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Last updated on 2026-09-23 06:55:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6.1 | 5.24 | 78.35 | 83.59 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.6.1 | 4.31 | 58.99 | 63.30 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.6.1 | 36.63 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.6.1 | 53.57 | OK | |||
| r-devel-windows-x86_64 | 0.6.1 | 9.00 | 90.00 | 99.00 | OK | |
| r-patched-linux-x86_64 | 0.6.1 | 5.79 | 75.57 | 81.36 | OK | |
| r-release-linux-x86_64 | 0.6.1 | 5.46 | 74.85 | 80.31 | OK | |
| r-release-macos-arm64 | 0.6.1 | 1.00 | 21.00 | 22.00 | OK | |
| r-release-macos-x86_64 | 0.6.1 | 4.00 | 73.00 | 77.00 | OK | |
| r-release-windows-x86_64 | 0.6.1 | 8.00 | 84.00 | 92.00 | OK | |
| r-oldrel-macos-arm64 | 0.6.1 | 2.00 | 25.00 | 27.00 | OK | |
| r-oldrel-macos-x86_64 | 0.6.1 | 4.00 | 79.00 | 83.00 | OK | |
| r-oldrel-windows-x86_64 | 0.6.1 | 9.00 | 111.00 | 120.00 | OK |
Version: 0.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(CohortCosts)
>
> test_check("CohortCosts")
Attaching package: 'omopgenerics'
The following object is masked from 'package:stats':
filter
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Attaching package: 'dbplyr'
The following objects are masked from 'package:dplyr':
ident, sql, sql_escape_ident, sql_escape_string
Saving _problems/test-add-costs-2.R
Saving _problems/test-add-costs-28.R
Saving _problems/test-summarise-costs-2.R
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-add-costs.R:2:3'): addCosts extracts and aggregates domain and total costs ──
Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
Backtrace:
▆
1. ├─CohortCosts:::hermes_test_cdm() at test-add-costs.R:2:3
2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
3. ├─base::loadNamespace(x)
4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
6. │ │ └─base (local) doWithOneRestart(return(expr), restart)
7. │ └─base::stop(cond)
8. └─base (local) `<fn>`(`<pckgNtFE>`)
── Error ('test-add-costs.R:28:3'): addCosts supports infinite and NA window bounds ──
Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
Backtrace:
▆
1. ├─CohortCosts:::hermesTestCdm() at test-add-costs.R:28:3
2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
6. │ │ └─base (local) doWithOneRestart(return(expr), restart)
7. │ └─base::stop(cond)
8. └─base (local) `<fn>`(`<pckgNtFE>`)
── Error ('test-summarise-costs.R:2:3'): summariseCosts returns valid summarised_result and tableCosts formats it ──
Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb'
Backtrace:
▆
1. ├─CohortCosts:::hermesTestCdm() at test-summarise-costs.R:2:3
2. │ └─DBI::dbConnect(duckdb::duckdb(), ":memory:") at ./helper-eunomia.R:8:3
3. ├─base::loadNamespace(x) at ./helper-eunomia.R:8:3
4. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
6. │ │ └─base (local) doWithOneRestart(return(expr), restart)
7. │ └─base::stop(cond)
8. └─base (local) `<fn>`(`<pckgNtFE>`)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
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