CRAN Package Check Results for Package CohortCharacteristics

Last updated on 2024-05-02 04:00:10 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.0	7.72	284.69	292.41	OK
r-devel-linux-x86_64-debian-gcc	0.1.0	6.91	200.74	207.65	OK
r-devel-linux-x86_64-fedora-clang	0.1.0			271.63	ERROR
r-devel-linux-x86_64-fedora-gcc	0.1.0			271.78	ERROR
r-devel-windows-x86_64	0.1.0	9.00	191.00	200.00	OK
r-patched-linux-x86_64	0.1.0	7.95	275.03	282.98	OK
r-release-linux-x86_64	0.1.0	7.92	271.16	279.08	OK
r-release-macos-arm64	0.1.0			77.00	OK
r-release-macos-x86_64	0.1.0			146.00	OK
r-release-windows-x86_64	0.1.0	9.00	191.00	200.00	OK
r-oldrel-macos-arm64	0.1.0			90.00	OK
r-oldrel-macos-x86_64	0.1.0			133.00	OK
r-oldrel-windows-x86_64	0.1.0	12.00	196.00	208.00	ERROR

Check Details

Version: 0.1.0
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [116s/122s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes [ FAIL 5 | WARN 0 | SKIP 13 | PASS 5 ] ══ Skipped tests (13) ══════════════════════════════════════════════════════════ • On CRAN (12): 'test-plotCharacteristics.R:2:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-plotSummarised.R:2:3', 'test-plotSummarised.R:82:3', 'test-plotSummarised.R:179:3', 'test-plotSummarised.R:263:3', 'test-summariseCohortIntersect.R:2:3', 'test-summariseCohortOverlap.R:2:3', 'test-summariseCohortTiming.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-tableSummarised.R:2:3', 'test-tableSummarised.R:114:3' • empty test (1): 'test-tableSummarised.R:235:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-summariseCharacteristics.R:76:3'): test summariseCharacteristics ── Expected `... <- NULL` to run without any errors. i Actually got a <vctrs_error_subscript_oob> with text: Can't select columns that don't exist. x Column `result_type` doesn't exist. ── Error ('test-summariseCharacteristics.R:88:3'): test summariseCharacteristics ── Error in `eval(code, test_env)`: object 'result' not found Backtrace: ▆ 1. ├─testthat::expect_true(inherits(result, "summarised_result")) at test-summariseCharacteristics.R:88:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─base::inherits(result, "summarised_result") ── Failure ('test-summariseCharacteristics.R:291:3'): test empty cohort ──────── Expected `summariseCharacteristics(...)` to run without any errors. i Actually got a <vctrs_error_subscript_oob> with text: Can't select columns that don't exist. x Column `result_type` doesn't exist. ── Failure ('test-summariseCharacteristics.R:301:3'): test empty cohort ──────── Expected `... <- NULL` to run without any errors. i Actually got a <vctrs_error_subscript_oob> with text: Can't select columns that don't exist. x Column `result_type` doesn't exist. ── Failure ('test-summariseCharacteristics.R:308:3'): test empty cohort ──────── Expected `... <- NULL` to run without any errors. i Actually got a <vctrs_error_subscript_oob> with text: Can't select columns that don't exist. x Column `result_type` doesn't exist. [ FAIL 5 | WARN 0 | SKIP 13 | PASS 5 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘a06_summarisePatientCharacteristics.Rmd’ using rmarkdown Quitting from lines at lines 27-109 [unnamed-chunk-2] (a06_summarisePatientCharacteristics.Rmd) Error: processing vignette 'a06_summarisePatientCharacteristics.Rmd' failed with diagnostics: Can't select columns that don't exist. ✖ Column `result_type` doesn't exist. --- failed re-building ‘a06_summarisePatientCharacteristics.Rmd’ Warning: Connection is garbage-collected, use dbDisconnect() to avoid this. --- re-building ‘a08_summariseCohortOverlap.Rmd’ using rmarkdown --- finished re-building ‘a08_summariseCohortOverlap.Rmd’ SUMMARY: processing the following file failed: ‘a06_summarisePatientCharacteristics.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-windows-x86_64

Version: 0.1.0
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [107s/111s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes [ FAIL 5 | WARN 0 | SKIP 13 | PASS 5 ] ══ Skipped tests (13) ══════════════════════════════════════════════════════════ • On CRAN (12): 'test-plotCharacteristics.R:2:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-plotSummarised.R:2:3', 'test-plotSummarised.R:82:3', 'test-plotSummarised.R:179:3', 'test-plotSummarised.R:263:3', 'test-summariseCohortIntersect.R:2:3', 'test-summariseCohortOverlap.R:2:3', 'test-summariseCohortTiming.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-tableSummarised.R:2:3', 'test-tableSummarised.R:114:3' • empty test (1): 'test-tableSummarised.R:235:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-summariseCharacteristics.R:76:3'): test summariseCharacteristics ── Expected `... <- NULL` to run without any errors. i Actually got a <vctrs_error_subscript_oob> with text: Can't select columns that don't exist. x Column `result_type` doesn't exist. ── Error ('test-summariseCharacteristics.R:88:3'): test summariseCharacteristics ── Error in `eval(code, test_env)`: object 'result' not found Backtrace: ▆ 1. ├─testthat::expect_true(inherits(result, "summarised_result")) at test-summariseCharacteristics.R:88:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─base::inherits(result, "summarised_result") ── Failure ('test-summariseCharacteristics.R:291:3'): test empty cohort ──────── Expected `summariseCharacteristics(...)` to run without any errors. i Actually got a <vctrs_error_subscript_oob> with text: Can't select columns that don't exist. x Column `result_type` doesn't exist. ── Failure ('test-summariseCharacteristics.R:301:3'): test empty cohort ──────── Expected `... <- NULL` to run without any errors. i Actually got a <vctrs_error_subscript_oob> with text: Can't select columns that don't exist. x Column `result_type` doesn't exist. ── Failure ('test-summariseCharacteristics.R:308:3'): test empty cohort ──────── Expected `... <- NULL` to run without any errors. i Actually got a <vctrs_error_subscript_oob> with text: Can't select columns that don't exist. x Column `result_type` doesn't exist. [ FAIL 5 | WARN 0 | SKIP 13 | PASS 5 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.1.0
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [78s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes [ FAIL 5 | WARN 0 | SKIP 13 | PASS 5 ] ══ Skipped tests (13) ══════════════════════════════════════════════════════════ • On CRAN (12): 'test-plotCharacteristics.R:2:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-plotSummarised.R:2:3', 'test-plotSummarised.R:82:3', 'test-plotSummarised.R:179:3', 'test-plotSummarised.R:263:3', 'test-summariseCohortIntersect.R:2:3', 'test-summariseCohortOverlap.R:2:3', 'test-summariseCohortTiming.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-tableSummarised.R:2:3', 'test-tableSummarised.R:114:3' • empty test (1): 'test-tableSummarised.R:235:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-summariseCharacteristics.R:76:3'): test summariseCharacteristics ── Expected `... <- NULL` to run without any errors. i Actually got a <vctrs_error_subscript_oob> with text: Can't select columns that don't exist. x Column `result_type` doesn't exist. ── Error ('test-summariseCharacteristics.R:88:3'): test summariseCharacteristics ── Error in `eval(code, test_env)`: object 'result' not found Backtrace: ▆ 1. ├─testthat::expect_true(inherits(result, "summarised_result")) at test-summariseCharacteristics.R:88:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─base::inherits(result, "summarised_result") ── Failure ('test-summariseCharacteristics.R:291:3'): test empty cohort ──────── Expected `summariseCharacteristics(...)` to run without any errors. i Actually got a <vctrs_error_subscript_oob> with text: Can't select columns that don't exist. x Column `result_type` doesn't exist. ── Failure ('test-summariseCharacteristics.R:301:3'): test empty cohort ──────── Expected `... <- NULL` to run without any errors. i Actually got a <vctrs_error_subscript_oob> with text: Can't select columns that don't exist. x Column `result_type` doesn't exist. ── Failure ('test-summariseCharacteristics.R:308:3'): test empty cohort ──────── Expected `... <- NULL` to run without any errors. i Actually got a <vctrs_error_subscript_oob> with text: Can't select columns that don't exist. x Column `result_type` doesn't exist. [ FAIL 5 | WARN 0 | SKIP 13 | PASS 5 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64