI::dbSendQuery(conn, statement, ...) 13. │ └─duckdb::dbSendQuery(conn, statement, ...) 14. │ └─duckdb (local) .local(conn, statement, ...) 15. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env) 16. │ ├─rlang::try_fetch(...) 17. │ │ ├─base::tryCatch(...) 18. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 19. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 20. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 21. │ │ └─base::withCallingHandlers(...) 22. │ └─duckdb:::rapi_prepare(conn, query, env) 23. ├─duckdb (local) `<fn>`("rapi_prepare", "No statements to execute") 24. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields) 25. │ └─rlang:::signal_abort(cnd, .file) 26. │ └─base::signalCondition(cnd) 27. └─rlang (local) `<fn>`(`<dckdb_rr>`) 28. └─handlers[[1L]](cnd) 29. └─duckdb:::rethrow_error_from_rapi(e, call) 30. └─rlang::abort(msg, class = "duckdb_error", call = call, !!!fields) ── Error ('test-EunomiaData.R:14:3'): Eunomia works with 5.4 ─────────────────── Error: not an error Backtrace: ▆ 1. └─Eunomia::getDatabaseFile(...) at test-EunomiaData.R:14:3 2. └─Eunomia::extractLoadData(...) 3. └─Eunomia::loadDataFiles(...) 4. ├─DBI::dbExecute(conn = connection, statement = statement) 5. └─DBI::dbExecute(conn = connection, statement = statement) 6. ├─DBI::dbSendStatement(conn, statement, ...) 7. └─DBI::dbSendStatement(conn, statement, ...) 8. ├─DBI::dbSendQuery(conn, statement, ...) 9. └─RSQLite::dbSendQuery(conn, statement, ...) 10. └─RSQLite (local) .local(conn, statement, ...) 11. ├─methods::new(...) 12. │ ├─methods::initialize(value, ...) 13. │ └─methods::initialize(value, ...) 14. └─RSQLite:::result_create(conn@ptr, statement) ── Failure ('test-basic.R:9:3'): Dataset not downloaded and not loaded into SQLite ── `getDatabaseFile(datasetName = "GiBleed")` threw an error. Message: not an error Class: simpleError/error/condition Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-basic.R:9:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─Eunomia::getDatabaseFile(datasetName = "GiBleed") 7. └─Eunomia::extractLoadData(...) 8. └─Eunomia::loadDataFiles(...) 9. ├─DBI::dbExecute(conn = connection, statement = statement) 10. └─DBI::dbExecute(conn = connection, statement = statement) 11. ├─DBI::dbSendStatement(conn, statement, ...) 12. └─DBI::dbSendStatement(conn, statement, ...) 13. ├─DBI::dbSendQuery(conn, statement, ...) 14. └─RSQLite::dbSendQuery(conn, statement, ...) 15. └─RSQLite (local) .local(conn, statement, ...) 16. ├─methods::new(...) 17. │ ├─methods::initialize(value, ...) 18. │ └─methods::initialize(value, ...) 19. └─RSQLite:::result_create(conn@ptr, statement) ── Failure ('test-basic.R:17:3'): Dataset downloaded but not loaded into SQLite ── `getDatabaseFile(datasetName = "GiBleed")` threw an error. Message: not an error Class: simpleError/error/condition Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-basic.R:17:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─Eunomia::getDatabaseFile(datasetName = "GiBleed") 7. └─Eunomia::extractLoadData(...) 8. └─Eunomia::loadDataFiles(...) 9. ├─DBI::dbExecute(conn = connection, statement = statement) 10. └─DBI::dbExecute(conn = connection, statement = statement) 11. ├─DBI::dbSendStatement(conn, statement, ...) 12. └─DBI::dbSendStatement(conn, statement, ...) 13. ├─DBI::dbSendQuery(conn, statement, ...) 14. └─RSQLite::dbSendQuery(conn, statement, ...) 15. └─RSQLite (local) .local(conn, statement, ...) 16. ├─methods::new(...) 17. │ ├─methods::initialize(value, ...) 18. │ └─methods::initialize(value, ...) 19. └─RSQLite:::result_create(conn@ptr, statement) ── Failure ('test-basic.R:49:3'): Query ──────────────────────────────────────── Expected `personCount` > 0. Actual comparison: "0" <= "0" ── Failure ('test-basic.R:62:3'): Cohort construction ────────────────────────── Expected `cohortCount` > 0. Actual comparison: "0" <= "0" [ FAIL 7 | WARN 0 | SKIP 0 | PASS 54 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 2.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [10s/15s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(Eunomia) > test_check("Eunomia") trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB Saving _problems/test-DBI-2.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB Saving _problems/test-DBI-13.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/Synthea27Nj/Synthea27Nj_5.4.zip' Content type 'application/zip' length 3351707 bytes (3.2 MB) ================================================== downloaded 3.2 MB Saving _problems/test-EunomiaData-14.R adding: home/hornik/tmp/scratch/RtmprG9Fa0/filef356479ffaeffsomefile.txt (stored 0%) trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB Saving _problems/test-basic-9.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Content type 'application/zip' length 6861852 bytes (6.5 MB) ================================================== downloaded 6.5 MB Saving _problems/test-basic-17.R Saving _problems/test-basic-49.R Cohorts created in table main.cohort Saving _problems/test-basic-62.R Cohorts created in table main.cohort [ FAIL 7 | WARN 0 | SKIP 0 | PASS 54 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-DBI.R:2:3'): dbConnect works with sqlite ─────────────────────── Error: not an error Backtrace: ▆ 1. ├─DBI::dbConnect(...) at test-DBI.R:2:3 2. ├─DBI::dbConnect(...) 3. │ └─RSQLite (local) .local(drv, ...) 4. │ └─base::stopifnot(length(dbname) == 1, !is.na(dbname)) 5. └─Eunomia::getDatabaseFile(...) 6. └─Eunomia::extractLoadData(...) 7. └─Eunomia::loadDataFiles(...) 8. ├─DBI::dbExecute(conn = connection, statement = statement) 9. └─DBI::dbExecute(conn = connection, statement = statement) 10. ├─DBI::dbSendStatement(conn, statement, ...) 11. └─DBI::dbSendStatement(conn, statement, ...) 12. ├─DBI::dbSendQuery(conn, statement, ...) 13. └─RSQLite::dbSendQuery(conn, statement, ...) 14. └─RSQLite (local) .local(conn, statement, ...) 15. ├─methods::new(...) 16. │ ├─methods::initialize(value, ...) 17. │ └─methods::initialize(value, ...) 18. └─RSQLite:::result_create(conn@ptr, statement) ── Error ('test-DBI.R:13:3'): dbConnect works with duckdb ────────────────────── <duckdb_error/rlang_error/error/condition> Error in `dbSendQuery(conn, statement, ...)`: No statements to execute ℹ Context: rapi_prepare Backtrace: ▆ 1. ├─DBI::dbConnect(...) at test-DBI.R:13:3 2. ├─DBI::dbConnect(...) 3. │ └─duckdb (local) .local(drv, ...) 4. │ └─duckdb:::path_normalize(dbdir) 5. ├─Eunomia::getDatabaseFile(...) 6. │ └─Eunomia::extractLoadData(...) 7. │ └─Eunomia::loadDataFiles(...) 8. │ ├─DBI::dbExecute(conn = connection, statement = statement) 9. │ └─DBI::dbExecute(conn = connection, statement = statement) 10. │ ├─DBI::dbSendStatement(conn, statement, ...) 11. │ └─DBI::dbSendStatement(conn, statement, ...) 12. │ ├─DBI::dbSendQuery(conn, statement, ...) 13. │ └─duckdb::dbSendQuery(conn, statement, ...) 14. │ └─duckdb (local) .local(conn, statement, ...) 15. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env) 16. │ ├─rlang::try_fetch(...) 17. │ │ ├─base::tryCatch(...) 18. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 19. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 20. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 21. │ │ └─base::withCallingHandlers(...) 22. │ └─duckdb:::rapi_prepare(conn, query, env) 23. ├─duckdb (local) `<fn>`("rapi_prepare", "No statements to execute") 24. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields) 25. │ └─rlang:::signal_abort(cnd, .file) 26. │ └─base::signalCondition(cnd) 27. └─rlang (local) `<fn>`(`<dckdb_rr>`) 28. └─handlers[[1L]](cnd) 29. └─duckdb:::rethrow_error_from_rapi(e, call) 30. └─rlang::abort(msg, class = "duckdb_error", call = call, !!!fields) ── Error ('test-EunomiaData.R:14:3'): Eunomia works with 5.4 ─────────────────── Error: not an error Backtrace: ▆ 1. └─Eunomia::getDatabaseFile(...) at test-EunomiaData.R:14:3 2. └─Eunomia::extractLoadData(...) 3. └─Eunomia::loadDataFiles(...) 4. ├─DBI::dbExecute(conn = connection, statement = statement) 5. └─DBI::dbExecute(conn = connection, statement = statement) 6. ├─DBI::dbSendStatement(conn, statement, ...) 7. └─DBI::dbSendStatement(conn, statement, ...) 8. ├─DBI::dbSendQuery(conn, statement, ...) 9. └─RSQLite::dbSendQuery(conn, statement, ...) 10. └─RSQLite (local) .local(conn, statement, ...) 11. ├─methods::new(...) 12. │ ├─methods::initialize(value, ...) 13. │ └─methods::initialize(value, ...) 14. └─RSQLite:::result_create(conn@ptr, statement) ── Failure ('test-basic.R:9:3'): Dataset not downloaded and not loaded into SQLite ── `getDatabaseFile(datasetName = "GiBleed")` threw an error. Message: not an error Class: simpleError/error/condition Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-basic.R:9:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─Eunomia::getDatabaseFile(datasetName = "GiBleed") 7. └─Eunomia::extractLoadData(...) 8. └─Eunomia::loadDataFiles(...) 9. ├─DBI::dbExecute(conn = connection, statement = statement) 10. └─DBI::dbExecute(conn = connection, statement = statement) 11. ├─DBI::dbSendStatement(conn, statement, ...) 12. └─DBI::dbSendStatement(conn, statement, ...) 13. ├─DBI::dbSendQuery(conn, statement, ...) 14. └─RSQLite::dbSendQuery(conn, statement, ...) 15. └─RSQLite (local) .local(conn, statement, ...) 16. ├─methods::new(...) 17. │ ├─methods::initialize(value, ...) 18. │ └─methods::initialize(value, ...) 19. └─RSQLite:::result_create(conn@ptr, statement) ── Failure ('test-basic.R:17:3'): Dataset downloaded but not loaded into SQLite ── `getDatabaseFile(datasetName = "GiBleed")` threw an error. Message: not an error Class: simpleError/error/condition Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-basic.R:17:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─Eunomia::getDatabaseFile(datasetName = "GiBleed") 7. └─Eunomia::extractLoadData(...) 8. └─Eunomia::loadDataFiles(...) 9. ├─DBI::dbExecute(conn = connection, statement = statement) 10. └─DBI::dbExecute(conn = connection, statement = statement) 11. ├─DBI::dbSendStatement(conn, statement, ...) 12. └─DBI::dbSendStatement(conn, statement, ...) 13. ├─DBI::dbSendQuery(conn, statement, ...) 14. └─RSQLite::dbSendQuery(conn, statement, ...) 15. └─RSQLite (local) .local(conn, statement, ...) 16. ├─methods::new(...) 17. │ ├─methods::initialize(value, ...) 18. │ └─methods::initialize(value, ...) 19. └─RSQLite:::result_create(conn@ptr, statement) ── Failure ('test-basic.R:49:3'): Query ──────────────────────────────────────── Expected `personCount` > 0. Actual comparison: "0" <= "0" ── Failure ('test-basic.R:62:3'): Cohort construction ────────────────────────── Expected `cohortCount` > 0. Actual comparison: "0" <= "0" [ FAIL 7 | WARN 0 | SKIP 0 | PASS 54 ] Error: ! Test failures. Execution halted Flavor: r-release-linux-x86_64

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