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waves: Vis-NIR Spectral Analysis Wrapper

Originally designed application in the context of resource-limited plant research and breeding programs, 'waves' provides an open-source solution to spectral data processing and model development by bringing useful packages together into a streamlined pipeline. This package is wrapper for functions related to the analysis of point visible and near-infrared reflectance measurements. It includes visualization, filtering, aggregation, preprocessing, cross-validation set formation, model training, and prediction functions to enable open-source association of spectral and reference data. This package is documented in a peer-reviewed manuscript in the Plant Phenome Journal <doi:10.1002/ppj2.20012>. Specialized cross-validation schemes are described in detail in Jarquín et al. (2017) <doi:10.3835/plantgenome2016.12.0130>. Example data is from Ikeogu et al. (2017) <doi:10.1371/journal.pone.0188918>.

Version: 0.2.5
Depends: R (≥ 3.5)
Imports: caret, dplyr, ggplot2, lifecycle, magrittr, pls, prospectr, randomForest, readr, rlang, scales, spectacles, stringr, tibble, tidyr (≥ 1.0), tidyselect
Suggests: testthat (≥ 2.1.0), knitr, rmarkdown
Published: 2023-12-12
DOI: 10.32614/CRAN.package.waves
Author: Jenna Hershberger ORCID iD [aut, cre], Michael Gore [ths], NSF BREAD IOS-1543958 [fnd]
Maintainer: Jenna Hershberger <jmh579 at cornell.edu>
BugReports: https://github.com/GoreLab/waves/issues
License: MIT + file LICENSE
URL: https://github.com/GoreLab/waves
NeedsCompilation: no
Citation: waves citation info
Materials: README NEWS
CRAN checks: waves results

Documentation:

Reference manual: waves.pdf
Vignettes: waves

Downloads:

Package source: waves_0.2.5.tar.gz
Windows binaries: r-devel: waves_0.2.5.zip, r-release: waves_0.2.5.zip, r-oldrel: waves_0.2.5.zip
macOS binaries: r-release (arm64): waves_0.2.5.tgz, r-oldrel (arm64): waves_0.2.5.tgz, r-release (x86_64): waves_0.2.5.tgz, r-oldrel (x86_64): waves_0.2.5.tgz
Old sources: waves archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=waves to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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