CRAN Package Check Results for Package DrugUtilisation

Last updated on 2025-06-04 15:49:23 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0.2	7.61	659.65	667.26	OK
r-devel-linux-x86_64-debian-gcc	1.0.2	4.31	444.06	448.37	ERROR
r-devel-linux-x86_64-fedora-clang	1.0.3			1029.20	OK
r-devel-linux-x86_64-fedora-gcc	1.0.3			924.14	OK
r-devel-windows-x86_64	1.0.2	10.00	372.00	382.00	ERROR
r-patched-linux-x86_64	1.0.2	9.31	630.24	639.55	OK
r-release-linux-x86_64	1.0.2	7.74	632.67	640.41	OK
r-release-macos-arm64	1.0.3			127.00	OK
r-release-macos-x86_64	1.0.3			231.00	OK
r-release-windows-x86_64	1.0.3	13.00	376.00	389.00	OK
r-oldrel-macos-arm64	1.0.3			153.00	OK
r-oldrel-macos-x86_64	1.0.3			241.00	OK
r-oldrel-windows-x86_64	1.0.3	15.00	435.00	450.00	OK

Check Details

Version: 1.0.2
Check: tests
Result: ERROR Running ‘testthat.R’ [283s/143s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(DrugUtilisation) > > test_check("DrugUtilisation") Starting 2 test processes [ FAIL 6 | WARN 0 | SKIP 43 | PASS 110 ] ══ Skipped tests (43) ══════════════════════════════════════════════════════════ • On CRAN (43): 'test-benchmarkDrugUtilisation.R:2:3', 'test-dailyDose.R:2:3', 'test-addDrugUtilisation.R:3:3', 'test-addDrugUtilisation.R:162:3', 'test-addDrugUtilisation.R:202:3', 'test-generateDrugUtilisationCohortSet.R:2:3', 'test-generateDrugUtilisationCohortSet.R:23:3', 'test-generateDrugUtilisationCohortSet.R:209:3', 'test-generatedAtcCohortSet.R:2:3', 'test-generatedIngredientCohortSet.R:2:3', 'test-generatedIngredientCohortSet.R:32:3', 'test-generatedIngredientCohortSet.R:49:3', 'test-generatedIngredientCohortSet.R:64:3', 'test-generatedIngredientCohortSet.R:93:3', 'test-patterns.R:2:3', 'test-plotProportionOfPatientsCovered.R:2:3', 'test-plotProportionOfPatientsCovered.R:53:3', 'test-plotProportionOfPatientsCovered.R:95:3', 'test-plotTreatment.R:2:3', 'test-plots.R:2:3', 'test-plots.R:93:3', 'test-plots.R:157:3', 'test-require.R:2:3', 'test-require.R:108:3', 'test-require.R:313:3', 'test-require.R:419:3', 'test-require.R:513:3', 'test-require.R:584:3', 'test-indication.R:2:3', 'test-indication.R:201:3', 'test-indication.R:366:3', 'test-indication.R:483:3', 'test-summariseProportionOfPatientsCovered.R:94:3', 'test-summariseProportionOfPatientsCovered.R:170:3', 'test-summariseProportionOfPatientsCovered.R:277:3', 'test-summariseProportionOfPatientsCovered.R:499:3', 'test-summariseProportionOfPatientsCovered.R:552:3', 'test-tables.R:2:3', 'test-tables.R:97:3', 'test-tables.R:222:3', 'test-tables.R:306:3', 'test-tables.R:398:3', 'test-tables.R:457:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-generateDrugUtilisationCohortSet.R:142:3'): cohort attrition ── any(...) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-generateDrugUtilisationCohortSet.R:166:3'): cohort attrition ── colnames(cdm$cohort2) (`actual`) not identical to c(omopgenerics::cohortColumns("cohort"), "number_exposures") (`expected`). actual | expected [3] "cohort_start_date" | "cohort_start_date" [3] [4] "cohort_end_date" | "cohort_end_date" [4] [5] "number_exposures" | "number_exposures" [5] [6] "days_prescribed" - ── Failure ('test-generateDrugUtilisationCohortSet.R:177:3'): cohort attrition ── colnames(cdm$cohort3) (`actual`) not identical to c(omopgenerics::cohortColumns("cohort"), "days_prescribed") (`expected`). actual | expected [2] "subject_id" | "subject_id" [2] [3] "cohort_start_date" | "cohort_start_date" [3] [4] "cohort_end_date" | "cohort_end_date" [4] [5] "number_exposures" - [6] "days_prescribed" | "days_prescribed" [5] ── Failure ('test-generateDrugUtilisationCohortSet.R:188:3'): cohort attrition ── colnames(cdm$cohort4) (`actual`) not identical to omopgenerics::cohortColumns("cohort") (`expected`). actual | expected [2] "subject_id" | "subject_id" [2] [3] "cohort_start_date" | "cohort_start_date" [3] [4] "cohort_end_date" | "cohort_end_date" [4] [5] "number_exposures" - [6] "days_prescribed" - ── Failure ('test-generateDrugUtilisationCohortSet.R:202:3'): cohort attrition ── cohort1$number_exposures (`actual`) not identical to c(4L, 1L, 1L) (`expected`). `actual`: `expected`: 4 1 1 ── Failure ('test-generateDrugUtilisationCohortSet.R:203:3'): cohort attrition ── cohort1$days_prescribed (`actual`) not identical to c(134L, 46L, 24L) (`expected`). `actual`: `expected`: 134 46 24 [ FAIL 6 | WARN 0 | SKIP 43 | PASS 110 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.2
Check: tests
Result: ERROR Running 'testthat.R' [159s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(DrugUtilisation) > > test_check("DrugUtilisation") Starting 2 test processes [ FAIL 6 | WARN 0 | SKIP 43 | PASS 110 ] ══ Skipped tests (43) ══════════════════════════════════════════════════════════ • On CRAN (43): 'test-benchmarkDrugUtilisation.R:2:3', 'test-dailyDose.R:2:3', 'test-addDrugUtilisation.R:3:3', 'test-addDrugUtilisation.R:162:3', 'test-addDrugUtilisation.R:202:3', 'test-generatedAtcCohortSet.R:2:3', 'test-generatedIngredientCohortSet.R:2:3', 'test-generatedIngredientCohortSet.R:32:3', 'test-generatedIngredientCohortSet.R:49:3', 'test-generatedIngredientCohortSet.R:64:3', 'test-generatedIngredientCohortSet.R:93:3', 'test-generateDrugUtilisationCohortSet.R:2:3', 'test-generateDrugUtilisationCohortSet.R:23:3', 'test-generateDrugUtilisationCohortSet.R:209:3', 'test-patterns.R:2:3', 'test-plotProportionOfPatientsCovered.R:2:3', 'test-plotProportionOfPatientsCovered.R:53:3', 'test-plotProportionOfPatientsCovered.R:95:3', 'test-plotTreatment.R:2:3', 'test-plots.R:2:3', 'test-plots.R:93:3', 'test-plots.R:157:3', 'test-require.R:2:3', 'test-require.R:108:3', 'test-require.R:313:3', 'test-require.R:419:3', 'test-require.R:513:3', 'test-require.R:584:3', 'test-indication.R:2:3', 'test-indication.R:201:3', 'test-indication.R:366:3', 'test-indication.R:483:3', 'test-summariseProportionOfPatientsCovered.R:94:3', 'test-summariseProportionOfPatientsCovered.R:170:3', 'test-summariseProportionOfPatientsCovered.R:277:3', 'test-summariseProportionOfPatientsCovered.R:499:3', 'test-summariseProportionOfPatientsCovered.R:552:3', 'test-tables.R:2:3', 'test-tables.R:97:3', 'test-tables.R:222:3', 'test-tables.R:306:3', 'test-tables.R:398:3', 'test-tables.R:457:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-generateDrugUtilisationCohortSet.R:142:3'): cohort attrition ── any(...) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-generateDrugUtilisationCohortSet.R:166:3'): cohort attrition ── colnames(cdm$cohort2) (`actual`) not identical to c(omopgenerics::cohortColumns("cohort"), "number_exposures") (`expected`). actual | expected [3] "cohort_start_date" | "cohort_start_date" [3] [4] "cohort_end_date" | "cohort_end_date" [4] [5] "number_exposures" | "number_exposures" [5] [6] "days_prescribed" - ── Failure ('test-generateDrugUtilisationCohortSet.R:177:3'): cohort attrition ── colnames(cdm$cohort3) (`actual`) not identical to c(omopgenerics::cohortColumns("cohort"), "days_prescribed") (`expected`). actual | expected [2] "subject_id" | "subject_id" [2] [3] "cohort_start_date" | "cohort_start_date" [3] [4] "cohort_end_date" | "cohort_end_date" [4] [5] "number_exposures" - [6] "days_prescribed" | "days_prescribed" [5] ── Failure ('test-generateDrugUtilisationCohortSet.R:188:3'): cohort attrition ── colnames(cdm$cohort4) (`actual`) not identical to omopgenerics::cohortColumns("cohort") (`expected`). actual | expected [2] "subject_id" | "subject_id" [2] [3] "cohort_start_date" | "cohort_start_date" [3] [4] "cohort_end_date" | "cohort_end_date" [4] [5] "number_exposures" - [6] "days_prescribed" - ── Failure ('test-generateDrugUtilisationCohortSet.R:202:3'): cohort attrition ── cohort1$number_exposures (`actual`) not identical to c(4L, 1L, 1L) (`expected`). `actual`: `expected`: 4 1 1 ── Failure ('test-generateDrugUtilisationCohortSet.R:203:3'): cohort attrition ── cohort1$days_prescribed (`actual`) not identical to c(134L, 46L, 24L) (`expected`). `actual`: `expected`: 134 46 24 [ FAIL 6 | WARN 0 | SKIP 43 | PASS 110 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64