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Last updated on 2026-07-21 23:58:16 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0-2 | 7.63 | 143.53 | 151.16 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0-2 | 6.03 | 102.38 | 108.41 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0-2 | 14.00 | 237.47 | 251.47 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0-2 | 104.70 | OK | |||
| r-devel-windows-x86_64 | 1.0-2 | 12.00 | 107.00 | 119.00 | OK | --no-vignettes |
| r-patched-linux-x86_64 | 1.0-2 | 8.20 | 108.51 | 116.71 | ERROR | |
| r-release-linux-x86_64 | 1.0-2 | 7.51 | 136.24 | 143.75 | OK | |
| r-release-macos-arm64 | 1.0-2 | 2.00 | 77.00 | 79.00 | OK | |
| r-release-macos-x86_64 | 1.0-2 | 6.00 | 343.00 | 349.00 | OK | |
| r-release-windows-x86_64 | 1.0-2 | 10.00 | 113.00 | 123.00 | OK | --no-vignettes |
| r-oldrel-macos-arm64 | 1.0-2 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0-2 | 5.00 | 330.00 | 335.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0-2 | 20.00 | 128.00 | 148.00 | OK | --no-vignettes |
Version: 1.0-2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘DClusterm.Rnw’ using Sweave
Loading required package: parallel
Loading required package: sp
Loading required package: spacetime
Loading required package: DCluster
Loading required package: boot
Loading required package: spdep
Loading required package: spData
To access larger datasets in this package, install the
spDataLarge package with: `install.packages('spDataLarge',
repos='https://nowosad.github.io/drat/', type='source')`
Loading required package: sf
Linking to GEOS 3.14.1, GDAL 3.13.1, PROJ 9.8.1; sf_use_s2() is TRUE
Loading required package: MASS
Loading required package: lattice
Attaching package: 'lattice'
The following object is masked from 'package:boot':
melanoma
Loading required package: Matrix
Error: processing vignette 'DClusterm.Rnw' failed with diagnostics:
chunk 21
Error in eval(expr, .GlobalEnv) : Downdated VtV is not positive definite
--- failed re-building 'DClusterm.Rnw'
make[1]: Entering directory '/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/DClusterm.Rcheck/vign_test/DClusterm/vignettes'
pdflatex DClusterm
This is pdfTeX, Version 3.141592653-2.6-1.40.29 (TeX Live 2026/Debian) (preloaded format=pdflatex)
restricted \write18 enabled.
entering extended mode
(./DClusterm.tex
LaTeX2e <2025-11-01>
L3 programming layer <2026-05-15>
(/home/hornik/tmp/R.check/r-patched-gcc/Work/build/share/texmf/tex/latex/jss.cl
s
Document Class: jss 2026/04/28 3.6 jss class by Achim Zeileis
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2025/01/22 v1.4n Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty))
(/usr/share/texmf/tex/latex/lm/lmodern.sty)
(/usr/share/texlive/texmf-dist/tex/latex/natbib/natbib.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))))
(/usr/share/texlive/texmf-dist/tex/generic/thumbpdf/thumbpdf.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/usr/share/texmf/tex/latex/lm/t1lmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
No file DClusterm.aux.
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texmf/tex/latex/lm/ot1lmr.fd)
(/usr/share/texmf/tex/latex/lm/omllmm.fd)
(/usr/share/texmf/tex/latex/lm/omslmsy.fd)
(/usr/share/texmf/tex/latex/lm/omxlmex.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
(/usr/share/texmf/tex/latex/lm/t1lmss.fd)
Package natbib Warning: Citation `McCullaghNelder:1989' on page 1 undefined on
input line 120.
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texmf/fonts/en
c/dvips/lm/lm-ec.enc}]
Package natbib Warning: Citation `Kulldorff:1997' on page 2 undefined on input
line 129.
Package natbib Warning: Citation `DCluster:2005' on page 2 undefined on input l
ine 149.
Package natbib Warning: Citation `SpatialEpi:2016' on page 2 undefined on input
line 152.
Package natbib Warning: Citation `rsatscan:2015' on page 2 undefined on input l
ine 154.
Package natbib Warning: Citation `scanstatistics:2018' on page 2 undefined on i
nput line 157.
Package natbib Warning: Citation `smerc:2015' on page 2 undefined on input line
165.
Package natbib Warning: Citation `AMOEBA:2014' on page 2 undefined on input lin
e 167.
Package natbib Warning: Citation `Molitoretal:2010' on page 2 undefined on inpu
t line 169.
Package natbib Warning: Citation `PReMiuM:2015' on page 2 undefined on input li
ne 170.
Package natbib Warning: Citation `SNscan:2016' on page 2 undefined on input lin
e 172.
Package natbib Warning: Citation `Moraga:2017' on page 2 undefined on input lin
e 172.
Package natbib Warning: Citation `smacpod:2018' on page 2 undefined on input li
ne 176.
Package natbib Warning: Citation `Salmonetal:2016' on page 2 undefined on input
line 177.
Package natbib Warning: Citation `Meyeretal:2017' on page 2 undefined on input
line 177.
Package natbib Warning: Citation `ClustGeo:2017' on page 2 undefined on input l
ine 179.
Package natbib Warning: Citation `DClusterm' on page 2 undefined on input line
185.
Package natbib Warning: Citation `R:2018' on page 2 undefined on input line 186
.
LaTeX Warning: Reference `sec:GLM' on page 2 undefined on input line 191.
LaTeX Warning: Reference `sec:mixed' on page 2 undefined on input line 192.
LaTeX Warning: Reference `sec:zeroinfl' on page 2 undefined on input line 195.
LaTeX Warning: Reference `sec:spacetime' on page 2 undefined on input line 195.
LaTeX Warning: Reference `sec:disc' on page 2 undefined on input line 198.
[2{/usr/share/texmf/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texmf/fonts/en
c/dvips/lm/lm-rm.enc}]
Package natbib Warning: Citation `Jung:2009' on page 3 undefined on input line
207.
Package natbib Warning: Citation `ZhangLinCSDA:2009' on page 3 undefined on inp
ut line 207.
Package natbib Warning: Citation `WallerGotway:2004' on page 3 undefined on inp
ut line 231.
Package natbib Warning: Citation `BilanciaDemarinis:2014' on page 3 undefined o
n input line 274.
Package natbib Warning: Citation `GomezRubioetal:2018' on page 3 undefined on i
nput line 274.
Package natbib Warning: Citation `Rueetal:2009' on page 3 undefined on input li
ne 277.
[3{/usr/share/texmf/fonts/enc/dvips/lm/lm-mathsy.enc}{/usr/share/texmf/fonts/en
c/dvips/lm/lm-mathex.enc}] (/usr/share/texmf/tex/latex/lm/t1lmtt.fd)
Package natbib Warning: Citation `Walletetal:1992' on page 4 undefined on input
line 293.
Package natbib Warning: Citation `WallerGotway:2004' on page 4 undefined on inp
ut line 293.
LaTeX Warning: Reference `fig:NYmap' on page 4 undefined on input line 295.
Package natbib Warning: Citation `RColorBrewer:2014' on page 4 undefined on inp
ut line 296.
Package natbib Warning: Citation `WallerGotway:2004' on page 4 undefined on inp
ut line 320.
Package natbib Warning: Citation `Pebesma:2012' on page 4 undefined on input li
ne 350.
Package natbib Warning: Citation `RColorBrewer:2014' undefined on input line 35
4.
LaTeX Warning: `h' float specifier changed to `ht'.
[4] [5 <./DClusterm-006.pdf>]
LaTeX Warning: Reference `sec:spacetime' on page 6 undefined on input line 403.
Package natbib Warning: Citation `Dunn:1958' on page 6 undefined on input line
412.
[6]
LaTeX Warning: Reference `fig:NYcl' on page 7 undefined on input line 498.
[7] (/usr/share/texmf/tex/latex/lm/ts1lmtt.fd)
LaTeX Warning: Reference `fig:NYcl' on page 8 undefined on input line 584.
Package natbib Warning: Citation `gridExtra:2016' on page 8 undefined on input
line 585.
Package natbib Warning: Citation `latticeExtra:2016' on page 8 undefined on inp
ut line 586.
LaTeX Warning: `!h' float specifier changed to `!ht'.
[8{/usr/share/texmf/fonts/enc/dvips/lm/lm-ts1.enc}] [9 <./DClusterm-017.pdf>]
Package natbib Warning: Citation `BilanciaDemarinis:2014' on page 10 undefined
on input line 666.
Package natbib Warning: Citation `Dean:1992' on page 10 undefined on input line
684.
Package natbib Warning: Citation `DCluster:2005' on page 10 undefined on input
line 686.
[10]
Package natbib Warning: Citation `lme4:2015' on page 11 undefined on input line
751.
)
Runaway argument?
! File ended while scanning use of \FancyVerbGetLine.
<inserted text>
\par
<*> DClusterm
?
! Emergency stop.
<inserted text>
\par
<*> DClusterm
! ==> Fatal error occurred, no output PDF file produced!
Transcript written on DClusterm.log.
make[1]: *** [Makefile:6: DClusterm.pdf] Error 1
make[1]: Leaving directory '/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/DClusterm.Rcheck/vign_test/DClusterm/vignettes'
Error in tools::buildVignettes(dir = "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/DClusterm.Rcheck/vign_test/DClusterm", :
running 'make' failed
Execution halted
Flavor: r-patched-linux-x86_64
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