CRAN Package Check Results for Package CohortCharacteristics

Last updated on 2026-01-19 11:48:55 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.1.0	6.72	886.08	892.80	OK
r-devel-linux-x86_64-debian-gcc	1.1.0	5.17	604.33	609.50	OK
r-devel-linux-x86_64-fedora-clang	1.1.0	12.00	1460.49	1472.49	OK
r-devel-windows-x86_64	1.1.0	9.00	540.00	549.00	OK
r-patched-linux-x86_64	1.1.0	7.62	847.52	855.14	OK
r-release-linux-x86_64	1.1.0	6.42	853.21	859.63	OK
r-release-macos-arm64	1.1.0	2.00	134.00	136.00	OK
r-release-macos-x86_64	1.1.0	5.00	632.00	637.00	OK
r-release-windows-x86_64	1.1.0	9.00	555.00	564.00	OK
r-oldrel-macos-arm64	1.1.0	2.00	139.00	141.00	NOTE
r-oldrel-macos-x86_64	1.1.0	5.00	403.00	408.00	ERROR
r-oldrel-windows-x86_64	1.1.0	12.00	784.00	796.00	NOTE

Check Details

Version: 1.1.0
Check: installed package size
Result: NOTE installed size is 6.3Mb sub-directories of 1Mb or more: doc 4.3Mb help 1.8Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.1.0
Check: for code/documentation mismatches
Result: WARN Codoc mismatches from Rd file 'mockCohortCharacteristics.Rd': mockCohortCharacteristics Code: function(con = NULL, writeSchema = NULL, numberIndividuals = 10, ..., seed = NULL) Docs: function(numberIndividuals = 10, ..., source = "local", con = lifecycle::deprecated(), writeSchema = lifecycle::deprecated(), seed = lifecycle::deprecated()) Argument names in docs not in code: source Mismatches in argument names (first 3): Position: 1 Code: con Docs: numberIndividuals Position: 2 Code: writeSchema Docs: ... Position: 3 Code: numberIndividuals Docs: source Mismatches in argument default values: Name: 'con' Code: NULL Docs: lifecycle::deprecated() Name: 'writeSchema' Code: NULL Docs: lifecycle::deprecated() Name: 'seed' Code: NULL Docs: lifecycle::deprecated() Flavor: r-oldrel-macos-x86_64

Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘summarise_characteristics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB Quitting from summarise_characteristics.Rmd:24-49 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'arrow' --- Backtrace: ▆ 1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb") 2. │ └─omock:::readTables(tmpFolder, cv) 3. │ └─omock:::castColumns(...) 4. │ ├─dplyr::filter(...) 5. │ ├─dplyr:::filter.data.frame(...) 6. │ │ └─dplyr:::dplyr_quosures(...) 7. │ │ └─rlang::quos(..., .ignore_empty = "all") 8. │ └─base::colnames(x) 9. │ └─base::is.data.frame(x) 10. └─base::loadNamespace(x) 11. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 12. └─base (local) withOneRestart(expr, restarts[[1L]]) 13. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'summarise_characteristics.Rmd' failed with diagnostics: there is no package called 'arrow' --- failed re-building ‘summarise_characteristics.Rmd’ --- re-building ‘summarise_cohort_overlap.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB Quitting from summarise_cohort_overlap.Rmd:27-57 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'arrow' --- Backtrace: ▆ 1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb") 2. │ └─omock:::readTables(tmpFolder, cv) 3. │ └─omock:::castColumns(...) 4. │ ├─dplyr::filter(...) 5. │ ├─dplyr:::filter.data.frame(...) 6. │ │ └─dplyr:::dplyr_quosures(...) 7. │ │ └─rlang::quos(..., .ignore_empty = "all") 8. │ └─base::colnames(x) 9. │ └─base::is.data.frame(x) 10. └─base::loadNamespace(x) 11. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 12. └─base (local) withOneRestart(expr, restarts[[1L]]) 13. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'summarise_cohort_overlap.Rmd' failed with diagnostics: there is no package called 'arrow' --- failed re-building ‘summarise_cohort_overlap.Rmd’ --- re-building ‘summarise_cohort_timing.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB Quitting from summarise_cohort_timing.Rmd:25-55 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'arrow' --- Backtrace: ▆ 1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb") 2. │ └─omock:::readTables(tmpFolder, cv) 3. │ └─omock:::castColumns(...) 4. │ ├─dplyr::filter(...) 5. │ ├─dplyr:::filter.data.frame(...) 6. │ │ └─dplyr:::dplyr_quosures(...) 7. │ │ └─rlang::quos(..., .ignore_empty = "all") 8. │ └─base::colnames(x) 9. │ └─base::is.data.frame(x) 10. └─base::loadNamespace(x) 11. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 12. └─base (local) withOneRestart(expr, restarts[[1L]]) 13. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'summarise_cohort_timing.Rmd' failed with diagnostics: there is no package called 'arrow' --- failed re-building ‘summarise_cohort_timing.Rmd’ --- re-building ‘summarise_large_scale_characteristics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB Quitting from summarise_large_scale_characteristics.Rmd:31-48 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'arrow' --- Backtrace: ▆ 1. ├─omock::mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb") 2. │ └─omock:::readTables(tmpFolder, cv) 3. │ └─omock:::castColumns(...) 4. │ ├─dplyr::filter(...) 5. │ ├─dplyr:::filter.data.frame(...) 6. │ │ └─dplyr:::dplyr_quosures(...) 7. │ │ └─rlang::quos(..., .ignore_empty = "all") 8. │ └─base::colnames(x) 9. │ └─base::is.data.frame(x) 10. └─base::loadNamespace(x) 11. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 12. └─base (local) withOneRestart(expr, restarts[[1L]]) 13. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'summarise_large_scale_characteristics.Rmd' failed with diagnostics: there is no package called 'arrow' --- failed re-building ‘summarise_large_scale_characteristics.Rmd’ SUMMARY: processing the following files failed: ‘summarise_characteristics.Rmd’ ‘summarise_cohort_overlap.Rmd’ ‘summarise_cohort_timing.Rmd’ ‘summarise_large_scale_characteristics.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-x86_64