CRAN Package Check Results for Package BoolNet

Last updated on 2024-05-02 01:56:53 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	2.1.9	25.49	96.44	121.93	NOTE
r-devel-linux-x86_64-debian-gcc	2.1.9	18.43	69.74	88.17	NOTE
r-devel-linux-x86_64-fedora-clang	2.1.9			146.78	NOTE
r-devel-linux-x86_64-fedora-gcc	2.1.9			158.73	NOTE
r-devel-windows-x86_64	2.1.9	25.00	113.00	138.00	NOTE
r-patched-linux-x86_64	2.1.9	21.43	91.22	112.65	NOTE
r-release-linux-x86_64	2.1.9	23.13	88.57	111.70	NOTE
r-release-macos-arm64	2.1.9			51.00	NOTE
r-release-windows-x86_64	2.1.9	27.00	112.00	139.00	NOTE
r-oldrel-macos-arm64	2.1.9			48.00	OK
r-oldrel-macos-x86_64	2.1.9			183.00	OK
r-oldrel-windows-x86_64	2.1.9	30.00	122.00	152.00	OK

Check Details

Version: 2.1.9
Check: Rd files
Result: NOTE checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup? 23 | Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state. | ^ checkRd: (-1) plotSequence.Rd:42: Lost braces; missing escapes or markup? 42 | Specifies whether the actual attractor states are included in the plot or not (see also \code{\link{getPathToAttractor}}). If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. | ^ checkRd: (-1) sequenceToLaTeX.Rd:37: Lost braces; missing escapes or markup? 37 | Specifies whether the actual attractor states are included in the table or not (see also \code{\link{getPathToAttractor}}). If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. | ^ checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup? 131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies. | ^ checkRd: (-1) testNetworkProperties.Rd:140: Lost braces 140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64