CRAN Package Check Results for Package CohortSurvival

Last updated on 2026-09-21 11:51:42 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.1.2	6.34	530.30	536.64	OK
r-devel-linux-x86_64-debian-gcc	1.1.2	4.02	368.22	372.24	OK
r-devel-linux-x86_64-fedora-clang	1.1.2			55.73	ERROR
r-devel-linux-x86_64-fedora-gcc	1.1.2			352.05	OK
r-devel-windows-x86_64	1.1.2	10.00	451.00	461.00	OK
r-patched-linux-x86_64	1.1.2	7.16	513.34	520.50	OK
r-release-linux-x86_64	1.1.2	5.87	508.10	513.97	OK
r-release-macos-arm64	1.1.2	2.00	97.00	99.00	OK
r-release-macos-x86_64	1.1.2	5.00	370.00	375.00	OK
r-release-windows-x86_64	1.1.2	9.00	434.00	443.00	OK
r-oldrel-macos-arm64	1.1.2	2.00	113.00	115.00	OK
r-oldrel-macos-x86_64	1.1.2	5.00	407.00	412.00	OK
r-oldrel-windows-x86_64	1.1.2	11.00	650.00	661.00	OK

Check Details

Version: 1.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortSurvival) > > test_check("CohortSurvival") Saving _problems/test-estimateSurvival-2615.R Saving _problems/test-plotSurvival-176.R Saving _problems/test-reexports-omopgenerics-43.R [ FAIL 3 | WARN 0 | SKIP 69 | PASS 9 ] ══ Skipped tests (69) ══════════════════════════════════════════════════════════ • On CRAN (69): 'test-addCohortSurvival.R:2:3', 'test-addCohortSurvival.R:73:3', 'test-addCohortSurvival.R:159:3', 'test-addCohortSurvival.R:246:3', 'test-addCohortSurvival.R:345:3', 'test-addCohortSurvival.R:454:3', 'test-addCohortSurvival.R:558:3', 'test-addCohortSurvival.R:644:3', 'test-addCohortSurvival.R:736:3', 'test-addCohortSurvival.R:815:3', 'test-addCohortSurvival.R:917:3', 'test-asSurvivalResult.R:2:3', 'test-asSurvivalResult.R:41:3', 'test-asSurvivalResult.R:76:3', 'test-asSurvivalResult.R:116:3', 'test-asSurvivalResult.R:170:3', 'test-asSurvivalResult.R:225:3', 'test-asSurvivalResult.R:268:3', 'test-asSurvivalResult.R:311:3', 'test-asSurvivalResult.R:352:3', 'test-estimateSurvival.R:2:3', 'test-estimateSurvival.R:81:3', 'test-estimateSurvival.R:199:3', 'test-estimateSurvival.R:250:3', 'test-estimateSurvival.R:312:3', 'test-estimateSurvival.R:470:3', 'test-estimateSurvival.R:675:3', 'test-estimateSurvival.R:817:3', 'test-estimateSurvival.R:1314:3', 'test-estimateSurvival.R:1426:3', 'test-estimateSurvival.R:1448:3', 'test-estimateSurvival.R:1515:3', 'test-estimateSurvival.R:1700:3', 'test-estimateSurvival.R:1813:3', 'test-estimateSurvival.R:1843:3', 'test-estimateSurvival.R:1862:3', 'test-estimateSurvival.R:1895:3', 'test-estimateSurvival.R:2024:3', 'test-estimateSurvival.R:2244:3', 'test-estimateSurvival.R:2321:3', 'test-estimateSurvival.R:2377:5', 'test-estimateSurvival.R:2397:3', 'test-estimateSurvival.R:2442:3', 'test-estimateSurvival.R:2464:3', 'test-estimateSurvival.R:2488:3', 'test-estimateSurvival.R:2544:3', 'test-estimateSurvival.R:2596:3', 'test-estimateSurvival.R:2636:3', 'test-estimateSurvival.R:2668:3', 'test-mockMGUS2cdm.R:2:3', 'test-plotSurvival.R:2:3', 'test-plotSurvival.R:22:3', 'test-plotSurvival.R:55:3', 'test-plotSurvival.R:86:3', 'test-plotSurvival.R:129:3', 'test-plotSurvival.R:137:3', 'test-plotSurvival.R:160:3', 'test-plotSurvival.R:189:3', 'test-plotSurvival.R:199:3', 'test-reexports-omopgenerics.R:3:3', 'test-riskTable.R:2:3', 'test-riskTable.R:65:3', 'test-tableSurvival.R:2:3', 'test-tableSurvival.R:94:3', 'test-tableSurvival.R:124:3', 'test-tableSurvival.R:148:3', 'test-tableSurvival.R:158:3', 'test-tableSurvivalAttrition.R:2:3', 'test-validateExtractSurvivalInputs.R:2:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-estimateSurvival.R:2615:3'): cohort id or cohort name as inputs ── <rlib_error_package_not_found/rlang_error/error/condition> Error in `mockMGUS2cdm()`: The package "duckdb" is required. Backtrace: ▆ 1. └─CohortSurvival::mockMGUS2cdm() at test-estimateSurvival.R:2615:3 2. └─rlang::check_installed("duckdb") ── Error ('test-plotSurvival.R:176:3'): plot with bound results with different hidden inputs ── <rlib_error_package_not_found/rlang_error/error/condition> Error in `mockMGUS2cdm()`: The package "duckdb" is required. Backtrace: ▆ 1. └─CohortSurvival::mockMGUS2cdm() at test-plotSurvival.R:176:3 2. └─rlang::check_installed("duckdb") ── Error ('test-reexports-omopgenerics.R:43:3'): omopgenerics filterSettings ─── <rlib_error_package_not_found/rlang_error/error/condition> Error in `mockMGUS2cdm()`: The package "duckdb" is required. Backtrace: ▆ 1. └─CohortSurvival::mockMGUS2cdm() at test-reexports-omopgenerics.R:43:3 2. └─rlang::check_installed("duckdb") [ FAIL 3 | WARN 0 | SKIP 69 | PASS 9 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘a00_Creating_cohorts_for_survival.Rmd’ using rmarkdown Quitting from a00_Creating_cohorts_for_survival.Rmd:30-32 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `CohortSurvival::mockMGUS2cdm()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'a00_Creating_cohorts_for_survival.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘a00_Creating_cohorts_for_survival.Rmd’ --- re-building ‘a01_Single_event_of_interest.Rmd’ using rmarkdown Quitting from a01_Single_event_of_interest.Rmd:31-33 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `CohortSurvival::mockMGUS2cdm()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'a01_Single_event_of_interest.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘a01_Single_event_of_interest.Rmd’ --- re-building ‘a02_Competing_risk_survival.Rmd’ using rmarkdown Quitting from a02_Competing_risk_survival.Rmd:31-33 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `CohortSurvival::mockMGUS2cdm()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'a02_Competing_risk_survival.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘a02_Competing_risk_survival.Rmd’ --- re-building ‘a03_Further_survival_analyses.Rmd’ using rmarkdown Quitting from a03_Further_survival_analyses.Rmd:31-33 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `CohortSurvival::mockMGUS2cdm()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'a03_Further_survival_analyses.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘a03_Further_survival_analyses.Rmd’ SUMMARY: processing the following files failed: ‘a00_Creating_cohorts_for_survival.Rmd’ ‘a01_Single_event_of_interest.Rmd’ ‘a02_Competing_risk_survival.Rmd’ ‘a03_Further_survival_analyses.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang