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The biomarker data set by Vermeulen et al. (2009) <doi:10.1016/S1470-2045(09)70154-8> is provided. The data source, however, is by Ruijter et al. (2013) <doi:10.1016/j.ymeth.2012.08.011>. The original data set may be downloaded from <https://medischebiologie.nl/wp-content/uploads/2019/02/qpcrdatamethods.zip>. This data set is for a real-time quantitative polymerase chain reaction (PCR) experiment that comprises the raw fluorescence data of 24,576 amplification curves. This data set comprises 59 genes of interest and 5 reference genes. Each gene was assessed on 366 neuroblastoma complementary DNA (cDNA) samples and on 18 standard dilution series samples (10-fold 5-point dilution series x 3 replicates + no template controls (NTC) x 3 replicates).
Version: | 0.1.2 |
Depends: | R (≥ 2.10) |
Imports: | memoise |
Suggests: | dplyr, ggplot2, rmarkdown, spelling, testthat (≥ 3.0.0), tibble |
Published: | 2024-04-22 |
DOI: | 10.32614/CRAN.package.vermeulen |
Author: | Ramiro Magno |
Maintainer: | Ramiro Magno <rmagno at pattern.institute> |
BugReports: | https://github.com/ramiromagno/vermeulen/issues |
License: | CC BY 4.0 |
URL: | https://github.com/ramiromagno/vermeulen, https://rmagno.eu/vermeulen/ |
NeedsCompilation: | no |
Language: | en-US |
Materials: | README NEWS |
CRAN checks: | vermeulen results |
Reference manual: | vermeulen.pdf |
Package source: | vermeulen_0.1.2.tar.gz |
Windows binaries: | r-devel: vermeulen_0.1.2.zip, r-release: vermeulen_0.1.2.zip, r-oldrel: vermeulen_0.1.2.zip |
macOS binaries: | r-release (arm64): vermeulen_0.1.2.tgz, r-oldrel (arm64): vermeulen_0.1.2.tgz, r-release (x86_64): vermeulen_0.1.2.tgz, r-oldrel (x86_64): vermeulen_0.1.2.tgz |
Old sources: | vermeulen archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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