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volcano3D: 3D Volcano Plots and Polar Plots for Three-Class Data

Generates interactive plots for analysing and visualising three-class high dimensional data. It is particularly suited to visualising differences in continuous attributes such as gene/protein/biomarker expression levels between three groups. Differential gene/biomarker expression analysis between two classes is typically shown as a volcano plot. However, with three groups this type of visualisation is particularly difficult to interpret. This package generates 3D volcano plots and 3-way polar plots for easier interpretation of three-class data.

Version: 2.0.9
Depends: R (≥ 3.5)
Imports: plotly, ggplot2, ggpubr, htmlwidgets, magrittr, methods, Rfast, rlang, matrixTests
Suggests: DESeq2, edgeR, limma, qvalue, SummarizedExperiment, knitr, rmarkdown, kableExtra, usethis, easylabel
Published: 2023-05-17
DOI: 10.32614/CRAN.package.volcano3D
Author: Katriona Goldmann ORCID iD [aut, cre], Myles Lewis ORCID iD [aut]
Maintainer: Katriona Goldmann <katrionagoldmann at gmail.com>
BugReports: https://github.com/KatrionaGoldmann/volcano3D/issues
License: GPL-2
URL: https://katrionagoldmann.github.io/volcano3D/index.html, https://github.com/KatrionaGoldmann/volcano3D
NeedsCompilation: no
Language: en-gb
Materials: NEWS
In views: Omics
CRAN checks: volcano3D results

Documentation:

Reference manual: volcano3D.pdf
Vignettes: volcano3D
2x3-way analysis

Downloads:

Package source: volcano3D_2.0.9.tar.gz
Windows binaries: r-devel: volcano3D_2.0.9.zip, r-release: volcano3D_2.0.9.zip, r-oldrel: volcano3D_2.0.9.zip
macOS binaries: r-release (arm64): volcano3D_2.0.9.tgz, r-oldrel (arm64): volcano3D_2.0.9.tgz, r-release (x86_64): volcano3D_2.0.9.tgz, r-oldrel (x86_64): volcano3D_2.0.9.tgz
Old sources: volcano3D archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=volcano3D to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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