CRAN Package Check Results for Package BioTIMEr

Last updated on 2025-10-09 20:04:01 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.2.5	12.35	239.36	251.71	OK
r-devel-linux-x86_64-debian-gcc	0.2.5	9.63	169.83	179.46	ERROR
r-devel-linux-x86_64-fedora-clang	0.2.5			406.48	ERROR
r-devel-linux-x86_64-fedora-gcc	0.2.5			570.34	ERROR
r-devel-windows-x86_64	0.2.5	14.00	210.00	224.00	OK
r-patched-linux-x86_64	0.2.5	12.78	221.91	234.69	OK
r-release-linux-x86_64	0.2.5	11.45	220.54	231.99	OK
r-release-macos-arm64	0.2.5			206.00	OK
r-release-macos-x86_64	0.2.5			403.00	OK
r-release-windows-x86_64	0.2.5	13.00	208.00	221.00	OK
r-oldrel-macos-arm64	0.2.5			222.00	OK
r-oldrel-macos-x86_64	0.2.5			419.00	OK
r-oldrel-windows-x86_64	0.2.5	19.00	276.00	295.00	OK

Check Details

Version: 0.2.5
Check: tests
Result: ERROR Running ‘testthat.R’ [24s/19s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("BioTIMEr") Loading required package: BioTIMEr Starting 2 test processes [ FAIL 4 | WARN 3 | SKIP 16 | PASS 59 ] ══ Skipped tests (16) ══════════════════════════════════════════════════════════ • On CRAN (16): 'test-metrics.R:60:3', 'test-metrics.R:80:3', 'test-metrics.R:86:3', 'test-metrics.R:92:3', 'test-metrics.R:98:3', 'test-gridding.R:52:3', 'test-gridding.R:58:3', 'test-gridding.R:64:3', 'test-scales.R:35:3', 'test-slopes.R:3:3', 'test-workflow_alpha.R:3:3', 'test-workflow_beta.R:3:3', 'test-runResampling.R:42:3', 'test-runResampling.R:81:3', 'test-runResampling.R:119:3', 'test-runResampling.R:157:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-metrics.R:52:3'): getAlpha computes accurate biodiversity metrics ── result$Shannon (`actual`) not equal to `shannon_expected` (`expected`). `names(actual)` is absent `names(expected)` is a character vector ('1', '2', '3', '4', '5', ...) ── Failure ('test-metrics.R:53:3'): getAlpha computes accurate biodiversity metrics ── result$expShannon (`actual`) not equal to exp(shannon_expected) (`expected`). `names(actual)` is absent `names(expected)` is a character vector ('1', '2', '3', '4', '5', ...) ── Failure ('test-metrics.R:54:3'): getAlpha computes accurate biodiversity metrics ── result$Simpson (`actual`) not equal to `simpson_expected` (`expected`). `names(actual)` is absent `names(expected)` is a character vector ('1', '2', '3', '4', '5', ...) ── Failure ('test-metrics.R:55:3'): getAlpha computes accurate biodiversity metrics ── result$invSimpson (`actual`) not equal to `inv_expected` (`expected`). `names(actual)` is absent `names(expected)` is a character vector ('1', '2', '3', '4', '5', ...) [ FAIL 4 | WARN 3 | SKIP 16 | PASS 59 ] Deleting unused snapshots: • scales/color-continuous-cool-false.svg • scales/color-continuous-cool-true.svg • scales/color-continuous-gradient-false.svg • scales/color-continuous-gradient-true.svg • scales/color-continuous-realms-false.svg • scales/color-continuous-realms-true.svg • scales/color-continuous-warm-false.svg • scales/color-continuous-warm-true.svg • scales/color-cool-false-false.svg • scales/color-cool-false-true.svg • scales/color-cool-true-false.svg • scales/color-cool-true-true.svg • scales/color-gradient-false-false.svg • scales/color-gradient-false-true.svg • scales/color-gradient-true-false.svg • scales/color-gradient-true-true.svg • scales/color-realms-false-false.svg • scales/color-realms-false-true.svg • scales/color-realms-true-false.svg • scales/color-realms-true-true.svg • scales/color-warm-false-false.svg • scales/color-warm-false-true.svg • scales/color-warm-true-false.svg • scales/color-warm-true-true.svg • scales/fill-continuous-cool-false.svg • scales/fill-continuous-cool-true.svg • scales/fill-continuous-gradient-false.svg • scales/fill-continuous-gradient-true.svg • scales/fill-continuous-realms-false.svg • scales/fill-continuous-realms-true.svg • scales/fill-continuous-warm-false.svg • scales/fill-continuous-warm-true.svg • scales/fill-cool-false-false.svg • scales/fill-cool-false-true.svg • scales/fill-cool-true-false.svg • scales/fill-cool-true-true.svg • scales/fill-gradient-false-false.svg • scales/fill-gradient-false-true.svg • scales/fill-gradient-true-false.svg • scales/fill-gradient-true-true.svg • scales/fill-realms-false-false.svg • scales/fill-realms-false-true.svg • scales/fill-realms-true-false.svg • scales/fill-realms-true-true.svg • scales/fill-warm-false-false.svg • scales/fill-warm-false-true.svg • scales/fill-warm-true-false.svg • scales/fill-warm-true-true.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.5
Check: tests
Result: ERROR Running ‘testthat.R’ [50s/94s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("BioTIMEr") Loading required package: BioTIMEr Starting 2 test processes [ FAIL 4 | WARN 3 | SKIP 16 | PASS 59 ] ══ Skipped tests (16) ══════════════════════════════════════════════════════════ • On CRAN (16): 'test-metrics.R:60:3', 'test-metrics.R:80:3', 'test-metrics.R:86:3', 'test-metrics.R:92:3', 'test-metrics.R:98:3', 'test-gridding.R:52:3', 'test-gridding.R:58:3', 'test-gridding.R:64:3', 'test-scales.R:35:3', 'test-slopes.R:3:3', 'test-workflow_alpha.R:3:3', 'test-workflow_beta.R:3:3', 'test-runResampling.R:42:3', 'test-runResampling.R:81:3', 'test-runResampling.R:119:3', 'test-runResampling.R:157:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-metrics.R:52:3'): getAlpha computes accurate biodiversity metrics ── result$Shannon (`actual`) not equal to `shannon_expected` (`expected`). `names(actual)` is absent `names(expected)` is a character vector ('1', '2', '3', '4', '5', ...) ── Failure ('test-metrics.R:53:3'): getAlpha computes accurate biodiversity metrics ── result$expShannon (`actual`) not equal to exp(shannon_expected) (`expected`). `names(actual)` is absent `names(expected)` is a character vector ('1', '2', '3', '4', '5', ...) ── Failure ('test-metrics.R:54:3'): getAlpha computes accurate biodiversity metrics ── result$Simpson (`actual`) not equal to `simpson_expected` (`expected`). `names(actual)` is absent `names(expected)` is a character vector ('1', '2', '3', '4', '5', ...) ── Failure ('test-metrics.R:55:3'): getAlpha computes accurate biodiversity metrics ── result$invSimpson (`actual`) not equal to `inv_expected` (`expected`). `names(actual)` is absent `names(expected)` is a character vector ('1', '2', '3', '4', '5', ...) [ FAIL 4 | WARN 3 | SKIP 16 | PASS 59 ] Deleting unused snapshots: • scales/color-continuous-cool-false.svg • scales/color-continuous-cool-true.svg • scales/color-continuous-gradient-false.svg • scales/color-continuous-gradient-true.svg • scales/color-continuous-realms-false.svg • scales/color-continuous-realms-true.svg • scales/color-continuous-warm-false.svg • scales/color-continuous-warm-true.svg • scales/color-cool-false-false.svg • scales/color-cool-false-true.svg • scales/color-cool-true-false.svg • scales/color-cool-true-true.svg • scales/color-gradient-false-false.svg • scales/color-gradient-false-true.svg • scales/color-gradient-true-false.svg • scales/color-gradient-true-true.svg • scales/color-realms-false-false.svg • scales/color-realms-false-true.svg • scales/color-realms-true-false.svg • scales/color-realms-true-true.svg • scales/color-warm-false-false.svg • scales/color-warm-false-true.svg • scales/color-warm-true-false.svg • scales/color-warm-true-true.svg • scales/fill-continuous-cool-false.svg • scales/fill-continuous-cool-true.svg • scales/fill-continuous-gradient-false.svg • scales/fill-continuous-gradient-true.svg • scales/fill-continuous-realms-false.svg • scales/fill-continuous-realms-true.svg • scales/fill-continuous-warm-false.svg • scales/fill-continuous-warm-true.svg • scales/fill-cool-false-false.svg • scales/fill-cool-false-true.svg • scales/fill-cool-true-false.svg • scales/fill-cool-true-true.svg • scales/fill-gradient-false-false.svg • scales/fill-gradient-false-true.svg • scales/fill-gradient-true-false.svg • scales/fill-gradient-true-true.svg • scales/fill-realms-false-false.svg • scales/fill-realms-false-true.svg • scales/fill-realms-true-false.svg • scales/fill-realms-true-true.svg • scales/fill-warm-false-false.svg • scales/fill-warm-false-true.svg • scales/fill-warm-true-false.svg • scales/fill-warm-true-true.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.2.5
Check: tests
Result: ERROR Running ‘testthat.R’ [49s/86s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("BioTIMEr") Loading required package: BioTIMEr Starting 2 test processes [ FAIL 4 | WARN 3 | SKIP 16 | PASS 59 ] ══ Skipped tests (16) ══════════════════════════════════════════════════════════ • On CRAN (16): 'test-metrics.R:60:3', 'test-metrics.R:80:3', 'test-metrics.R:86:3', 'test-metrics.R:92:3', 'test-metrics.R:98:3', 'test-gridding.R:52:3', 'test-gridding.R:58:3', 'test-gridding.R:64:3', 'test-scales.R:35:3', 'test-slopes.R:3:3', 'test-workflow_alpha.R:3:3', 'test-workflow_beta.R:3:3', 'test-runResampling.R:42:3', 'test-runResampling.R:81:3', 'test-runResampling.R:119:3', 'test-runResampling.R:157:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-metrics.R:52:3'): getAlpha computes accurate biodiversity metrics ── result$Shannon (`actual`) not equal to `shannon_expected` (`expected`). `names(actual)` is absent `names(expected)` is a character vector ('1', '2', '3', '4', '5', ...) ── Failure ('test-metrics.R:53:3'): getAlpha computes accurate biodiversity metrics ── result$expShannon (`actual`) not equal to exp(shannon_expected) (`expected`). `names(actual)` is absent `names(expected)` is a character vector ('1', '2', '3', '4', '5', ...) ── Failure ('test-metrics.R:54:3'): getAlpha computes accurate biodiversity metrics ── result$Simpson (`actual`) not equal to `simpson_expected` (`expected`). `names(actual)` is absent `names(expected)` is a character vector ('1', '2', '3', '4', '5', ...) ── Failure ('test-metrics.R:55:3'): getAlpha computes accurate biodiversity metrics ── result$invSimpson (`actual`) not equal to `inv_expected` (`expected`). `names(actual)` is absent `names(expected)` is a character vector ('1', '2', '3', '4', '5', ...) [ FAIL 4 | WARN 3 | SKIP 16 | PASS 59 ] Deleting unused snapshots: • scales/color-continuous-cool-false.svg • scales/color-continuous-cool-true.svg • scales/color-continuous-gradient-false.svg • scales/color-continuous-gradient-true.svg • scales/color-continuous-realms-false.svg • scales/color-continuous-realms-true.svg • scales/color-continuous-warm-false.svg • scales/color-continuous-warm-true.svg • scales/color-cool-false-false.svg • scales/color-cool-false-true.svg • scales/color-cool-true-false.svg • scales/color-cool-true-true.svg • scales/color-gradient-false-false.svg • scales/color-gradient-false-true.svg • scales/color-gradient-true-false.svg • scales/color-gradient-true-true.svg • scales/color-realms-false-false.svg • scales/color-realms-false-true.svg • scales/color-realms-true-false.svg • scales/color-realms-true-true.svg • scales/color-warm-false-false.svg • scales/color-warm-false-true.svg • scales/color-warm-true-false.svg • scales/color-warm-true-true.svg • scales/fill-continuous-cool-false.svg • scales/fill-continuous-cool-true.svg • scales/fill-continuous-gradient-false.svg • scales/fill-continuous-gradient-true.svg • scales/fill-continuous-realms-false.svg • scales/fill-continuous-realms-true.svg • scales/fill-continuous-warm-false.svg • scales/fill-continuous-warm-true.svg • scales/fill-cool-false-false.svg • scales/fill-cool-false-true.svg • scales/fill-cool-true-false.svg • scales/fill-cool-true-true.svg • scales/fill-gradient-false-false.svg • scales/fill-gradient-false-true.svg • scales/fill-gradient-true-false.svg • scales/fill-gradient-true-true.svg • scales/fill-realms-false-false.svg • scales/fill-realms-false-true.svg • scales/fill-realms-true-false.svg • scales/fill-realms-true-true.svg • scales/fill-warm-false-false.svg • scales/fill-warm-false-true.svg • scales/fill-warm-true-false.svg • scales/fill-warm-true-true.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc