scrm: Simulating the Evolution of Biological Sequences

A coalescent simulator that allows the rapid simulation of biological sequences under neutral models of evolution, see Staab et al. (2015) <doi:10.1093/bioinformatics/btu861>. Different to other coalescent based simulations, it has an optional approximation parameter that allows for high accuracy while maintaining a linear run time cost for long sequences. It is optimized for simulating massive data sets as produced by Next- Generation Sequencing technologies for up to several thousand sequences.

Version:	1.7.5
Depends:	R (≥ 3.1.0)
Imports:	Rcpp (≥ 0.11.2)
LinkingTo:	Rcpp
Suggests:	ape, knitr, rmarkdown, testthat (≥ 0.9.0)
Published:	2024-01-08
Author:	Paul Staab [aut, cph], Zhu Sha [aut, cph], Dirk Metzler [aut, cre, cph, ths], Gerton Lunter [aut, cph, ths]
Maintainer:	Dirk Metzler <metzler at bio.lmu.de>
BugReports:	https://github.com/scrm/scrm-r/issues
License:	GPL (≥ 3)
URL:	https://github.com/scrm/scrm-r
NeedsCompilation:	yes
Citation:	scrm citation info
Materials:	README NEWS
CRAN checks:	scrm results

Documentation:

Reference manual:	scrm.pdf
Vignettes:	scrm-Arguments scrm-TreesForApe

Downloads:

Package source:	scrm_1.7.5.tar.gz
Windows binaries:	r-devel: scrm_1.7.5.zip, r-release: scrm_1.7.5.zip, r-oldrel: scrm_1.7.5.zip
macOS binaries:	r-release (arm64): scrm_1.7.5.tgz, r-oldrel (arm64): scrm_1.7.5.tgz, r-release (x86_64): scrm_1.7.5.tgz, r-oldrel (x86_64): scrm_1.7.5.tgz
Old sources:	scrm archive

Reverse dependencies:

Reverse imports:	coala, poolABC, poolHelper
Reverse suggests:	jackalope

Linking:

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