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poolABC: Approximate Bayesian Computation with Pooled Sequencing Data
Provides functions to simulate Pool-seq data under models of
demographic formation and to import Pool-seq data from real populations.
Implements two ABC algorithms for performing parameter estimation and
model selection using Pool-seq data. Cross-validation can also be
performed to assess the accuracy of ABC estimates and model choice.
Carvalho et al., (2022) <doi:10.1111/1755-0998.13834>.
| Version: |
1.0.0 |
| Depends: |
R (≥ 2.10) |
| Imports: |
doParallel, foreach, ggplot2, graphics, locfit, MetricsWeighted, nnet, poolHelper (≥ 1.1.0), RColorBrewer, rlang, scrm, stats, utils |
| Suggests: |
knitr, rmarkdown |
| Published: |
2023-08-08 |
| Author: |
João Carvalho 
[aut, cre, cph],
Vítor Sousa [aut] |
| Maintainer: |
João Carvalho <jgcarvalho at fc.ul.pt> |
| BugReports: |
https://github.com/joao-mcarvalho/poolABC/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/joao-mcarvalho/poolABC |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
poolABC results |
Documentation:
Downloads:
Linking:
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https://CRAN.R-project.org/package=poolABC
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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